assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001045795.2_ASM104579v2	NZ_CP007672	Staphylococcus aureus strain CA12 chromosome, complete genome	1	423208-423308	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP007672.1_414780_414990_-,NA|128aa|up_6|NZ_CP007672.1_415814_416198_-,NA|34aa|up_0|NZ_CP007672.1_422432_422534_+,NA|221aa|down_1|NZ_CP007672.1_424398_425061_-,NA|179aa|down_7|NZ_CP007672.1_431152_431689_-	NA|84aa|up_9|NZ_CP007672.1_414490_414742_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP007672.1_414780_414990_-	NA	NA|194aa|up_7|NZ_CP007672.1_415167_415749_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP007672.1_415814_416198_-	NA	NA|209aa|up_5|NZ_CP007672.1_416452_417079_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP007672.1_417523_419047_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP007672.1_419062_419632_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP007672.1_420123_420879_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP007672.1_420959_422348_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP007672.1_422432_422534_+	NA	NA|319aa|down_0|NZ_CP007672.1_423324_424281_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP007672.1_424398_425061_-	NA	NA|136aa|down_2|NZ_CP007672.1_425203_425611_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP007672.1_426123_426702_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP007672.1_426701_427970_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP007672.1_428007_429474_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP007672.1_429498_431040_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP007672.1_431152_431689_-	NA	NA|235aa|down_8|NZ_CP007672.1_432081_432786_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP007672.1_433184_433457_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001045795.2_ASM104579v2	NZ_CP007672	Staphylococcus aureus strain CA12 chromosome, complete genome	2	667534-667626	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP007672.1_664018_664126_+,NA|169aa|down_4|NZ_CP007672.1_671373_671880_+,NA|239aa|down_5|NZ_CP007672.1_672041_672758_+	NA|313aa|up_9|NZ_CP007672.1_658220_659159_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP007672.1_659369_659906_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP007672.1_660074_660551_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP007672.1_660590_661886_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP007672.1_661913_662435_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP007672.1_662933_663944_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP007672.1_664018_664126_+	NA	NA|139aa|up_2|NZ_CP007672.1_664218_664635_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP007672.1_664631_666293_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP007672.1_666680_667316_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP007672.1_667694_668582_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP007672.1_668729_669680_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP007672.1_669734_670454_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP007672.1_670437_671238_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP007672.1_671373_671880_+	NA	NA|239aa|down_5|NZ_CP007672.1_672041_672758_+	NA	NA|263aa|down_6|NZ_CP007672.1_672926_673715_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP007672.1_673965_674340_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP007672.1_675287_676217_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP007672.1_676411_676636_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001045795.2_ASM104579v2	NZ_CP007672	Staphylococcus aureus strain CA12 chromosome, complete genome	3	830115-830200	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	830145-830170|830145-830170|830145-830170|830145-830170|830145-830170	NZ_CP007672.1_793053-793028|NZ_CP007672.1_2797778-2797803|NZ_CP007672.1_2797834-2797859|NZ_CP007672.1_793109-793084|NZ_CP007672.1_922298-922273	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP007672.1_817312_818152_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP007672.1_818325_818976_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP007672.1_818972_819209_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP007672.1_819477_821463_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP007672.1_821470_824317_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP007672.1_825033_825966_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP007672.1_825971_826811_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP007672.1_826818_827304_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP007672.1_827311_828751_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP007672.1_828817_829753_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP007672.1_830632_831544_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP007672.1_831540_832536_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP007672.1_832645_833590_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP007672.1_834163_834751_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP007672.1_834993_835896_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP007672.1_836597_837227_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP007672.1_837986_839000_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP007672.1_839052_840063_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP007672.1_840201_841392_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP007672.1_841513_842275_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001045795.2_ASM104579v2	NZ_CP007672	Staphylococcus aureus strain CA12 chromosome, complete genome	4	873444-873525	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	873468-873501|873468-873501	NZ_CP007672.1_1349192-1349159|NZ_CP007672.1_1438351-1438384	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP007672.1_866547_867129_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP007672.1_867201_867819_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP007672.1_867973_868468_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP007672.1_868866_869289_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP007672.1_869436_870153_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP007672.1_870235_870775_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP007672.1_870924_871245_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP007672.1_871388_871745_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP007672.1_871902_872283_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP007672.1_872461_873340_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP007672.1_874081_874468_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP007672.1_874460_874757_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP007672.1_875006_876032_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP007672.1_876024_876720_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP007672.1_876737_877559_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP007672.1_877912_878107_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP007672.1_878339_879191_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP007672.1_879518_880280_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP007672.1_880377_881685_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP007672.1_881790_883041_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001045795.2_ASM104579v2	NZ_CP007672	Staphylococcus aureus strain CA12 chromosome, complete genome	5	922299-922637	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	3	8	922329-922354|922329-922354|922385-922410|922385-922410|922385-922410|922385-922410|922499-922524|922499-922524	NZ_CP007672.1_922273-922298|NZ_CP007672.1_873828-873803|NZ_CP007672.1_922273-922298|NZ_CP007672.1_793028-793053|NZ_CP007672.1_2797803-2797778|NZ_CP007672.1_2797859-2797834|NZ_CP007672.1_830226-830201|NZ_CP007672.1_384541-384566	NA	5	5	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP007672.1_911187_912684_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP007672.1_912676_913018_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP007672.1_913017_913446_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP007672.1_913438_915844_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP007672.1_915974_916358_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP007672.1_916421_917015_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP007672.1_917430_917808_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP007672.1_918169_919297_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP007672.1_919604_920795_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP007672.1_920903_922148_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP007672.1_922706_923636_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP007672.1_923877_925257_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP007672.1_925246_926452_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP007672.1_926802_928134_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP007672.1_928458_929034_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP007672.1_929038_929563_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP007672.1_929578_930154_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP007672.1_930313_933790_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP007672.1_933790_937444_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP007672.1_937609_938512_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001045795.2_ASM104579v2	NZ_CP007672	Staphylococcus aureus strain CA12 chromosome, complete genome	6	1998921-1998999	5	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1998944-1998976|1998944-1998976|1998944-1998976|1998944-1998976|1998944-1998976|1998944-1998976	NZ_CP007672.1_830181-830213|NZ_CP007672.1_1140327-1140295|NZ_CP007672.1_1349146-1349114|NZ_CP007672.1_1663858-1663890|NZ_CP007672.1_2633759-2633791|NZ_CP007672.1_1438397-1438429	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP007672.1_1993115_1993391_+,NA|129aa|up_1|NZ_CP007672.1_1997376_1997763_-,NA|138aa|down_1|NZ_CP007672.1_2000741_2001155_-,NA|37aa|down_2|NZ_CP007672.1_2001183_2001294_-,NA|31aa|down_6|NZ_CP007672.1_2004299_2004392_-	NA|419aa|up_9|NZ_CP007672.1_1991038_1992295_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP007672.1_1992297_1992498_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP007672.1_1992644_1993109_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP007672.1_1993115_1993391_+	NA	NA|406aa|up_5|NZ_CP007672.1_1993668_1994886_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP007672.1_1995001_1995631_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP007672.1_1995620_1996664_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP007672.1_1996660_1997362_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP007672.1_1997376_1997763_-	NA	NA|253aa|up_0|NZ_CP007672.1_1997979_1998738_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP007672.1_1999265_2000252_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP007672.1_2000741_2001155_-	NA	NA|37aa|down_2|NZ_CP007672.1_2001183_2001294_-	NA	NA|244aa|down_3|NZ_CP007672.1_2001379_2002111_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP007672.1_2002112_2003426_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP007672.1_2003717_2004218_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP007672.1_2004299_2004392_-	NA	DEDDh|185aa|down_7|NZ_CP007672.1_2004606_2005161_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP007672.1_2005228_2006299_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP007672.1_2006545_2007076_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001045795.2_ASM104579v2	NZ_CP007672	Staphylococcus aureus strain CA12 chromosome, complete genome	7	2233878-2234028	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP007672.1_2228749_2228980_-,NA|364aa|up_0|NZ_CP007672.1_2232768_2233860_+,NA|35aa|down_0|NZ_CP007672.1_2234359_2234464_-,NA|31aa|down_2|NZ_CP007672.1_2236575_2236668_+	NA|237aa|up_9|NZ_CP007672.1_2224359_2225070_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP007672.1_2225190_2225634_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP007672.1_2225833_2226247_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP007672.1_2226704_2228078_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP007672.1_2228749_2228980_-	NA	NA|313aa|up_4|NZ_CP007672.1_2229010_2229949_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP007672.1_2230383_2231049_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP007672.1_2231200_2231521_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP007672.1_2231522_2232503_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP007672.1_2232768_2233860_+	NA	NA|35aa|down_0|NZ_CP007672.1_2234359_2234464_-	NA	NA|379aa|down_1|NZ_CP007672.1_2235150_2236287_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP007672.1_2236575_2236668_+	NA	NA|286aa|down_3|NZ_CP007672.1_2237372_2238230_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP007672.1_2238297_2239080_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP007672.1_2239311_2241117_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP007672.1_2241797_2243336_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP007672.1_2243370_2245503_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP007672.1_2245514_2245949_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP007672.1_2245948_2247055_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001045795.2_ASM104579v2	NZ_CP007672	Staphylococcus aureus strain CA12 chromosome, complete genome	8	2357795-2357988	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2357818-2357850|2357818-2357850|2357818-2357850|2357818-2357850|2357818-2357850|2357874-2357909|2357874-2357909|2357874-2357909|2357874-2357909|2357933-2357965|2357933-2357965|2357933-2357965|2357933-2357965	NZ_CP007672.1_830181-830213|NZ_CP007672.1_1140327-1140295|NZ_CP007672.1_1349146-1349114|NZ_CP007672.1_1438397-1438429|NZ_CP007672.1_2633759-2633791|NZ_CP007672.1_1140274-1140239|NZ_CP007672.1_1842347-1842312|NZ_CP007672.1_1663797-1663832|NZ_CP007672.1_2009747-2009782|NZ_CP007672.1_830181-830213|NZ_CP007672.1_1140327-1140295|NZ_CP007672.1_1349146-1349114|NZ_CP007672.1_2633759-2633791	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP007672.1_2348322_2348487_+,NA|106aa|up_8|NZ_CP007672.1_2348731_2349049_+,NA|84aa|up_5|NZ_CP007672.1_2354173_2354425_+,NA|57aa|up_0|NZ_CP007672.1_2357564_2357735_+,NA	NA|55aa|up_9|NZ_CP007672.1_2348322_2348487_+	NA	NA|106aa|up_8|NZ_CP007672.1_2348731_2349049_+	NA	NA|1056aa|up_7|NZ_CP007672.1_2349235_2352403_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP007672.1_2352519_2353785_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP007672.1_2354173_2354425_+	NA	NA|255aa|up_4|NZ_CP007672.1_2354416_2355181_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP007672.1_2355342_2355783_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP007672.1_2355775_2356987_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP007672.1_2357088_2357439_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP007672.1_2357564_2357735_+	NA	NA|341aa|down_0|NZ_CP007672.1_2358129_2359152_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP007672.1_2359171_2359771_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP007672.1_2359777_2360011_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP007672.1_2360016_2360463_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP007672.1_2360476_2360962_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP007672.1_2360958_2362218_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP007672.1_2362280_2362775_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP007672.1_2362776_2363283_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP007672.1_2363313_2364318_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP007672.1_2364487_2365093_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
