assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001051115.1_ASM105111v1	NZ_CP007504	Riemerella anatipestifer strain RA153 chromosome, complete genome	1	858289-859566	1,1	CRISPRCasFinder,PILER-CR	no	cas2,cas1	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28	Unclear	GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC,GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC	47,47	0	0	NA	NA	NA:NA	16,13	16	Unclear	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28	NA|146aa|up_4|NZ_CP007504.1_850140_850578_-,NA|468aa|up_1|NZ_CP007504.1_856606_858010_+,NA|60aa|up_0|NZ_CP007504.1_858107_858287_+,NA	NA|361aa|up_9|NZ_CP007504.1_843450_844533_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_8|NZ_CP007504.1_844618_845389_-	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	NA|671aa|up_7|NZ_CP007504.1_845412_847425_-	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|223aa|up_6|NZ_CP007504.1_847489_848158_-	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum	NA|603aa|up_5|NZ_CP007504.1_848282_850091_-	pfam03772, Competence, Competence protein	NA|146aa|up_4|NZ_CP007504.1_850140_850578_-	NA	NA|543aa|up_3|NZ_CP007504.1_850577_852206_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|398aa|up_2|NZ_CP007504.1_852310_853504_-	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like	NA|468aa|up_1|NZ_CP007504.1_856606_858010_+	NA	NA|60aa|up_0|NZ_CP007504.1_858107_858287_+	NA	cas2|113aa|down_0|NZ_CP007504.1_859673_860012_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|300aa|down_1|NZ_CP007504.1_860001_860901_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|312aa|down_2|NZ_CP007504.1_865365_866301_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|110aa|down_3|NZ_CP007504.1_866346_866676_-	PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional	NA|351aa|down_4|NZ_CP007504.1_866681_867734_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|249aa|down_5|NZ_CP007504.1_867892_868639_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|167aa|down_6|NZ_CP007504.1_868668_869169_+	pfam10652, DUF2480, Protein of unknown function (DUF2480)	NA|222aa|down_7|NZ_CP007504.1_869216_869882_+	pfam06078, DUF937, Bacterial protein of unknown function (DUF937)	NA|325aa|down_8|NZ_CP007504.1_870033_871008_+	pfam01916, DS, Deoxyhypusine synthase	NA|176aa|down_9|NZ_CP007504.1_871112_871640_+	TIGR04128, hypothetical_protein_HMPREF0204_10576, exosortase family protein XrtF
GCF_001051115.1_ASM105111v1	NZ_CP007504	Riemerella anatipestifer strain RA153 chromosome, complete genome	2	1731774-1733071	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no	WYL,Csx28	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28	Type VI-B2	GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC,GTTGTGAATACCCTTCAAANTGAGAGCAGTCCCAAC,GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC	36,36,36	0	0	NA	NA	VI-B2:VI-B2:VI-B2	16,12,8	16	TypeVI-B2	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28	NA|71aa|up_6|NZ_CP007504.1_1719406_1719619_+,NA|229aa|up_2|NZ_CP007504.1_1728201_1728888_+,Csx28|179aa|down_0|NZ_CP007504.1_1733199_1733736_-	NA|201aa|up_9|NZ_CP007504.1_1710721_1711324_-	pfam03167, UDG, Uracil DNA glycosylase superfamily	NA|175aa|up_8|NZ_CP007504.1_1712174_1712699_+	cd00138, PLDc_SF, Catalytic domain of phospholipase D superfamily proteins	WYL|304aa|up_7|NZ_CP007504.1_1712751_1713663_+	pfam13280, WYL, WYL domain	NA|71aa|up_6|NZ_CP007504.1_1719406_1719619_+	NA	NA|490aa|up_5|NZ_CP007504.1_1721971_1723441_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|427aa|up_4|NZ_CP007504.1_1725055_1726336_-	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|388aa|up_3|NZ_CP007504.1_1726362_1727526_-	COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|229aa|up_2|NZ_CP007504.1_1728201_1728888_+	NA	NA|443aa|up_1|NZ_CP007504.1_1728915_1730244_+	cd00037, CLECT, C-type lectin (CTL)/C-type lectin-like (CTLD) domain	NA|240aa|up_0|NZ_CP007504.1_1730265_1730985_+	pfam14848, HU-DNA_bdg, DNA-binding domain	Csx28|179aa|down_0|NZ_CP007504.1_1733199_1733736_-	NA	NA|350aa|down_1|NZ_CP007504.1_1738150_1739200_-	pfam02685, Glucokinase, Glucokinase	NA|868aa|down_2|NZ_CP007504.1_1739364_1741968_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|307aa|down_3|NZ_CP007504.1_1743523_1744444_-	cd01946, ribokinase_group_C, Ribokinase-like subgroup C	NA|188aa|down_4|NZ_CP007504.1_1744469_1745033_-	TIGR03512, GldD_lipo, gliding motility-associated lipoprotein GldD	NA|346aa|down_5|NZ_CP007504.1_1745076_1746114_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|98aa|down_6|NZ_CP007504.1_1746159_1746453_+	cd13836, IHF_B, Beta subunit of integration host factor (IHFB)	NA|520aa|down_7|NZ_CP007504.1_1746676_1748236_+	pfam10150, RNase_E_G, Ribonuclease E/G family	NA|864aa|down_8|NZ_CP007504.1_1748362_1750954_+	pfam16313, DUF4953, Met-zincin	NA|439aa|down_9|NZ_CP007504.1_1754069_1755386_+	pfam14322, SusD-like_3, Starch-binding associating with outer membrane
GCF_001051115.1_ASM105111v1	NZ_CP007504	Riemerella anatipestifer strain RA153 chromosome, complete genome	3	1868446-1868705	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28	Orphan	GGTTCTAGGCTAAGTCGCCTAGGTTCGTT	29	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28	NA|406aa|up_6|NZ_CP007504.1_1856812_1858030_-,NA|262aa|down_6|NZ_CP007504.1_1878374_1879160_+	NA|520aa|up_9|NZ_CP007504.1_1853076_1854636_+	TIGR03517, GldM_gliding, gliding motility-associated protein GldM	NA|305aa|up_8|NZ_CP007504.1_1854691_1855606_+	TIGR03523, hypothetical_protein_P700755_05002, gliding motility associated protien GldN	NA|349aa|up_7|NZ_CP007504.1_1855692_1856739_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|406aa|up_6|NZ_CP007504.1_1856812_1858030_-	NA	NA|851aa|up_5|NZ_CP007504.1_1858067_1860620_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|226aa|up_4|NZ_CP007504.1_1860883_1861561_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|220aa|up_3|NZ_CP007504.1_1862672_1863332_+	pfam04264, YceI, YceI-like domain	NA|1120aa|up_2|NZ_CP007504.1_1863385_1866745_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|191aa|up_1|NZ_CP007504.1_1867352_1867925_+	PRK00150, def, peptide deformylase; Reviewed	NA|141aa|up_0|NZ_CP007504.1_1867952_1868375_+	pfam18347, DUF5606, Domain of unknown function (DUF5606)	NA|258aa|down_0|NZ_CP007504.1_1868914_1869688_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|249aa|down_1|NZ_CP007504.1_1869718_1870465_+	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|340aa|down_2|NZ_CP007504.1_1872452_1873472_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|515aa|down_3|NZ_CP007504.1_1875141_1876686_-	NF033449, BREX_PglZ_3, BREX-3 system phosphatase PglZ	NA|292aa|down_4|NZ_CP007504.1_1876835_1877711_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|167aa|down_5|NZ_CP007504.1_1877859_1878360_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|262aa|down_6|NZ_CP007504.1_1878374_1879160_+	NA	NA|229aa|down_7|NZ_CP007504.1_1879154_1879841_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|163aa|down_8|NZ_CP007504.1_1879903_1880392_-	pfam03974, Ecotin, Ecotin	NA|256aa|down_9|NZ_CP007504.1_1880507_1881275_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein
