assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	1	399292-399392	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT	NA|70aa|up_8|NZ_CP007676.1_390864_391074_-,NA|128aa|up_6|NZ_CP007676.1_391898_392282_-,NA|34aa|up_0|NZ_CP007676.1_398516_398618_+,NA|221aa|down_1|NZ_CP007676.1_400482_401145_-,NA|179aa|down_7|NZ_CP007676.1_407236_407773_-	NA|84aa|up_9|NZ_CP007676.1_390574_390826_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP007676.1_390864_391074_-	NA	NA|194aa|up_7|NZ_CP007676.1_391251_391833_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP007676.1_391898_392282_-	NA	NA|209aa|up_5|NZ_CP007676.1_392536_393163_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP007676.1_393607_395131_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP007676.1_395146_395716_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP007676.1_396207_396963_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP007676.1_397043_398432_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP007676.1_398516_398618_+	NA	NA|319aa|down_0|NZ_CP007676.1_399408_400365_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP007676.1_400482_401145_-	NA	NA|136aa|down_2|NZ_CP007676.1_401287_401695_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP007676.1_402207_402786_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP007676.1_402785_404054_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP007676.1_404091_405558_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP007676.1_405582_407124_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP007676.1_407236_407773_-	NA	NA|235aa|down_8|NZ_CP007676.1_408165_408870_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP007676.1_409268_409541_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	2	656106-656198	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT	NA|36aa|up_3|NZ_CP007676.1_652590_652698_+,NA|169aa|down_4|NZ_CP007676.1_659945_660452_+,NA|239aa|down_5|NZ_CP007676.1_660613_661330_+	NA|313aa|up_9|NZ_CP007676.1_646792_647731_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP007676.1_647941_648478_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP007676.1_648646_649123_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP007676.1_649162_650458_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP007676.1_650485_651007_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP007676.1_651505_652516_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP007676.1_652590_652698_+	NA	NA|139aa|up_2|NZ_CP007676.1_652790_653207_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP007676.1_653203_654865_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP007676.1_655252_655888_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP007676.1_656266_657154_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP007676.1_657301_658252_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP007676.1_658306_659026_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP007676.1_659009_659810_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP007676.1_659945_660452_+	NA	NA|239aa|down_5|NZ_CP007676.1_660613_661330_+	NA	NA|263aa|down_6|NZ_CP007676.1_661498_662287_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP007676.1_662537_662912_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP007676.1_663859_664789_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP007676.1_664983_665208_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	3	818695-818780	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	818725-818750|818725-818750|818725-818750|818725-818750|818725-818750|818725-818750	NZ_CP007676.1_781687-781662|NZ_CP007676.1_924940-924915|NZ_CP007676.1_2800474-2800499|NZ_CP007676.1_2800530-2800555|NZ_CP007676.1_781743-781718|NZ_CP007676.1_924884-924859	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL,RT	NA,NA	NA|280aa|up_9|NZ_CP007676.1_805947_806787_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP007676.1_806960_807611_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP007676.1_807607_807844_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP007676.1_808112_810098_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP007676.1_810105_812952_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP007676.1_813613_814546_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP007676.1_814551_815391_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP007676.1_815398_815884_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP007676.1_815891_817331_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP007676.1_817397_818333_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP007676.1_819212_820124_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP007676.1_820120_821116_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP007676.1_821225_822170_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP007676.1_822743_823331_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP007676.1_823573_824476_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP007676.1_825177_825807_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP007676.1_826566_827580_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP007676.1_827632_828643_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP007676.1_828781_829972_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP007676.1_830093_830855_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	4	862024-862105	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	862048-862081|862048-862081	NZ_CP007676.1_1350978-1350945|NZ_CP007676.1_1439962-1439995	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT	NA,NA	NA|194aa|up_9|NZ_CP007676.1_855127_855709_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP007676.1_855781_856399_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP007676.1_856553_857048_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP007676.1_857446_857869_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP007676.1_858016_858733_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP007676.1_858815_859355_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP007676.1_859504_859825_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP007676.1_859968_860325_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP007676.1_860482_860863_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP007676.1_861041_861920_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP007676.1_862661_863048_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP007676.1_863040_863337_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP007676.1_863586_864612_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP007676.1_864604_865300_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP007676.1_865317_866139_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP007676.1_866281_867502_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP007676.1_867589_868318_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP007676.1_868341_869070_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP007676.1_869086_869545_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP007676.1_869556_869889_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	5	1058443-1058530	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT	NA,NA|45aa|down_0|NZ_CP007676.1_1058539_1058674_-,NA|432aa|down_1|NZ_CP007676.1_1058825_1060121_+	NA|224aa|up_9|NZ_CP007676.1_1046233_1046905_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP007676.1_1046897_1049087_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP007676.1_1049065_1050550_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP007676.1_1050542_1051571_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP007676.1_1051573_1052140_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP007676.1_1052154_1053633_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP007676.1_1053654_1054902_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP007676.1_1055166_1055973_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP007676.1_1055965_1057366_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP007676.1_1057380_1057956_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP007676.1_1058539_1058674_-	NA	NA|432aa|down_1|NZ_CP007676.1_1058825_1060121_+	NA	NA|391aa|down_2|NZ_CP007676.1_1060545_1061718_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP007676.1_1061771_1062314_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP007676.1_1062467_1062734_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP007676.1_1062736_1064455_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP007676.1_1064691_1064925_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP007676.1_1065122_1066484_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP007676.1_1066480_1067500_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP007676.1_1067632_1068295_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	6	1844008-1844218	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1844046-1844066|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844105-1844124|1844163-1844180	NZ_CP007676.1_1843987-1844007|NZ_CP007676.1_135684-135703|NZ_CP007676.1_278881-278900|NZ_CP007676.1_360756-360775|NZ_CP007676.1_360811-360830|NZ_CP007676.1_813299-813280|NZ_CP007676.1_813354-813335|NZ_CP007676.1_818903-818884|NZ_CP007676.1_818961-818942|NZ_CP007676.1_862121-862102|NZ_CP007676.1_944471-944452|NZ_CP007676.1_1068445-1068426|NZ_CP007676.1_1350846-1350865|NZ_CP007676.1_1440094-1440075|NZ_CP007676.1_1665445-1665426|NZ_CP007676.1_1843932-1843951|NZ_CP007676.1_2001100-2001081|NZ_CP007676.1_2549934-2549953|NZ_CP007676.1_2800593-2800574|NZ_CP007676.1_278936-278955|NZ_CP007676.1_826169-826150|NZ_CP007676.1_1142722-1142741|NZ_CP007676.1_1400020-1400001|NZ_CP007676.1_1699411-1699392|NZ_CP007676.1_2010449-2010430|NZ_CP007676.1_786262-786281|NZ_CP007676.1_1843990-1844007	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT	NA,NA	NA|199aa|up_9|NZ_CP007676.1_1834527_1835124_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP007676.1_1835152_1836010_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP007676.1_1836109_1836421_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP007676.1_1836485_1837562_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP007676.1_1837648_1837960_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP007676.1_1838084_1838927_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP007676.1_1839396_1840041_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP007676.1_1840055_1840847_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP007676.1_1841396_1842245_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP007676.1_1842248_1843658_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP007676.1_1844521_1844944_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP007676.1_1844960_1845656_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP007676.1_1845652_1847314_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP007676.1_1847720_1848989_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP007676.1_1849847_1856408_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP007676.1_1856733_1857045_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP007676.1_1857066_1859484_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP007676.1_1859771_1860953_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP007676.1_1861062_1862016_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP007676.1_1862012_1862576_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	7	1999651-1999729	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1999674-1999706|1999674-1999706|1999674-1999706|1999674-1999706|1999674-1999706|1999674-1999706	NZ_CP007676.1_818761-818793|NZ_CP007676.1_1142806-1142774|NZ_CP007676.1_1350932-1350900|NZ_CP007676.1_1665475-1665507|NZ_CP007676.1_2635124-2635156|NZ_CP007676.1_1440008-1440040	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT	NA|92aa|up_6|NZ_CP007676.1_1993845_1994121_+,NA|129aa|up_1|NZ_CP007676.1_1998106_1998493_-,NA|138aa|down_1|NZ_CP007676.1_2001412_2001826_-,NA|37aa|down_2|NZ_CP007676.1_2001854_2001965_-,NA|31aa|down_6|NZ_CP007676.1_2004970_2005063_-	NA|419aa|up_9|NZ_CP007676.1_1991768_1993025_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP007676.1_1993027_1993228_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP007676.1_1993374_1993839_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP007676.1_1993845_1994121_+	NA	NA|406aa|up_5|NZ_CP007676.1_1994398_1995616_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP007676.1_1995731_1996361_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP007676.1_1996350_1997394_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP007676.1_1997390_1998092_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP007676.1_1998106_1998493_-	NA	NA|253aa|up_0|NZ_CP007676.1_1998709_1999468_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP007676.1_1999995_2000982_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP007676.1_2001412_2001826_-	NA	NA|37aa|down_2|NZ_CP007676.1_2001854_2001965_-	NA	NA|244aa|down_3|NZ_CP007676.1_2002050_2002782_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP007676.1_2002783_2004097_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP007676.1_2004388_2004889_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP007676.1_2004970_2005063_-	NA	DEDDh|185aa|down_7|NZ_CP007676.1_2005277_2005832_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP007676.1_2005899_2006970_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP007676.1_2007216_2007747_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	8	2234543-2234693	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT	NA|77aa|up_5|NZ_CP007676.1_2229414_2229645_-,NA|364aa|up_0|NZ_CP007676.1_2233433_2234525_+,NA|35aa|down_0|NZ_CP007676.1_2235024_2235129_-,NA|31aa|down_2|NZ_CP007676.1_2237240_2237333_+	NA|237aa|up_9|NZ_CP007676.1_2225024_2225735_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP007676.1_2225855_2226299_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP007676.1_2226498_2226912_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP007676.1_2227369_2228743_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP007676.1_2229414_2229645_-	NA	NA|313aa|up_4|NZ_CP007676.1_2229675_2230614_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP007676.1_2231048_2231714_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP007676.1_2231865_2232186_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP007676.1_2232187_2233168_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP007676.1_2233433_2234525_+	NA	NA|35aa|down_0|NZ_CP007676.1_2235024_2235129_-	NA	NA|379aa|down_1|NZ_CP007676.1_2235815_2236952_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP007676.1_2237240_2237333_+	NA	NA|286aa|down_3|NZ_CP007676.1_2238037_2238895_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP007676.1_2238962_2239745_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP007676.1_2239976_2241782_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP007676.1_2242462_2244001_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP007676.1_2244035_2246168_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP007676.1_2246179_2246614_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP007676.1_2246613_2247720_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001045995.2_ASM104599v2	NZ_CP007676	Staphylococcus aureus strain HUV05 chromosome, complete genome	9	2358394-2358587	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2358417-2358449|2358417-2358449|2358417-2358449|2358417-2358449|2358417-2358449|2358473-2358508|2358473-2358508|2358473-2358508|2358473-2358508|2358532-2358564|2358532-2358564|2358532-2358564|2358532-2358564	NZ_CP007676.1_818761-818793|NZ_CP007676.1_1142806-1142774|NZ_CP007676.1_1350932-1350900|NZ_CP007676.1_1440008-1440040|NZ_CP007676.1_2635124-2635156|NZ_CP007676.1_1142753-1142718|NZ_CP007676.1_1843963-1843928|NZ_CP007676.1_1665414-1665449|NZ_CP007676.1_2010418-2010453|NZ_CP007676.1_818761-818793|NZ_CP007676.1_1142806-1142774|NZ_CP007676.1_1350932-1350900|NZ_CP007676.1_2635124-2635156	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT	NA|55aa|up_9|NZ_CP007676.1_2348921_2349086_+,NA|106aa|up_8|NZ_CP007676.1_2349330_2349648_+,NA|84aa|up_5|NZ_CP007676.1_2354772_2355024_+,NA|57aa|up_0|NZ_CP007676.1_2358163_2358334_+,NA	NA|55aa|up_9|NZ_CP007676.1_2348921_2349086_+	NA	NA|106aa|up_8|NZ_CP007676.1_2349330_2349648_+	NA	NA|1056aa|up_7|NZ_CP007676.1_2349834_2353002_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP007676.1_2353118_2354384_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP007676.1_2354772_2355024_+	NA	NA|255aa|up_4|NZ_CP007676.1_2355015_2355780_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP007676.1_2355941_2356382_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP007676.1_2356374_2357586_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP007676.1_2357687_2358038_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP007676.1_2358163_2358334_+	NA	NA|341aa|down_0|NZ_CP007676.1_2358728_2359751_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP007676.1_2359770_2360370_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP007676.1_2360376_2360610_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP007676.1_2360615_2361062_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP007676.1_2361075_2361561_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP007676.1_2361557_2362817_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP007676.1_2362879_2363374_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP007676.1_2363375_2363882_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP007676.1_2363912_2364917_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP007676.1_2365086_2365692_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
