assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001048375.2_M223	NZ_LT904854	Salmonella enterica subsp. enterica serovar Typhi strain M223 chromosome 1	1	572254-572354	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|448aa|up_9|NZ_LT904854.1_558332_559676_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_LT904854.1_560303_560756_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_LT904854.1_560783_562286_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_LT904854.1_562310_564989_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_LT904854.1_565209_565611_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_LT904854.1_565610_566555_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_LT904854.1_566705_566975_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_LT904854.1_567216_569352_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_LT904854.1_569461_570346_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_LT904854.1_570451_570532_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_LT904854.1_572567_573812_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_LT904854.1_573902_574910_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_LT904854.1_575087_575984_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_LT904854.1_575974_576970_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_LT904854.1_577186_577711_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_LT904854.1_577704_578208_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_LT904854.1_578194_578512_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_LT904854.1_578549_578993_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_LT904854.1_578972_579491_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_LT904854.1_579621_580257_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_001048375.2_M223	NZ_LT904854	Salmonella enterica subsp. enterica serovar Typhi strain M223 chromosome 1	2	947370-947790	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_LT904854.1_934395_936108_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_LT904854.1_936183_936918_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|NZ_LT904854.1_937005_937959_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|512aa|up_6|NZ_LT904854.1_941397_942933_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_LT904854.1_942949_943552_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_LT904854.1_943574_944633_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_LT904854.1_944642_945368_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_LT904854.1_945367_946072_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_LT904854.1_946071_946989_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_LT904854.1_946991_947285_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_LT904854.1_947804_948851_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LT904854.1_949101_950010_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_LT904854.1_950019_951459_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LT904854.1_951445_952051_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LT904854.1_952101_952425_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LT904854.1_952615_952927_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LT904854.1_952945_953656_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LT904854.1_953655_954135_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LT904854.1_954131_955181_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LT904854.1_955161_955923_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
