assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001051055.1_ASM105105v1	NZ_CP012046	Achromobacter xylosoxidans strain MN001 chromosome, complete genome	1	552243-552331	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,PD-DExK	Orphan	ACGCCGGGGCGCGTGGCGGGGCGGTCGAA	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,PD-DExK	NA,NA|120aa|down_7|NZ_CP012046.1_560953_561313_-	NA|346aa|up_9|NZ_CP012046.1_538320_539358_+	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	NA|222aa|up_8|NZ_CP012046.1_539391_540057_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|220aa|up_7|NZ_CP012046.1_540053_540713_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_6|NZ_CP012046.1_540838_541570_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|404aa|up_5|NZ_CP012046.1_541597_542809_+	PRK15072, PRK15072, D-galactonate dehydratase family protein	NA|521aa|up_4|NZ_CP012046.1_542796_544359_+	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|482aa|up_3|NZ_CP012046.1_544372_545818_-	PRK07488, PRK07488, indoleacetamide hydrolase	NA|273aa|up_2|NZ_CP012046.1_546023_546842_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|359aa|up_1|NZ_CP012046.1_547205_548282_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|1204aa|up_0|NZ_CP012046.1_548452_552064_+	PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase; Validated	NA|303aa|down_0|NZ_CP012046.1_553375_554284_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|238aa|down_1|NZ_CP012046.1_554280_554994_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|339aa|down_2|NZ_CP012046.1_555310_556327_+	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|397aa|down_3|NZ_CP012046.1_556452_557643_+	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|368aa|down_4|NZ_CP012046.1_557644_558748_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|247aa|down_5|NZ_CP012046.1_558808_559549_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|339aa|down_6|NZ_CP012046.1_559814_560831_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|120aa|down_7|NZ_CP012046.1_560953_561313_-	NA	NA|121aa|down_8|NZ_CP012046.1_561397_561760_+	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|392aa|down_9|NZ_CP012046.1_561861_563037_-	cd06359, PBP1_Nba-like, type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway
GCF_001051055.1_ASM105105v1	NZ_CP012046	Achromobacter xylosoxidans strain MN001 chromosome, complete genome	2	1587095-1587202	2	CRISPRCasFinder	no	DinG	DEDDh,cas3,DinG,csa3,WYL,PD-DExK	Type IV-A	CCAGGTCCAGGCCCAGGCCCAGGC	24	2	12	1587119-1587136|1587161-1587178|1587161-1587178|1587161-1587178|1587161-1587178|1587161-1587178|1587161-1587178|1587161-1587178|1587161-1587178|1587161-1587178|1587161-1587178|1587161-1587178	NZ_CP012046.1_4808709-4808726|NZ_CP012046.1_1587191-1587208|NZ_CP012046.1_1587197-1587214|NZ_CP012046.1_1587203-1587220|NZ_CP012046.1_1587209-1587226|NZ_CP012046.1_1587215-1587232|NZ_CP012046.1_2125919-2125936|NZ_CP012046.1_3273277-3273294|NZ_CP012046.1_3715299-3715316|NZ_CP012046.1_1010354-1010337|NZ_CP012046.1_3501466-3501449|NZ_CP012046.1_3582689-3582672	NA	2	2	Orphan	DEDDh,cas3,DinG,csa3,WYL,PD-DExK	NA|94aa|up_0|NZ_CP012046.1_1585254_1585536_+,NA|168aa|down_2|NZ_CP012046.1_1589198_1589702_-	NA|157aa|up_9|NZ_CP012046.1_1572538_1573009_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|956aa|up_8|NZ_CP012046.1_1573338_1576206_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|411aa|up_7|NZ_CP012046.1_1576309_1577542_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|476aa|up_6|NZ_CP012046.1_1577662_1579090_+	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|364aa|up_5|NZ_CP012046.1_1579166_1580258_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|178aa|up_4|NZ_CP012046.1_1580378_1580912_+	PRK12523, PRK12523, RNA polymerase sigma factor; Reviewed	NA|318aa|up_3|NZ_CP012046.1_1580904_1581858_+	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|822aa|up_2|NZ_CP012046.1_1581984_1584450_+	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|211aa|up_1|NZ_CP012046.1_1584598_1585231_+	pfam10670, DUF4198, Domain of unknown function (DUF4198)	NA|94aa|up_0|NZ_CP012046.1_1585254_1585536_+	NA	NA|108aa|down_0|NZ_CP012046.1_1587308_1587632_+	pfam11804, DUF3325, Protein of unknown function (DUF3325)	NA|451aa|down_1|NZ_CP012046.1_1587770_1589123_+	PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed	NA|168aa|down_2|NZ_CP012046.1_1589198_1589702_-	NA	NA|794aa|down_3|NZ_CP012046.1_1590013_1592395_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	DinG|694aa|down_4|NZ_CP012046.1_1592622_1594704_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|263aa|down_5|NZ_CP012046.1_1594790_1595579_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|301aa|down_6|NZ_CP012046.1_1595818_1596721_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|255aa|down_7|NZ_CP012046.1_1596708_1597473_+	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]	NA|546aa|down_8|NZ_CP012046.1_1597585_1599223_+	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I	NA|246aa|down_9|NZ_CP012046.1_1599298_1600036_+	PRK12938, PRK12938, 3-ketoacyl-ACP reductase
GCF_001051055.1_ASM105105v1	NZ_CP012046	Achromobacter xylosoxidans strain MN001 chromosome, complete genome	3	1765839-1765938	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,PD-DExK	Orphan	CCCCTCGGGGGGCAGCAAGCGCG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,PD-DExK	NA,NA	NA|608aa|up_9|NZ_CP012046.1_1752829_1754653_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|131aa|up_8|NZ_CP012046.1_1754834_1755227_-	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]	NA|287aa|up_7|NZ_CP012046.1_1755332_1756193_+	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|315aa|up_6|NZ_CP012046.1_1756212_1757157_-	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|328aa|up_5|NZ_CP012046.1_1757287_1758271_+	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|475aa|up_4|NZ_CP012046.1_1758368_1759793_+	cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein 2 aminobenzoyl-glutamate utilization protein B subfamily	NA|209aa|up_3|NZ_CP012046.1_1759862_1760489_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|906aa|up_2|NZ_CP012046.1_1760565_1763283_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|280aa|up_1|NZ_CP012046.1_1763400_1764240_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|263aa|up_0|NZ_CP012046.1_1764351_1765140_+	pfam01738, DLH, Dienelactone hydrolase family	NA|554aa|down_0|NZ_CP012046.1_1766039_1767701_-	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|464aa|down_1|NZ_CP012046.1_1767876_1769268_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|down_2|NZ_CP012046.1_1769407_1770289_-	PRK05457, PRK05457, protease HtpX	NA|285aa|down_3|NZ_CP012046.1_1770442_1771297_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|284aa|down_4|NZ_CP012046.1_1771333_1772185_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|190aa|down_5|NZ_CP012046.1_1772257_1772827_-	TIGR03276, Phn-HD, phosphonate degradation operons associated HDIG domain protein	NA|288aa|down_6|NZ_CP012046.1_1772879_1773743_-	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|377aa|down_7|NZ_CP012046.1_1773903_1775034_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|598aa|down_8|NZ_CP012046.1_1775011_1776805_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|274aa|down_9|NZ_CP012046.1_1776832_1777654_+	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional
GCF_001051055.1_ASM105105v1	NZ_CP012046	Achromobacter xylosoxidans strain MN001 chromosome, complete genome	4	3915110-3915220	4	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,PD-DExK	Orphan	TTTTTCCTTGGGGCGGCCCGGCGGCAAAAA	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,PD-DExK	NA,NA|109aa|down_7|NZ_CP012046.1_3924719_3925046_+	NA|728aa|up_9|NZ_CP012046.1_3898316_3900500_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|176aa|up_8|NZ_CP012046.1_3900499_3901027_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|476aa|up_7|NZ_CP012046.1_3901055_3902483_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|871aa|up_6|NZ_CP012046.1_3902479_3905092_-	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|402aa|up_5|NZ_CP012046.1_3905264_3906470_+	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|113aa|up_4|NZ_CP012046.1_3907073_3907412_-	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|689aa|up_3|NZ_CP012046.1_3907646_3909713_-	PRK02628, nadE, NAD synthetase; Reviewed	NA|444aa|up_2|NZ_CP012046.1_3909806_3911138_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|473aa|up_1|NZ_CP012046.1_3911412_3912831_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|680aa|up_0|NZ_CP012046.1_3913007_3915047_+	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	NA|468aa|down_0|NZ_CP012046.1_3915277_3916681_-	PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated	NA|454aa|down_1|NZ_CP012046.1_3916683_3918045_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|348aa|down_2|NZ_CP012046.1_3918046_3919090_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|411aa|down_3|NZ_CP012046.1_3919093_3920326_-	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	NA|801aa|down_4|NZ_CP012046.1_3920566_3922969_-	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|332aa|down_5|NZ_CP012046.1_3923030_3924026_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|171aa|down_6|NZ_CP012046.1_3923998_3924511_-	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|109aa|down_7|NZ_CP012046.1_3924719_3925046_+	NA	NA|198aa|down_8|NZ_CP012046.1_3925103_3925697_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|145aa|down_9|NZ_CP012046.1_3925822_3926257_-	cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators
GCF_001051055.1_ASM105105v1	NZ_CP012046	Achromobacter xylosoxidans strain MN001 chromosome, complete genome	5	5639938-5640045	5	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,PD-DExK	Orphan	GAAGGCGGCTTCCGTGGCGGCGACCGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,PD-DExK	NA|83aa|up_9|NZ_CP012046.1_5618914_5619163_-,NA|231aa|up_6|NZ_CP012046.1_5622845_5623538_-,NA|168aa|up_5|NZ_CP012046.1_5624510_5625014_-,NA|150aa|up_2|NZ_CP012046.1_5626465_5626915_-,NA	NA|83aa|up_9|NZ_CP012046.1_5618914_5619163_-	NA	NA|962aa|up_8|NZ_CP012046.1_5619172_5622058_-	pfam13332, Fil_haemagg_2, Haemagluttinin repeat	NA|165aa|up_7|NZ_CP012046.1_5622054_5622549_-	pfam13332, Fil_haemagg_2, Haemagluttinin repeat	NA|231aa|up_6|NZ_CP012046.1_5622845_5623538_-	NA	NA|168aa|up_5|NZ_CP012046.1_5624510_5625014_-	NA	NA|127aa|up_4|NZ_CP012046.1_5625068_5625449_-	cd05141, Barstar_evA4336-like, Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp	NA|59aa|up_3|NZ_CP012046.1_5625456_5625633_-	pfam00545, Ribonuclease, ribonuclease	NA|150aa|up_2|NZ_CP012046.1_5626465_5626915_-	NA	NA|580aa|up_1|NZ_CP012046.1_5635313_5637053_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|254aa|up_0|NZ_CP012046.1_5637326_5638088_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|394aa|down_0|NZ_CP012046.1_5640227_5641409_+	COG1565, COG1565, Uncharacterized conserved protein [Function unknown]	NA|368aa|down_1|NZ_CP012046.1_5641418_5642522_-	PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional	NA|690aa|down_2|NZ_CP012046.1_5642518_5644588_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|226aa|down_3|NZ_CP012046.1_5644864_5645542_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|477aa|down_4|NZ_CP012046.1_5645962_5647393_+	COG2308, COG2308, Uncharacterized conserved protein [Function unknown]	NA|331aa|down_5|NZ_CP012046.1_5647395_5648388_+	pfam04168, Alpha-E, A predicted alpha-helical domain with a conserved ER motif	NA|268aa|down_6|NZ_CP012046.1_5648401_5649205_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|288aa|down_7|NZ_CP012046.1_5649260_5650124_+	cd03765, proteasome_beta_bacterial, Bacterial proteasome, beta subunit	NA|333aa|down_8|NZ_CP012046.1_5650279_5651278_+	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|281aa|down_9|NZ_CP012046.1_5651445_5652288_-	TIGR00676, 510-methylenetetrahydrofolate_reductase
