assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	1	423685-423785	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP007657.1_415257_415467_-,NA|128aa|up_6|NZ_CP007657.1_416291_416675_-,NA|34aa|up_0|NZ_CP007657.1_422909_423011_+,NA|221aa|down_1|NZ_CP007657.1_424875_425538_-,NA|179aa|down_7|NZ_CP007657.1_431629_432166_-	NA|84aa|up_9|NZ_CP007657.1_414967_415219_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP007657.1_415257_415467_-	NA	NA|194aa|up_7|NZ_CP007657.1_415644_416226_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP007657.1_416291_416675_-	NA	NA|209aa|up_5|NZ_CP007657.1_416929_417556_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP007657.1_418000_419524_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP007657.1_419539_420109_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP007657.1_420600_421356_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP007657.1_421436_422825_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP007657.1_422909_423011_+	NA	NA|319aa|down_0|NZ_CP007657.1_423801_424758_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP007657.1_424875_425538_-	NA	NA|136aa|down_2|NZ_CP007657.1_425680_426088_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP007657.1_426600_427179_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP007657.1_427178_428447_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP007657.1_428484_429951_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP007657.1_429975_431517_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP007657.1_431629_432166_-	NA	NA|235aa|down_8|NZ_CP007657.1_432558_433263_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP007657.1_433661_433934_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	2	667957-668049	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP007657.1_664440_664548_+,NA|169aa|down_4|NZ_CP007657.1_671796_672303_+,NA|239aa|down_5|NZ_CP007657.1_672464_673181_+	NA|313aa|up_9|NZ_CP007657.1_658642_659581_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP007657.1_659791_660328_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP007657.1_660496_660973_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP007657.1_661012_662308_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP007657.1_662335_662857_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP007657.1_663355_664366_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP007657.1_664440_664548_+	NA	NA|139aa|up_2|NZ_CP007657.1_664640_665057_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP007657.1_665053_666715_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP007657.1_667103_667739_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP007657.1_668117_669005_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP007657.1_669152_670103_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP007657.1_670157_670877_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP007657.1_670860_671661_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP007657.1_671796_672303_+	NA	NA|239aa|down_5|NZ_CP007657.1_672464_673181_+	NA	NA|263aa|down_6|NZ_CP007657.1_673349_674138_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP007657.1_674388_674763_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP007657.1_675710_676640_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP007657.1_676834_677059_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	3	730942-731040	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP007657.1_728969_729086_+,NA|230aa|down_2|NZ_CP007657.1_732861_733551_-,NA|100aa|down_5|NZ_CP007657.1_734720_735020_+	NA|336aa|up_9|NZ_CP007657.1_720749_721757_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP007657.1_722344_723142_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP007657.1_723502_724147_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP007657.1_724843_726994_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP007657.1_727139_727499_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP007657.1_727688_728405_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP007657.1_728404_728878_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP007657.1_728969_729086_+	NA	NA|215aa|up_1|NZ_CP007657.1_729230_729875_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP007657.1_729990_730857_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP007657.1_731057_732278_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP007657.1_732274_732763_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP007657.1_732861_733551_-	NA	NA|148aa|down_3|NZ_CP007657.1_733677_734121_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_CP007657.1_734187_734583_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_CP007657.1_734720_735020_+	NA	NA|181aa|down_6|NZ_CP007657.1_735099_735642_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP007657.1_735737_736304_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP007657.1_736305_736764_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP007657.1_736766_737450_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	4	830348-830433	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	830378-830403|830378-830403|830378-830403|830378-830403|830378-830403|830378-830403	NZ_CP007657.1_793340-793315|NZ_CP007657.1_1154718-1154693|NZ_CP007657.1_2788441-2788466|NZ_CP007657.1_2788497-2788522|NZ_CP007657.1_793396-793371|NZ_CP007657.1_936592-936567	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP007657.1_817600_818440_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP007657.1_818613_819264_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP007657.1_819260_819497_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP007657.1_819765_821751_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP007657.1_821758_824605_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP007657.1_825266_826199_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP007657.1_826204_827044_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP007657.1_827051_827537_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP007657.1_827544_828984_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP007657.1_829050_829986_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP007657.1_830865_831777_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP007657.1_831773_832769_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP007657.1_832878_833823_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP007657.1_834396_834984_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP007657.1_835226_836129_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP007657.1_836831_837461_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP007657.1_838277_839291_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP007657.1_839343_840354_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP007657.1_840492_841683_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP007657.1_841804_842566_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	5	873732-873813	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	873756-873789|873756-873789	NZ_CP007657.1_1362910-1362877|NZ_CP007657.1_1452063-1452096	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP007657.1_866835_867417_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP007657.1_867489_868107_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP007657.1_868261_868756_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP007657.1_869154_869577_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP007657.1_869724_870441_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP007657.1_870523_871063_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP007657.1_871212_871533_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP007657.1_871676_872033_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP007657.1_872190_872571_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP007657.1_872749_873628_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP007657.1_874369_874756_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP007657.1_874748_875045_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP007657.1_875294_876320_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP007657.1_876312_877008_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP007657.1_877025_877847_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP007657.1_877989_879210_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP007657.1_879297_880026_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP007657.1_880049_880778_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP007657.1_880794_881253_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP007657.1_881264_881597_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	6	936593-936875	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	8	936623-936648|936623-936648|936623-936648|936623-936648|936623-936648|936737-936762|936737-936762|936737-936762	NZ_CP007657.1_936567-936592|NZ_CP007657.1_793315-793340|NZ_CP007657.1_1154693-1154718|NZ_CP007657.1_2788466-2788441|NZ_CP007657.1_2788522-2788497|NZ_CP007657.1_830459-830434|NZ_CP007657.1_1989289-1989264|NZ_CP007657.1_385018-385043	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP007657.1_925481_926978_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP007657.1_926970_927312_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP007657.1_927311_927740_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP007657.1_927732_930138_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP007657.1_930268_930652_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP007657.1_930715_931309_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP007657.1_931724_932102_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP007657.1_932463_933591_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP007657.1_933898_935089_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP007657.1_935197_936442_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP007657.1_936944_937874_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP007657.1_938115_939495_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP007657.1_939484_940690_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP007657.1_941040_942372_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP007657.1_942696_943272_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP007657.1_943276_943801_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP007657.1_943816_944392_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP007657.1_944551_948028_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP007657.1_948028_951682_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP007657.1_951847_952750_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	7	1070264-1070351	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP007657.1_1070360_1070495_-,NA|432aa|down_1|NZ_CP007657.1_1070646_1071942_+	NA|224aa|up_9|NZ_CP007657.1_1058054_1058726_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP007657.1_1058718_1060908_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP007657.1_1060886_1062371_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP007657.1_1062363_1063392_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP007657.1_1063394_1063961_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP007657.1_1063975_1065454_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP007657.1_1065475_1066723_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP007657.1_1066987_1067794_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP007657.1_1067786_1069187_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP007657.1_1069201_1069777_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP007657.1_1070360_1070495_-	NA	NA|432aa|down_1|NZ_CP007657.1_1070646_1071942_+	NA	NA|391aa|down_2|NZ_CP007657.1_1072366_1073539_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP007657.1_1073592_1074135_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP007657.1_1074288_1074555_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP007657.1_1074557_1076276_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP007657.1_1076512_1076746_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP007657.1_1076943_1078305_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP007657.1_1078301_1079321_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP007657.1_1079453_1080116_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	8	1154523-1154709	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	31	1154542-1154578|1154542-1154578|1154542-1154578|1154542-1154578|1154542-1154578|1154542-1154578|1154542-1154578|1154542-1154578|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154598-1154634|1154654-1154690|1154654-1154690|1154654-1154690|1154654-1154690|1154654-1154690|1154654-1154690|1154654-1154690|1154654-1154690|1154654-1154690|1154654-1154690|1154654-1154690	NZ_CP007657.1_1856006-1856042|NZ_CP007657.1_824952-824916|NZ_CP007657.1_825007-824971|NZ_CP007657.1_873829-873793|NZ_CP007657.1_1677479-1677443|NZ_CP007657.1_2000078-2000042|NZ_CP007657.1_2539237-2539273|NZ_CP007657.1_2788560-2788524|NZ_CP007657.1_385035-385071|NZ_CP007657.1_830442-830406|NZ_CP007657.1_1054012-1053976|NZ_CP007657.1_1362836-1362872|NZ_CP007657.1_1989272-1989236|NZ_CP007657.1_1452137-1452101|NZ_CP007657.1_1677537-1677501|NZ_CP007657.1_2622923-2622887|NZ_CP007657.1_1150630-1150666|NZ_CP007657.1_1154710-1154746|NZ_CP007657.1_1989213-1989177|NZ_CP007657.1_2788505-2788469|NZ_CP007657.1_139416-139452|NZ_CP007657.1_666995-667031|NZ_CP007657.1_782953-782917|NZ_CP007657.1_830498-830462|NZ_CP007657.1_1362894-1362930|NZ_CP007657.1_1452079-1452043|NZ_CP007657.1_1990729-1990693|NZ_CP007657.1_1990788-1990752|NZ_CP007657.1_1080208-1080172|NZ_CP007657.1_2513990-2513954|NZ_CP007657.1_1150686-1150722	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|31aa|up_9|NZ_CP007657.1_1147346_1147439_-,NA|169aa|up_7|NZ_CP007657.1_1148471_1148978_+,NA|62aa|up_4|NZ_CP007657.1_1150890_1151076_-,NA|78aa|up_3|NZ_CP007657.1_1151697_1151931_-,NA|49aa|up_1|NZ_CP007657.1_1154039_1154186_+,NA|75aa|up_0|NZ_CP007657.1_1154142_1154367_+,NA|76aa|down_6|NZ_CP007657.1_1161722_1161950_+	NA|31aa|up_9|NZ_CP007657.1_1147346_1147439_-	NA	NA|134aa|up_8|NZ_CP007657.1_1147398_1147800_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP007657.1_1148471_1148978_+	NA	NA|166aa|up_6|NZ_CP007657.1_1149236_1149734_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP007657.1_1149887_1150238_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP007657.1_1150890_1151076_-	NA	NA|78aa|up_3|NZ_CP007657.1_1151697_1151931_-	NA	NA|320aa|up_2|NZ_CP007657.1_1152407_1153367_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP007657.1_1154039_1154186_+	NA	NA|75aa|up_0|NZ_CP007657.1_1154142_1154367_+	NA	NA|239aa|down_0|NZ_CP007657.1_1154923_1155640_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP007657.1_1155747_1156473_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP007657.1_1156567_1157293_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP007657.1_1157730_1158732_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP007657.1_1158754_1159687_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP007657.1_1159858_1161415_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP007657.1_1161722_1161950_+	NA	NA|316aa|down_7|NZ_CP007657.1_1162254_1163202_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP007657.1_1163450_1163639_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP007657.1_1164550_1164685_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	9	1856082-1856292	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1856120-1856140|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856179-1856198|1856237-1856254	NZ_CP007657.1_1856061-1856081|NZ_CP007657.1_139359-139378|NZ_CP007657.1_303274-303293|NZ_CP007657.1_385149-385168|NZ_CP007657.1_385204-385223|NZ_CP007657.1_824952-824933|NZ_CP007657.1_825007-824988|NZ_CP007657.1_830556-830537|NZ_CP007657.1_830614-830595|NZ_CP007657.1_873829-873810|NZ_CP007657.1_956293-956274|NZ_CP007657.1_1080266-1080247|NZ_CP007657.1_1362778-1362797|NZ_CP007657.1_1452195-1452176|NZ_CP007657.1_1677479-1677460|NZ_CP007657.1_1856006-1856025|NZ_CP007657.1_1990670-1990651|NZ_CP007657.1_2539237-2539256|NZ_CP007657.1_2788560-2788541|NZ_CP007657.1_303329-303348|NZ_CP007657.1_837823-837804|NZ_CP007657.1_837880-837861|NZ_CP007657.1_1412123-1412104|NZ_CP007657.1_1711447-1711428|NZ_CP007657.1_2000078-2000059|NZ_CP007657.1_797915-797934|NZ_CP007657.1_1856064-1856081	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP007657.1_1846601_1847198_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP007657.1_1847226_1848084_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP007657.1_1848183_1848495_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP007657.1_1848559_1849636_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP007657.1_1849722_1850034_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP007657.1_1850158_1851001_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP007657.1_1851470_1852115_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP007657.1_1852129_1852921_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP007657.1_1853470_1854319_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP007657.1_1854322_1855732_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP007657.1_1856595_1857018_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP007657.1_1857034_1857730_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP007657.1_1857726_1859388_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP007657.1_1859794_1861063_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP007657.1_1861179_1867740_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP007657.1_1868065_1868377_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP007657.1_1868398_1870816_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP007657.1_1871103_1872285_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP007657.1_1872394_1873348_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP007657.1_1873344_1873908_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	10	2223958-2224108	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP007657.1_2218829_2219060_-,NA|364aa|up_0|NZ_CP007657.1_2222848_2223940_+,NA|35aa|down_0|NZ_CP007657.1_2224439_2224544_-,NA|31aa|down_2|NZ_CP007657.1_2226655_2226748_+	NA|237aa|up_9|NZ_CP007657.1_2214439_2215150_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP007657.1_2215270_2215714_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP007657.1_2215913_2216327_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP007657.1_2216784_2218158_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP007657.1_2218829_2219060_-	NA	NA|313aa|up_4|NZ_CP007657.1_2219090_2220029_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP007657.1_2220463_2221129_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP007657.1_2221280_2221601_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP007657.1_2221602_2222583_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP007657.1_2222848_2223940_+	NA	NA|35aa|down_0|NZ_CP007657.1_2224439_2224544_-	NA	NA|379aa|down_1|NZ_CP007657.1_2225230_2226367_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP007657.1_2226655_2226748_+	NA	NA|286aa|down_3|NZ_CP007657.1_2227452_2228310_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP007657.1_2228377_2229160_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP007657.1_2229391_2231197_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP007657.1_2231877_2233416_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP007657.1_2233450_2235583_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP007657.1_2235594_2236029_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP007657.1_2236028_2237135_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001046095.2_ASM104609v2	NZ_CP007657	Staphylococcus aureus strain V2200 chromosome, complete genome	11	2347876-2348069	4	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	12	2347899-2347931|2347899-2347931|2347899-2347931|2347899-2347931|2347899-2347931|2347955-2347990|2347955-2347990|2347955-2347990|2348014-2348046|2348014-2348046|2348014-2348046|2348014-2348046	NZ_CP007657.1_830414-830446|NZ_CP007657.1_1362864-1362832|NZ_CP007657.1_1452109-1452141|NZ_CP007657.1_1989244-1989276|NZ_CP007657.1_2622895-2622927|NZ_CP007657.1_1856037-1856002|NZ_CP007657.1_1677448-1677483|NZ_CP007657.1_2000047-2000082|NZ_CP007657.1_830414-830446|NZ_CP007657.1_1362864-1362832|NZ_CP007657.1_1989244-1989276|NZ_CP007657.1_2622895-2622927	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP007657.1_2338403_2338568_+,NA|106aa|up_8|NZ_CP007657.1_2338812_2339130_+,NA|84aa|up_5|NZ_CP007657.1_2344254_2344506_+,NA|57aa|up_0|NZ_CP007657.1_2347645_2347816_+,NA	NA|55aa|up_9|NZ_CP007657.1_2338403_2338568_+	NA	NA|106aa|up_8|NZ_CP007657.1_2338812_2339130_+	NA	NA|1056aa|up_7|NZ_CP007657.1_2339316_2342484_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP007657.1_2342600_2343866_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP007657.1_2344254_2344506_+	NA	NA|255aa|up_4|NZ_CP007657.1_2344497_2345262_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP007657.1_2345423_2345864_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP007657.1_2345856_2347068_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP007657.1_2347169_2347520_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP007657.1_2347645_2347816_+	NA	NA|341aa|down_0|NZ_CP007657.1_2348210_2349233_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP007657.1_2349252_2349852_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP007657.1_2349858_2350092_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP007657.1_2350097_2350544_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP007657.1_2350557_2351043_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP007657.1_2351039_2352299_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP007657.1_2352361_2352856_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP007657.1_2352857_2353364_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP007657.1_2353394_2354399_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP007657.1_2354568_2355174_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
