The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011126	Candidatus Coxiella mudrowiae strain CRt chromosome, complete genome	1733840	231535	241024	1733840	tRNA	Acanthamoeba_polyphaga_lentillevirus(14.29%)	9	NA	NA
WP_048874879.1|231535_233173_-|tRNA	methionine--tRNA ligase	tRNA	J3E7X8	Acanthamoeba_polyphaga_lentillevirus	29.0	1.3e-58
WP_048874880.1|233309_234197_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA	NA
WP_048874881.1|234196_234763_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	74.3	3.4e-72
WP_048874882.1|235010_236678_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.0	2.1e-154
WP_048874883.1|236825_237683_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	43.5	5.8e-55
WP_048874884.1|237777_239052_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	58.5	1.6e-133
WP_048874885.1|239070_239343_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_082160394.1|239517_240294_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	61.2	8.2e-85
WP_048875754.1|240352_241024_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	45.2	1.6e-15
>prophage 2
NZ_CP011126	Candidatus Coxiella mudrowiae strain CRt chromosome, complete genome	1733840	1090973	1100694	1733840	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_048875329.1|1090973_1093592_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	40.3	2.1e-84
WP_048875330.1|1093588_1094038_-	regulatory protein RecX	NA	NA	NA	NA	NA
WP_048875331.1|1094034_1095069_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.9	2.5e-113
WP_048875332.1|1095183_1095672_-	CinA family protein	NA	B5TK85	Pseudomonas_phage	43.4	5.4e-26
WP_048875333.1|1095765_1098342_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	23.3	3.7e-41
WP_048875334.1|1099242_1099752_+	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.1	2.3e-19
WP_048875335.1|1099714_1100071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162198821.1|1100090_1100195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082160441.1|1100184_1100694_+	hypothetical protein	NA	A0A0P0IY73	Acinetobacter_phage	33.5	6.7e-11
>prophage 3
NZ_CP011126	Candidatus Coxiella mudrowiae strain CRt chromosome, complete genome	1733840	1419698	1427248	1733840		uncultured_Mediterranean_phage(42.86%)	12	NA	NA
WP_048875534.1|1419698_1420466_-	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	35.1	1.7e-34
WP_048875535.1|1420564_1421191_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_157870892.1|1421187_1422606_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	30.1	1.3e-51
WP_048875536.1|1422583_1423042_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	56.7	5.3e-47
WP_082160465.1|1423396_1423669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082160466.1|1423656_1423920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048875537.1|1424066_1424303_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_048875538.1|1424323_1424536_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_048875539.1|1424587_1424836_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	48.4	1.9e-14
WP_048875540.1|1424847_1425333_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	43.7	3.7e-27
WP_048875541.1|1425425_1425929_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4W084	Pandoravirus	35.0	3.5e-12
WP_048875542.1|1425931_1427248_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	33.5	1.1e-23
