assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001042815.1_ASM104281v1	NZ_CP011958	Xanthomonas oryzae pv. oryzicola strain CFBP7331, complete genome	1	531851-532005	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	CCCATGCACTTGGTAACGTGGTTGCCTGACATGACCAAGCAGTGAAATCGCAGAT	55	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA|81aa|up_9|NZ_CP011958.1_518380_518623_+,NA|130aa|down_2|NZ_CP011958.1_535034_535424_-	NA|81aa|up_9|NZ_CP011958.1_518380_518623_+	NA	NA|504aa|up_8|NZ_CP011958.1_518676_520188_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|128aa|up_7|NZ_CP011958.1_520184_520568_-	pfam07653, SH3_2, Variant SH3 domain	NA|328aa|up_6|NZ_CP011958.1_520569_521553_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|363aa|up_5|NZ_CP011958.1_521632_522721_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|298aa|up_4|NZ_CP011958.1_524813_525707_+	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase	NA|503aa|up_3|NZ_CP011958.1_526149_527658_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|197aa|up_2|NZ_CP011958.1_527669_528260_+	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|163aa|up_1|NZ_CP011958.1_528615_529104_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|357aa|up_0|NZ_CP011958.1_529271_530342_+	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|442aa|down_0|NZ_CP011958.1_532125_533451_+	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	NA|323aa|down_1|NZ_CP011958.1_533560_534529_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|130aa|down_2|NZ_CP011958.1_535034_535424_-	NA	NA|118aa|down_3|NZ_CP011958.1_535820_536174_-	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|95aa|down_4|NZ_CP011958.1_536170_536455_-	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|169aa|down_5|NZ_CP011958.1_536451_536958_-	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|515aa|down_6|NZ_CP011958.1_536954_538499_-	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|125aa|down_7|NZ_CP011958.1_538495_538870_-	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|943aa|down_8|NZ_CP011958.1_538869_541698_-	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|162aa|down_9|NZ_CP011958.1_542243_542729_-	COG4539, COG4539, Predicted membrane protein [Function unknown]
GCF_001042815.1_ASM104281v1	NZ_CP011958	Xanthomonas oryzae pv. oryzicola strain CFBP7331, complete genome	2	1639670-1639781	2	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	TAATGAAAACTGGCAGTTCCAGCACGCC	28	1	7	1639698-1639753|1639698-1639753|1639698-1639753|1639698-1639753|1639698-1639753|1639698-1639753|1639698-1639753	NZ_CP011958.1_157956-158011|NZ_CP011958.1_506792-506737|NZ_CP011958.1_1134590-1134535|NZ_CP011958.1_3741833-3741888|NZ_CP011958.1_4658276-4658331|NZ_CP011958.1_4861419-4861364|NZ_CP011958.1_3075612-3075557	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA|290aa|up_6|NZ_CP011958.1_1631073_1631943_-,NA|53aa|down_0|NZ_CP011958.1_1640176_1640335_-	NA|308aa|up_9|NZ_CP011958.1_1626139_1627063_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|203aa|up_8|NZ_CP011958.1_1627199_1627808_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|970aa|up_7|NZ_CP011958.1_1627916_1630826_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|290aa|up_6|NZ_CP011958.1_1631073_1631943_-	NA	NA|297aa|up_5|NZ_CP011958.1_1632063_1632954_-	cd00498, Hsp33, Heat shock protein 33 (Hsp33):  Cytosolic protein that acts as a molecular chaperone under oxidative conditions	NA|248aa|up_4|NZ_CP011958.1_1633028_1633772_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|349aa|up_3|NZ_CP011958.1_1633768_1634815_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|143aa|up_2|NZ_CP011958.1_1634774_1635203_+	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes	NA|459aa|up_1|NZ_CP011958.1_1636741_1638118_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|459aa|up_0|NZ_CP011958.1_1638260_1639637_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|53aa|down_0|NZ_CP011958.1_1640176_1640335_-	NA	NA|215aa|down_1|NZ_CP011958.1_1640363_1641008_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|535aa|down_2|NZ_CP011958.1_1641083_1642688_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|296aa|down_3|NZ_CP011958.1_1642820_1643708_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|344aa|down_4|NZ_CP011958.1_1644039_1645071_+	PRK08775, PRK08775, homoserine O-succinyltransferase	NA|406aa|down_5|NZ_CP011958.1_1645067_1646285_+	PRK08776, PRK08776, O-succinylhomoserine (thiol)-lyase	NA|461aa|down_6|NZ_CP011958.1_1648043_1649426_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|78aa|down_7|NZ_CP011958.1_1649513_1649747_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|130aa|down_8|NZ_CP011958.1_1649832_1650222_-	pfam05901, Excalibur, Excalibur calcium-binding domain	NA|190aa|down_9|NZ_CP011958.1_1650539_1651109_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]
GCF_001042815.1_ASM104281v1	NZ_CP011958	Xanthomonas oryzae pv. oryzicola strain CFBP7331, complete genome	3	2328335-2328499	3	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	TGCCGGAGCAGCAACCGGTGCCGG	24	0	0	NA	NA	NA	3	3	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA|122aa|up_2|NZ_CP011958.1_2325026_2325392_+,NA|341aa|down_9|NZ_CP011958.1_2345146_2346169_-	NA|323aa|up_9|NZ_CP011958.1_2297444_2298413_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|3195aa|up_8|NZ_CP011958.1_2299407_2308992_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|3883aa|up_7|NZ_CP011958.1_2308988_2320637_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|257aa|up_6|NZ_CP011958.1_2320846_2321617_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|431aa|up_5|NZ_CP011958.1_2321986_2323279_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|421aa|up_4|NZ_CP011958.1_2323262_2324525_-	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	NA|144aa|up_3|NZ_CP011958.1_2324536_2324968_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|122aa|up_2|NZ_CP011958.1_2325026_2325392_+	NA	NA|254aa|up_1|NZ_CP011958.1_2325491_2326253_+	PRK05320, PRK05320, rhodanese superfamily protein; Provisional	NA|216aa|up_0|NZ_CP011958.1_2326465_2327113_+	PRK09483, PRK09483, response regulator; Provisional	NA|329aa|down_0|NZ_CP011958.1_2331864_2332851_+	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|597aa|down_1|NZ_CP011958.1_2332883_2334674_-	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|141aa|down_2|NZ_CP011958.1_2335777_2336200_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|119aa|down_3|NZ_CP011958.1_2336196_2336553_-	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|200aa|down_4|NZ_CP011958.1_2336641_2337241_+	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	NA|606aa|down_5|NZ_CP011958.1_2337254_2339072_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|368aa|down_6|NZ_CP011958.1_2339275_2340378_+	pfam00665, rve, Integrase core domain	NA|341aa|down_7|NZ_CP011958.1_2340740_2341763_-	pfam07613, DUF1576, Protein of unknown function (DUF1576)	NA|459aa|down_8|NZ_CP011958.1_2343347_2344724_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|341aa|down_9|NZ_CP011958.1_2345146_2346169_-	NA
GCF_001042815.1_ASM104281v1	NZ_CP011958	Xanthomonas oryzae pv. oryzicola strain CFBP7331, complete genome	4	3273952-3274065	4	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	CGGTCTGGGGGTTTTTCAGGGGCGACTAAT	30	1	17	3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035|3273982-3274035	NZ_CP011958.1_41202-41149|NZ_CP011958.1_1638155-1638208|NZ_CP011958.1_1639758-1639811|NZ_CP011958.1_2344761-2344814|NZ_CP011958.1_2410598-2410651|NZ_CP011958.1_2447006-2447059|NZ_CP011958.1_2556859-2556806|NZ_CP011958.1_2605216-2605269|NZ_CP011958.1_2622528-2622581|NZ_CP011958.1_2755578-2755525|NZ_CP011958.1_2980967-2981020|NZ_CP011958.1_3034120-3034173|NZ_CP011958.1_3272379-3272432|NZ_CP011958.1_3654238-3654291|NZ_CP011958.1_4304574-4304627|NZ_CP011958.1_4820355-4820408|NZ_CP011958.1_4968325-4968378	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA,NA|278aa|down_1|NZ_CP011958.1_3274815_3275649_-	NA|498aa|up_9|NZ_CP011958.1_3256999_3258493_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_8|NZ_CP011958.1_3258489_3259422_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|943aa|up_7|NZ_CP011958.1_3259602_3262431_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|401aa|up_6|NZ_CP011958.1_3262473_3263676_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|479aa|up_5|NZ_CP011958.1_3263917_3265354_+	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|198aa|up_4|NZ_CP011958.1_3265559_3266153_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|198aa|up_3|NZ_CP011958.1_3266419_3267013_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|590aa|up_2|NZ_CP011958.1_3267009_3268779_+	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|300aa|up_1|NZ_CP011958.1_3269020_3269920_+	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|368aa|up_0|NZ_CP011958.1_3270529_3271632_+	pfam00665, rve, Integrase core domain	NA|164aa|down_0|NZ_CP011958.1_3274283_3274775_-	PHA02777, PHA02777, major capsid L1 protein; Provisional	NA|278aa|down_1|NZ_CP011958.1_3274815_3275649_-	NA	NA|323aa|down_2|NZ_CP011958.1_3275824_3276793_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|266aa|down_3|NZ_CP011958.1_3279355_3280154_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|374aa|down_4|NZ_CP011958.1_3280444_3281566_-	PRK08818, PRK08818, prephenate dehydrogenase; Provisional	NA|303aa|down_5|NZ_CP011958.1_3281562_3282471_-	cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP	NA|374aa|down_6|NZ_CP011958.1_3282999_3284121_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|642aa|down_7|NZ_CP011958.1_3284280_3286206_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|173aa|down_8|NZ_CP011958.1_3286347_3286866_-	PRK14147, PRK14147, heat shock protein GrpE; Provisional	NA|351aa|down_9|NZ_CP011958.1_3286966_3288019_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional
