The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012045	Streptococcus pyogenes strain HKU488, complete genome	1943415	36805	49118	1943415		Synechococcus_phage(28.57%)	8	NA	NA
WP_015055883.1|36805_40531_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.3	1.5e-38
WP_010921773.1|40691_42146_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
WP_010921774.1|42173_43196_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	1.1e-63
WP_010921775.1|43363_43918_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	5.2e-25
WP_011285343.1|44101_45649_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	51.3	8.3e-44
WP_010921776.1|45706_46831_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
WP_010921777.1|47083_48349_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_049524746.1|48626_49118_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	40.9	1.0e-16
>prophage 2
NZ_CP012045	Streptococcus pyogenes strain HKU488, complete genome	1943415	361680	367714	1943415		Streptococcus_phage(100.0%)	9	NA	NA
WP_010921930.1|361680_362316_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
WP_010921931.1|362333_363209_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.8	7.7e-63
WP_010921932.1|363227_363467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002985838.1|363871_364195_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
WP_010921933.1|364199_365063_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
WP_002985833.1|365089_365482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010921934.1|365528_366158_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_011284536.1|366456_366813_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
WP_010921936.1|366886_367714_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.1	1.4e-127
>prophage 3
NZ_CP012045	Streptococcus pyogenes strain HKU488, complete genome	1943415	647391	657994	1943415		Streptococcus_phage(57.14%)	9	NA	NA
WP_010922138.1|647391_649602_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
WP_002985142.1|649709_650873_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
WP_002985140.1|650869_651556_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
WP_010922139.1|651649_652816_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.4	1.8e-38
WP_010922140.1|652876_653218_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
WP_010922141.1|653438_654791_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
WP_002990257.1|654878_656147_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_010922142.1|656176_656617_-	membrane protein	NA	NA	NA	NA	NA
WP_011285480.1|656851_657994_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	31.7	7.8e-15
>prophage 4
NZ_CP012045	Streptococcus pyogenes strain HKU488, complete genome	1943415	1000796	1048536	1943415	tail,integrase,portal,terminase,holin	Streptococcus_pyogenes_phage(71.43%)	62	993835:993851	1050296:1050312
993835:993851	attL	TTGAAAATCTTGGAAAA	NA	NA	NA	NA
WP_010922376.1|1000796_1003907_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.9	3.7e-120
WP_049524979.1|1004091_1004463_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002984437.1|1004462_1005161_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
WP_010922378.1|1005170_1005956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011285558.1|1006082_1006697_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	1.1e-50
WP_011285559.1|1007288_1007477_-	hypothetical protein	NA	J7KIW4	Streptococcus_phage	82.3	3.4e-21
WP_011285560.1|1007696_1008452_+	streptococcal pyrogenic exotoxin SpeA	NA	A0A097PAT7	Streptococcus_pyogenes_phage	99.6	1.9e-142
WP_009880240.1|1008573_1009233_-	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
WP_009880241.1|1009232_1009454_-	hypothetical protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
WP_011054795.1|1009463_1010237_-	hypothetical protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
WP_011054796.1|1010247_1010850_-	hypothetical protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
WP_011285561.1|1010861_1011626_-	CHAP domain-containing protein	NA	A0A097PAT3	Streptococcus_pyogenes_phage	98.4	8.0e-149
WP_011285562.1|1011627_1011960_-|holin	phage holin	holin	A0A097PBF6	Streptococcus_pyogenes_phage	99.1	7.4e-51
WP_015055952.1|1011959_1012283_-	hypothetical protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
WP_011285564.1|1012432_1012780_-	DUF1366 domain-containing protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	99.1	6.5e-58
WP_015055954.1|1012790_1014653_-	hypothetical protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.4	0.0e+00
WP_011285566.1|1014657_1018098_-	CHAP domain-containing protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	98.7	0.0e+00
WP_009880250.1|1018098_1019583_-	hypothetical protein	NA	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
WP_011054802.1|1019583_1021389_-|tail	tail protein	tail	A0A097PAU2	Streptococcus_pyogenes_phage	99.7	8.8e-263
WP_009880253.1|1021381_1021840_-	hypothetical protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	100.0	2.3e-82
WP_009880254.1|1021812_1022130_-	hypothetical protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
WP_009880255.1|1022142_1022649_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
WP_009880256.1|1022660_1023071_-	DUF5072 domain-containing protein	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
WP_009880257.1|1023072_1023468_-	hypothetical protein	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.8e-59
WP_011285567.1|1023464_1023776_-	hypothetical protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	98.1	1.0e-49
WP_009880259.1|1023772_1024117_-	hypothetical protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
WP_009880260.1|1024130_1024424_-	hypothetical protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
WP_049524985.1|1024436_1025327_-	hypothetical protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	98.8	1.1e-85
WP_009880262.1|1025345_1025915_-	DUF4355 domain-containing protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	98.4	8.5e-71
WP_011285568.1|1026159_1026429_-	hypothetical protein	NA	Q938K9	Temperate_phage	85.2	5.6e-33
WP_011285569.1|1026435_1027344_-	hypothetical protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	98.2	6.7e-86
WP_011285570.1|1027312_1028638_-|portal	phage portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	97.2	1.6e-237
WP_009880266.1|1028637_1029912_-|terminase	PBSX family phage terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
WP_011285571.1|1029901_1030282_-	hypothetical protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
WP_011054810.1|1030891_1031326_-	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	94.4	2.2e-71
WP_011018131.1|1031611_1031878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011285572.1|1031874_1032399_-	DUF1642 domain-containing protein	NA	J7KK91	Streptococcus_phage	51.1	2.3e-38
WP_011018133.1|1032401_1033034_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
WP_011018134.1|1033035_1033320_-	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	87.2	8.9e-37
WP_002995955.1|1033483_1033720_-	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
WP_011284873.1|1033961_1034318_-	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
WP_011285574.1|1034314_1034755_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
WP_011106686.1|1034754_1034958_-	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
WP_011285575.1|1034963_1035389_-	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	82.3	2.8e-55
WP_011285576.1|1035381_1036056_-	ERF family protein	NA	Q938M8	Temperate_phage	96.0	1.3e-102
WP_011285577.1|1036056_1036539_-	siphovirus Gp157 family protein	NA	Q938M9	Temperate_phage	99.4	4.1e-50
WP_011285578.1|1036560_1036815_-	hypothetical protein	NA	Q938N0	Temperate_phage	97.6	1.8e-41
WP_011285579.1|1036795_1037149_-	hypothetical protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	54.0	2.8e-16
WP_011285581.1|1037289_1038072_-	DNA replication protein	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	96.9	3.9e-143
WP_009881060.1|1038058_1038889_-	DnaD domain protein	NA	A0A1S5S918	Streptococcus_phage	54.7	6.4e-67
WP_031499363.1|1039060_1039564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011017885.1|1039694_1039904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002992770.1|1040013_1040214_-	helix-turn-helix transcriptional regulator	NA	A0A141E205	Streptococcus_phage	59.6	2.7e-08
WP_011054589.1|1040287_1040674_+	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
WP_011284881.1|1040662_1040872_-	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
WP_011284882.1|1040925_1041525_+	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
WP_011285583.1|1041554_1041713_-	hypothetical protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
WP_011285584.1|1042069_1042894_+	helix-turn-helix transcriptional regulator	NA	A0A097PBE5	Streptococcus_pyogenes_phage	91.6	1.2e-131
WP_011285585.1|1042929_1043823_+	hypothetical protein	NA	A0A1I9LJQ0	Stx_converting_phage	47.5	1.2e-68
WP_011054595.1|1043943_1045032_+|integrase	site-specific integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.2	4.7e-203
WP_002989605.1|1045394_1046015_+	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
WP_010922381.1|1046271_1048536_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
1050296:1050312	attR	TTTTCCAAGATTTTCAA	NA	NA	NA	NA
>prophage 5
NZ_CP012045	Streptococcus pyogenes strain HKU488, complete genome	1943415	1098291	1123194	1943415	transposase,integrase	Streptococcus_phage(82.61%)	28	1093890:1093905	1104093:1104108
1093890:1093905	attL	GGTCTTGTATATGATA	NA	NA	NA	NA
WP_006269672.1|1098291_1100025_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.5	1.6e-35
WP_002989485.1|1100018_1101764_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	2.7e-35
WP_049525006.1|1102820_1104038_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	4.9e-233
WP_000814511.1|1104119_1104323_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
1104093:1104108	attR	TATCATATACAAGACC	NA	NA	NA	NA
WP_001845478.1|1104306_1104558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000857133.1|1104783_1105014_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|1105010_1105433_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_013670292.1|1105661_1105733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001227347.1|1105937_1106291_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_011058338.1|1106350_1106536_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
WP_019418832.1|1106636_1108556_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A2K5B2A5	Erysipelothrix_phage	99.8	0.0e+00
WP_012386611.1|1108571_1108658_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224320.1|1108932_1109868_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_000769868.1|1109864_1110866_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|1110862_1113040_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_019418831.1|1113042_1115490_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.5	0.0e+00
WP_000506270.1|1115473_1115980_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|1115954_1116452_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1116568_1116790_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000019067.1|1116969_1118217_+|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	3.9e-12
WP_000085862.1|1118337_1118469_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
WP_001038795.1|1118473_1119211_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	3.1e-134
WP_001814874.1|1119335_1119419_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001815707.1|1119467_1120886_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	1.5e-233
WP_000879507.1|1120908_1121061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|1121063_1122449_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|1122477_1122864_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|1122879_1123194_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
>prophage 6
NZ_CP012045	Streptococcus pyogenes strain HKU488, complete genome	1943415	1227637	1265854	1943415	tail,integrase,portal,terminase,holin	Streptococcus_phage(71.74%)	58	1229842:1229861	1263239:1263258
WP_049525050.1|1227637_1229500_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.5	2.3e-88
1229842:1229861	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
WP_011017964.1|1230030_1230213_-	hypothetical protein	NA	A3F673	Streptococcus_phage	76.7	1.4e-19
WP_002984424.1|1230445_1231252_+	streptodornase Sda3	NA	NA	NA	NA	NA
WP_010922445.1|1231471_1231957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922446.1|1232026_1233232_-	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	84.3	5.9e-207
WP_003058873.1|1233347_1233575_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
WP_002987582.1|1233571_1233847_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
WP_011285613.1|1233856_1234474_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	83.9	4.4e-73
WP_011285614.1|1234470_1234908_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	97.9	3.8e-71
WP_011285615.1|1234919_1236788_-	hypothetical protein	NA	Q938J9	Temperate_phage	56.2	1.2e-89
WP_010922452.1|1236784_1237480_-	hypothetical protein	NA	A0A1B1P761	Bacillus_phage	29.6	7.6e-05
WP_010922453.1|1237476_1239834_-	hypothetical protein	NA	M1NRG5	Streptococcus_phage	50.6	6.5e-141
WP_010922454.1|1239833_1240205_-	DUF5361 domain-containing protein	NA	M1PL84	Streptococcus_phage	62.4	2.9e-35
WP_010922455.1|1240219_1240483_-	hypothetical protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
WP_010922456.1|1240493_1241087_-|tail	tail protein	tail	M1PKG8	Streptococcus_phage	62.5	3.5e-59
WP_011285616.1|1241098_1241434_-	hypothetical protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
WP_010922457.1|1241434_1241671_-	hypothetical protein	NA	A0A0B5A7G2	Streptococcus_phage	71.4	2.5e-21
WP_011285617.1|1241663_1242002_-	hypothetical protein	NA	M1PFF8	Streptococcus_phage	70.3	2.2e-42
WP_010922459.1|1241961_1242384_-	hypothetical protein	NA	A0A0B5A2F6	Streptococcus_phage	70.8	3.7e-47
WP_010922460.1|1242393_1242594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010922461.1|1242593_1243505_-	hypothetical protein	NA	M1PFL0	Streptococcus_phage	67.3	9.9e-114
WP_011285618.1|1243529_1243991_-	DUF4355 domain-containing protein	NA	M1Q1L0	Streptococcus_phage	53.2	3.4e-38
WP_011285619.1|1244071_1245487_-|terminase	terminase	terminase	A0A0B5A091	Streptococcus_phage	74.2	2.9e-213
WP_010922464.1|1245596_1245863_-	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	86.4	7.3e-33
WP_010922465.1|1245855_1246116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010922466.1|1246084_1246309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015446231.1|1246314_1247808_-	hypothetical protein	NA	M1Q184	Streptococcus_phage	54.6	2.2e-86
WP_010922468.1|1247800_1249069_-|portal	phage portal protein	portal	M1PFL4	Streptococcus_phage	75.6	2.2e-188
WP_010922469.1|1249569_1249914_-	HNH endonuclease	NA	M1Q0W7	Streptococcus_phage	68.5	5.5e-41
WP_010922470.1|1250022_1250442_-	DUF1492 domain-containing protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	8.7e-57
WP_010922070.1|1250709_1251345_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
WP_049525058.1|1251346_1251616_-	hypothetical protein	NA	A7J287	Streptococcus_phage	76.4	4.6e-27
WP_002988366.1|1251699_1252212_-	hypothetical protein	NA	Q708P9	Streptococcus_phage	78.0	2.3e-67
WP_011285623.1|1252208_1252622_-	hypothetical protein	NA	M1NS23	Streptococcus_phage	38.7	5.8e-13
WP_011285625.1|1252904_1253702_-	hypothetical protein	NA	J7KGZ1	Streptococcus_phage	84.5	6.0e-131
WP_011285626.1|1253698_1254628_-	DNA recombination protein RecT	NA	M1NRN6	Streptococcus_phage	72.2	1.1e-91
WP_002988359.1|1254630_1254960_-	hypothetical protein	NA	J7KGX3	Streptococcus_phage	83.5	2.1e-45
WP_011017565.1|1255015_1255222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017992.1|1255230_1255371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002985387.1|1255367_1255601_-	hypothetical protein	NA	Q938N1	Temperate_phage	94.8	6.1e-36
WP_011285627.1|1255581_1255971_-	DnaD domain protein	NA	Q938N2	Temperate_phage	81.4	9.3e-45
WP_011285628.1|1256454_1256640_-	hypothetical protein	NA	Q938N3	Temperate_phage	88.5	5.8e-21
WP_002990080.1|1256641_1256953_-	hypothetical protein	NA	A0A1S5SA25	Streptococcus_phage	78.4	4.1e-43
WP_011054585.1|1257030_1257216_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
WP_011284879.1|1257382_1257622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049525064.1|1257763_1258570_+	TIGR02391 family protein	NA	A0A1S5SBU1	Streptococcus_phage	81.7	6.7e-122
WP_010922204.1|1258504_1258771_-	hypothetical protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
WP_011285630.1|1258802_1259519_-	oxidoreductase	NA	C9WB91	Streptococcus_virus	87.7	6.8e-118
WP_002993390.1|1259530_1259722_-	hypothetical protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
WP_020837421.1|1260357_1260453_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_011285631.1|1260875_1261223_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SEQ8	Streptococcus_phage	71.8	3.6e-40
WP_002994744.1|1261226_1261607_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.1	8.0e-41
WP_011285632.1|1261618_1261885_+	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
WP_003051793.1|1262008_1263151_+|integrase	site-specific integrase	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
WP_002983920.1|1263240_1263516_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1263239:1263258	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
WP_010922482.1|1263614_1264202_-	YpmS family protein	NA	NA	NA	NA	NA
WP_010922483.1|1264179_1265040_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002989125.1|1265014_1265854_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 7
NZ_CP012045	Streptococcus pyogenes strain HKU488, complete genome	1943415	1469706	1513773	1943415	tail,integrase,portal,head,terminase,tRNA	Streptococcus_phage(80.85%)	55	1469569:1469585	1510369:1510385
1469569:1469585	attL	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
WP_002988813.1|1469706_1469886_-	hypothetical protein	NA	A3F673	Streptococcus_phage	83.1	5.6e-21
WP_002988811.1|1470124_1471297_+	streptodornase Sda1	NA	A7J2B8	Streptococcus_phage	49.8	4.7e-76
WP_002988807.1|1471412_1472609_-	streptodornase Sda1	NA	Q938J4	Temperate_phage	82.2	6.1e-196
WP_002988802.1|1472719_1472905_-	hypothetical protein	NA	Q938J5	Temperate_phage	93.4	9.5e-24
WP_002988799.1|1472901_1473201_-	hypothetical protein	NA	Q938J6	Temperate_phage	82.3	3.5e-36
WP_002988797.1|1473211_1473832_-	hypothetical protein	NA	A3F662	Streptococcus_phage	88.8	8.3e-80
WP_002988795.1|1473834_1473996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988792.1|1474004_1475912_-	hypothetical protein	NA	Q938J9	Temperate_phage	60.9	1.3e-134
WP_002988442.1|1475922_1476558_-	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	67.6	2.2e-75
WP_002988439.1|1476557_1477613_-	hypothetical protein	NA	A3F657	Streptococcus_phage	73.2	1.2e-126
WP_002988790.1|1477609_1479592_-	peptidase	NA	A7J2A7	Streptococcus_phage	92.5	0.0e+00
WP_002988788.1|1479601_1480444_-	hypothetical protein	NA	A7J2A6	Streptococcus_phage	99.6	8.5e-160
WP_002988786.1|1480455_1484838_-	tape measure protein	NA	A7J2A5	Streptococcus_phage	76.4	3.2e-226
WP_002983445.1|1484852_1485086_-	hypothetical protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
WP_002983443.1|1485160_1485616_-	hypothetical protein	NA	A7J2A3	Streptococcus_phage	100.0	8.3e-77
WP_002988784.1|1485669_1486269_-|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	98.9	4.1e-92
WP_002988782.1|1486280_1486640_-	hypothetical protein	NA	A7J2A1	Streptococcus_phage	97.5	6.8e-58
WP_002988781.1|1486643_1486988_-	hypothetical protein	NA	A7J2A0	Streptococcus_phage	99.1	6.1e-56
WP_000639437.1|1486984_1487263_-	hypothetical protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
WP_002988776.1|1487273_1487630_-|head,tail	phage head-tail connector protein	head,tail	A7J298	Streptococcus_phage	97.5	2.8e-56
WP_002988771.1|1487641_1488529_-	hypothetical protein	NA	A7J297	Streptococcus_phage	99.7	3.6e-161
WP_002988768.1|1488541_1489111_-	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	97.9	2.6e-80
WP_002988765.1|1489266_1489533_-	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	88.6	1.7e-34
WP_002983423.1|1489535_1489724_-	hypothetical protein	NA	A7J294	Streptococcus_phage	98.4	1.4e-22
WP_015446273.1|1489754_1491200_-	hypothetical protein	NA	A7J293	Streptococcus_phage	92.9	3.4e-257
WP_002988758.1|1491159_1492692_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.2	1.3e-286
WP_002988754.1|1492707_1493985_-|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	97.6	1.3e-241
WP_011106637.1|1493974_1494427_-|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
WP_002988747.1|1494516_1494933_-	DUF722 domain-containing protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
WP_002988743.1|1494929_1495121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988740.1|1495110_1495962_-	site-specific DNA-methyltransferase	NA	A0A1W6JMZ7	Lactococcus_phage	71.9	1.5e-100
WP_002988738.1|1495970_1496237_-	hypothetical protein	NA	A7J287	Streptococcus_phage	65.2	5.4e-20
WP_002988733.1|1496401_1497724_-	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	98.4	1.9e-254
WP_002988730.1|1497720_1497996_-	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	100.0	9.1e-47
WP_011285674.1|1498382_1500767_-	DNA primase	NA	A7J282	Streptococcus_phage	94.4	4.1e-276
WP_002988723.1|1500771_1502694_-	DNA polymerase	NA	A7J280	Streptococcus_phage	96.7	0.0e+00
WP_002988718.1|1502736_1503294_-	DUF2815 family protein	NA	D2J040	Enterococcus_phage	57.9	2.5e-51
WP_002988715.1|1503304_1503703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988711.1|1503706_1504861_-	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	91.9	4.5e-204
WP_002988708.1|1504860_1505160_-	hypothetical protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
WP_002988705.1|1505247_1505451_-	hypothetical protein	NA	A7J276	Streptococcus_phage	95.5	2.3e-31
WP_002988700.1|1505596_1505983_-	hypothetical protein	NA	A7J274	Streptococcus_phage	88.2	3.1e-56
WP_002988697.1|1505979_1506183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988693.1|1506175_1506346_-	hypothetical protein	NA	A7J273	Streptococcus_phage	89.3	6.9e-21
WP_002988687.1|1506342_1506618_-	hypothetical protein	NA	A7J272	Streptococcus_phage	95.6	5.9e-46
WP_002988684.1|1506679_1506895_-	hypothetical protein	NA	M1Q1B4	Streptococcus_phage	76.8	4.2e-23
WP_002988681.1|1506942_1507356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011285676.1|1507766_1508168_+	helix-turn-helix transcriptional regulator	NA	A7J269	Streptococcus_phage	72.9	1.1e-40
WP_002988673.1|1508181_1508565_+	hypothetical protein	NA	A7J268	Streptococcus_phage	99.2	5.3e-69
WP_002988670.1|1508575_1509127_+	hypothetical protein	NA	A7J267	Streptococcus_phage	92.3	3.4e-85
WP_002988667.1|1509243_1510323_+|integrase	site-specific integrase	integrase	A7J266	Streptococcus_phage	86.9	1.3e-176
WP_002983387.1|1510520_1511156_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
1510369:1510385	attR	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
WP_002983385.1|1511155_1511947_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_010922583.1|1512010_1513045_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002983379.1|1513047_1513773_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
>prophage 8
NZ_CP012045	Streptococcus pyogenes strain HKU488, complete genome	1943415	1579322	1643168	1943415	tail,transposase,integrase,portal,head,terminase,holin	Streptococcus_phage(40.35%)	78	1596791:1596808	1643248:1643265
WP_000564846.1|1579322_1580456_-|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
WP_002983189.1|1580617_1581571_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA	NA
WP_010922622.1|1581665_1582550_-	ROK family protein	NA	NA	NA	NA	NA
WP_011285695.1|1582813_1585801_-	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
WP_011285697.1|1586031_1587915_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_010922625.1|1588156_1589596_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_002988504.1|1589600_1590566_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.7	8.0e-21
WP_011285698.1|1590706_1591159_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_002983163.1|1591151_1591541_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002988496.1|1591586_1592144_-	elongation factor P	NA	NA	NA	NA	NA
WP_002988493.1|1592239_1592701_-	hypothetical protein	NA	F8WPT6	Bacillus_phage	55.1	1.1e-33
WP_010922627.1|1592735_1593809_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	32.2	2.3e-16
WP_015055996.1|1593923_1596752_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.6	1.1e-304
1596791:1596808	attL	CTTATATTATAACAAAAA	NA	NA	NA	NA
WP_002988483.1|1596978_1597161_-	hypothetical protein	NA	A3F673	Streptococcus_phage	71.7	6.5e-17
WP_002985324.1|1597400_1598159_+	DNase Mf2	NA	NA	NA	NA	NA
WP_002988478.1|1598269_1598977_+	streptococcal pyrogenic exotoxin SpeC	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.5	1.4e-09
WP_002988476.1|1599044_1599179_-	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	65.5	7.1e-05
WP_002988472.1|1599291_1600074_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
WP_002988467.1|1600321_1601446_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
WP_002988464.1|1602124_1603333_-	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	86.1	3.6e-212
WP_002988455.1|1603444_1603900_-|holin	phage holin family protein	holin	A0A0M4R3G6	Streptococcus_phage	81.5	5.2e-63
WP_002988450.1|1603909_1604542_-	hypothetical protein	NA	Q938J7	Temperate_phage	48.6	1.7e-43
WP_002988448.1|1604544_1604973_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
WP_002988445.1|1604984_1606892_-	hypothetical protein	NA	Q938J9	Temperate_phage	81.0	1.8e-194
WP_002988442.1|1606902_1607538_-	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	67.6	2.2e-75
WP_002988439.1|1607537_1608593_-	hypothetical protein	NA	A3F657	Streptococcus_phage	73.2	1.2e-126
WP_038433827.1|1608589_1610644_-	hypothetical protein	NA	A3F656	Streptococcus_phage	84.2	0.0e+00
WP_002988434.1|1610640_1611420_-	hypothetical protein	NA	A3F655	Streptococcus_phage	55.6	9.2e-68
WP_049525131.1|1611452_1615088_-	tape measure protein	NA	U6E979	Streptococcus_phage	28.0	4.0e-04
WP_002988428.1|1615102_1615432_-	hypothetical protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
WP_002988426.1|1615473_1615833_-	hypothetical protein	NA	D7RWD6	Brochothrix_phage	43.6	9.5e-20
WP_038433828.1|1615886_1616498_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	51.7	2.2e-40
WP_002988420.1|1616552_1616942_-	hypothetical protein	NA	B5SP36	Lactococcus_phage	66.7	2.3e-43
WP_002988417.1|1616938_1617304_-	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	45.5	6.5e-16
WP_002988415.1|1617284_1617593_-	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	41.2	3.3e-13
WP_002988412.1|1617589_1617943_-	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
WP_002988409.1|1617956_1618199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988406.1|1618208_1619291_-	hypothetical protein	NA	A0A2H4J022	uncultured_Caudovirales_phage	57.1	4.5e-105
WP_002988404.1|1619293_1619674_-|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	2.4e-05
WP_002988401.1|1619683_1620217_-	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	82.5	1.8e-14
WP_002988396.1|1620360_1620627_-	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	72.7	1.7e-26
WP_002988389.1|1621012_1621198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988386.1|1621201_1622764_-|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	1.6e-47
WP_002988384.1|1622744_1624247_-|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.6e-140
WP_002988380.1|1624258_1625548_-|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	1.5e-184
WP_002990047.1|1625525_1626008_-|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
WP_002987622.1|1626838_1627276_-	DUF1492 domain-containing protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	99.3	1.0e-76
WP_002988374.1|1627717_1628431_-	DUF1642 domain-containing protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	65.4	3.1e-46
WP_002988371.1|1628433_1629066_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	69.1	1.8e-85
WP_002988369.1|1629067_1629337_-	hypothetical protein	NA	A7J287	Streptococcus_phage	71.9	9.6e-25
WP_002988366.1|1629420_1629933_-	hypothetical protein	NA	Q708P9	Streptococcus_phage	78.0	2.3e-67
WP_011285623.1|1629929_1630343_-	hypothetical protein	NA	M1NS23	Streptococcus_phage	38.7	5.8e-13
WP_002988362.1|1630448_1631246_-	hypothetical protein	NA	J7KGZ1	Streptococcus_phage	83.8	6.6e-130
WP_000594115.1|1631238_1631439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988361.1|1631435_1632362_-	DNA recombination protein RecT	NA	M1NRN6	Streptococcus_phage	67.7	1.0e-89
WP_002988359.1|1632364_1632694_-	hypothetical protein	NA	J7KGX3	Streptococcus_phage	83.5	2.1e-45
WP_002988357.1|1632749_1632956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988354.1|1632964_1633105_-	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
WP_002988350.1|1633101_1633335_-	hypothetical protein	NA	Q938N1	Temperate_phage	94.8	1.8e-35
WP_019418741.1|1633315_1633705_-	DnaD domain protein	NA	Q938N2	Temperate_phage	84.5	2.0e-55
WP_019418742.1|1633865_1634123_-	hypothetical protein	NA	A0A141E1D1	Streptococcus_phage	40.5	8.9e-12
WP_002986881.1|1634216_1634402_-	hypothetical protein	NA	Q938N3	Temperate_phage	95.1	1.2e-23
WP_002988339.1|1634430_1634688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988329.1|1635175_1635376_+	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	75.4	3.3e-22
WP_002988323.1|1635553_1636282_-	oxidoreductase	NA	Q938N5	Temperate_phage	81.8	9.7e-112
WP_002988320.1|1636314_1636503_-	helix-turn-helix transcriptional regulator	NA	A0A0B5A7F0	Streptococcus_phage	65.6	1.8e-14
WP_019418744.1|1636563_1636977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019418745.1|1636978_1637137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988317.1|1637149_1637911_-	phage repressor protein/antirepressor Ant	NA	Q6SEF4	Lactobacillus_prophage	63.2	3.3e-86
WP_002988313.1|1638077_1638350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002988309.1|1638338_1638539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000164463.1|1638574_1638790_-	helix-turn-helix transcriptional regulator	NA	J7KK54	Streptococcus_phage	98.6	5.0e-32
WP_002988305.1|1638863_1639091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002988299.1|1639205_1639985_+	hypothetical protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	6.2e-48
WP_002988291.1|1640118_1640277_-	hypothetical protein	NA	J7KH24	Streptococcus_phage	92.3	1.7e-21
WP_002988288.1|1640640_1641399_+	helix-turn-helix transcriptional regulator	NA	J7KJ52	Streptococcus_phage	88.0	1.2e-120
WP_002988284.1|1641471_1641894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019418747.1|1642013_1643168_+|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	98.1	3.8e-203
1643248:1643265	attR	CTTATATTATAACAAAAA	NA	NA	NA	NA
