assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	1	192663-192769	1	CRISPRCasFinder	no		RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Orphan	TTCGTTTCGCTTGCAAATTCAGAACC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|127aa|up_8|NZ_CP011939.1_182621_183002_+,NA|95aa|down_4|NZ_CP011939.1_201408_201693_-	NA|423aa|up_9|NZ_CP011939.1_181219_182488_-	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|127aa|up_8|NZ_CP011939.1_182621_183002_+	NA	NA|93aa|up_7|NZ_CP011939.1_183252_183531_-	pfam10942, DUF2619, Protein of unknown function (DUF2619)	NA|290aa|up_6|NZ_CP011939.1_185003_185873_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|490aa|up_5|NZ_CP011939.1_185872_187342_-	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|296aa|up_4|NZ_CP011939.1_187359_188247_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|360aa|up_3|NZ_CP011939.1_188237_189317_-	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	NA|583aa|up_2|NZ_CP011939.1_189648_191397_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|177aa|up_1|NZ_CP011939.1_191497_192028_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|85aa|up_0|NZ_CP011939.1_192182_192437_-	pfam14182, YgaB, YgaB-like protein	NA|250aa|down_0|NZ_CP011939.1_192909_193659_-	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL	NA|305aa|down_1|NZ_CP011939.1_193941_194856_-	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|1521aa|down_2|NZ_CP011939.1_194980_199543_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|486aa|down_3|NZ_CP011939.1_199821_201279_+	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|95aa|down_4|NZ_CP011939.1_201408_201693_-	NA	NA|454aa|down_5|NZ_CP011939.1_202560_203922_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|291aa|down_6|NZ_CP011939.1_203884_204757_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|53aa|down_7|NZ_CP011939.1_205087_205246_-	pfam08176, SspK, Small acid-soluble spore protein K family	NA|327aa|down_8|NZ_CP011939.1_205332_206313_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|373aa|down_9|NZ_CP011939.1_206491_207610_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	2	377226-380103	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACGCCCCCATGTAGGGAGCGAC,ATTTCAATCCACGCCCCCATGTAGGGAGCGAC,ATTTCAATCCACGCCCCCATGTAGGGAGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	43,42,42	43	TypeI-U,TypeI-U?,TypeI-C	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|203aa|up_7|NZ_CP011939.1_368160_368769_+,NA|141aa|up_6|NZ_CP011939.1_368793_369216_+,NA|294aa|up_5|NZ_CP011939.1_369231_370113_+,NA	NA|230aa|up_9|NZ_CP011939.1_364107_364797_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|512aa|up_8|NZ_CP011939.1_366338_367874_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|203aa|up_7|NZ_CP011939.1_368160_368769_+	NA	NA|141aa|up_6|NZ_CP011939.1_368793_369216_+	NA	NA|294aa|up_5|NZ_CP011939.1_369231_370113_+	NA	NA|305aa|up_4|NZ_CP011939.1_370135_371050_-	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|382aa|up_3|NZ_CP011939.1_371694_372840_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|434aa|up_2|NZ_CP011939.1_373216_374518_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|208aa|up_1|NZ_CP011939.1_375214_375838_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|140aa|up_0|NZ_CP011939.1_376608_377028_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas2|97aa|down_0|NZ_CP011939.1_380271_380562_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NZ_CP011939.1_380572_381604_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_2|NZ_CP011939.1_381600_382257_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|287aa|down_3|NZ_CP011939.1_382246_383107_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|627aa|down_4|NZ_CP011939.1_383128_385009_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|down_5|NZ_CP011939.1_385009_385729_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|809aa|down_6|NZ_CP011939.1_385926_388353_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|1080aa|down_7|NZ_CP011939.1_388825_392065_-	pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated	NA|196aa|down_8|NZ_CP011939.1_392214_392802_+	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|165aa|down_9|NZ_CP011939.1_393060_393555_+	pfam07681, DoxX, DoxX
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	3	419774-419874	3	CRISPRCasFinder	no		RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Orphan	GCTGTGTTGATAAAACCGGTTCACT	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|82aa|up_9|NZ_CP011939.1_409422_409668_+,NA|65aa|down_5|NZ_CP011939.1_427962_428157_-	NA|82aa|up_9|NZ_CP011939.1_409422_409668_+	NA	NA|146aa|up_8|NZ_CP011939.1_409959_410397_-	pfam17370, DUF5392, Family of unknown function (DUF5392)	NA|253aa|up_7|NZ_CP011939.1_410393_411152_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|453aa|up_6|NZ_CP011939.1_411439_412798_+	PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed	NA|126aa|up_5|NZ_CP011939.1_413290_413668_-	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|197aa|up_4|NZ_CP011939.1_413660_414251_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|331aa|up_3|NZ_CP011939.1_414263_415256_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|346aa|up_2|NZ_CP011939.1_415917_416955_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|248aa|up_1|NZ_CP011939.1_417360_418104_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|445aa|up_0|NZ_CP011939.1_418428_419763_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|319aa|down_0|NZ_CP011939.1_420372_421329_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|432aa|down_1|NZ_CP011939.1_421989_423285_+	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|724aa|down_2|NZ_CP011939.1_423534_425706_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|62aa|down_3|NZ_CP011939.1_426220_426406_-	PRK08061, rpsN, type Z 30S ribosomal protein S14	NA|188aa|down_4|NZ_CP011939.1_427228_427792_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|65aa|down_5|NZ_CP011939.1_427962_428157_-	NA	NA|149aa|down_6|NZ_CP011939.1_428522_428969_-	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|506aa|down_7|NZ_CP011939.1_429116_430634_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|260aa|down_8|NZ_CP011939.1_430638_431418_-	PRK07657, PRK07657, enoyl-CoA hydratase; Provisional	NA|303aa|down_9|NZ_CP011939.1_431548_432457_-	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	4	1065725-1065815	4	CRISPRCasFinder	no		RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Orphan	CCATATAATAAAAAAGCACTCGA	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|486aa|up_8|NZ_CP011939.1_1055962_1057420_-,NA	NA|460aa|up_9|NZ_CP011939.1_1052279_1053659_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|486aa|up_8|NZ_CP011939.1_1055962_1057420_-	NA	NA|105aa|up_7|NZ_CP011939.1_1057416_1057731_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|160aa|up_6|NZ_CP011939.1_1057746_1058226_-	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|421aa|up_5|NZ_CP011939.1_1058524_1059787_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|265aa|up_4|NZ_CP011939.1_1060003_1060798_-	COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	NA|261aa|up_3|NZ_CP011939.1_1060814_1061597_-	pfam09648, YycI, YycH protein	NA|428aa|up_2|NZ_CP011939.1_1061583_1062867_-	pfam07435, YycH, YycH protein	NA|607aa|up_1|NZ_CP011939.1_1062863_1064684_-	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|237aa|up_0|NZ_CP011939.1_1064688_1065399_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|430aa|down_0|NZ_CP011939.1_1066377_1067667_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|452aa|down_1|NZ_CP011939.1_1067841_1069197_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|148aa|down_2|NZ_CP011939.1_1069416_1069860_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|658aa|down_3|NZ_CP011939.1_1069856_1071830_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|314aa|down_4|NZ_CP011939.1_1071865_1072807_-	pfam09991, DUF2232, Predicted membrane protein (DUF2232)	NA|80aa|down_5|NZ_CP011939.1_1072964_1073204_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|165aa|down_6|NZ_CP011939.1_1073248_1073743_-	PRK06751, PRK06751, single-stranded DNA-binding protein; Provisional	NA|96aa|down_7|NZ_CP011939.1_1073804_1074092_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|157aa|down_8|NZ_CP011939.1_1074345_1074816_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|398aa|down_9|NZ_CP011939.1_1074828_1076022_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	5	1209553-1209643	5	CRISPRCasFinder	no		RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Orphan	CCCGTCTTTTGCTGGAACAAGCATA	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA,NA	NA|89aa|up_9|NZ_CP011939.1_1193608_1193875_+	TIGR02862, Sigma-K_factor-processing_regulatory_protein_BofA, pro-sigmaK processing inhibitor BofA	NA|86aa|up_8|NZ_CP011939.1_1199884_1200142_+	pfam13108, DUF3969, Protein of unknown function (DUF3969)	NA|154aa|up_7|NZ_CP011939.1_1200431_1200893_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|182aa|up_6|NZ_CP011939.1_1200912_1201458_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|356aa|up_5|NZ_CP011939.1_1201457_1202525_+	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|817aa|up_4|NZ_CP011939.1_1202541_1204992_+	CHL00095, clpC, Clp protease ATP binding subunit	NA|457aa|up_3|NZ_CP011939.1_1205224_1206595_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|362aa|up_2|NZ_CP011939.1_1206941_1208027_+	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|227aa|up_1|NZ_CP011939.1_1208093_1208774_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|159aa|up_0|NZ_CP011939.1_1208776_1209253_+	pfam02542, YgbB, YgbB family	NA|487aa|down_0|NZ_CP011939.1_1209805_1211266_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|223aa|down_1|NZ_CP011939.1_1211667_1212336_+	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|466aa|down_2|NZ_CP011939.1_1212316_1213714_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|138aa|down_3|NZ_CP011939.1_1213710_1214124_+	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|248aa|down_4|NZ_CP011939.1_1214123_1214867_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|170aa|down_5|NZ_CP011939.1_1214868_1215378_+	COG3688, COG3688, Predicted RNA-binding protein containing a PIN domain [General function prediction only]	NA|217aa|down_6|NZ_CP011939.1_1215444_1216095_+	PRK08295, PRK08295, RNA polymerase sporulation sigma factor SigH	NA|49aa|down_7|NZ_CP011939.1_1216403_1216550_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|62aa|down_8|NZ_CP011939.1_1216585_1216771_+	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|178aa|down_9|NZ_CP011939.1_1216920_1217454_+	PRK05609, nusG, transcription antitermination protein NusG; Validated
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	6	1450223-1450815	2	CRT	no		RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Orphan	TTCAAAAAGACAAAANGG	18	0	0	NA	NA	NA	11	11	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|71aa|up_3|NZ_CP011939.1_1446311_1446524_+,NA	NA|196aa|up_9|NZ_CP011939.1_1438609_1439197_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|240aa|up_8|NZ_CP011939.1_1439596_1440316_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|340aa|up_7|NZ_CP011939.1_1440512_1441532_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|415aa|up_6|NZ_CP011939.1_1441718_1442963_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|258aa|up_5|NZ_CP011939.1_1442940_1443714_+	PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional	NA|188aa|up_4|NZ_CP011939.1_1445482_1446046_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|71aa|up_3|NZ_CP011939.1_1446311_1446524_+	NA	NA|135aa|up_2|NZ_CP011939.1_1446772_1447177_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|353aa|up_1|NZ_CP011939.1_1447219_1448278_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|473aa|up_0|NZ_CP011939.1_1448661_1450080_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|468aa|down_0|NZ_CP011939.1_1451380_1452784_-	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein	NA|102aa|down_1|NZ_CP011939.1_1452953_1453259_+	TIGR04104, hypothetical_protein, cxxc_20_cxxc protein	NA|223aa|down_2|NZ_CP011939.1_1453837_1454506_+	TIGR00434, Phosphoadenosine_phosphosulfate_reductase, phosophoadenylyl-sulfate reductase (thioredoxin)	NA|253aa|down_3|NZ_CP011939.1_1454906_1455665_+	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|247aa|down_4|NZ_CP011939.1_1455671_1456412_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|209aa|down_5|NZ_CP011939.1_1456698_1457325_+	PRK06718, PRK06718, NAD(P)-binding protein	NA|177aa|down_6|NZ_CP011939.1_1457457_1457988_+	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|392aa|down_7|NZ_CP011939.1_1459344_1460520_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|368aa|down_8|NZ_CP011939.1_1461062_1462166_-	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|531aa|down_9|NZ_CP011939.1_1462398_1463991_+	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	7	1743995-1744086	6	CRISPRCasFinder	no	RT	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Unclear	TTCCTTTTCTGGTGTGGGCCGTT	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|98aa|up_4|NZ_CP011939.1_1738389_1738683_-,NA|55aa|down_3|NZ_CP011939.1_1748489_1748654_+	NA|218aa|up_9|NZ_CP011939.1_1733622_1734276_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|382aa|up_8|NZ_CP011939.1_1734287_1735433_-	TIGR01186, Choline_transport_ATP-binding_protein_OpuBA, glycine betaine/L-proline transport ATP binding subunit	NA|182aa|up_7|NZ_CP011939.1_1735617_1736163_+	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|187aa|up_6|NZ_CP011939.1_1736177_1736738_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|346aa|up_5|NZ_CP011939.1_1737000_1738038_-	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|98aa|up_4|NZ_CP011939.1_1738389_1738683_-	NA	NA|191aa|up_3|NZ_CP011939.1_1738833_1739406_-	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain	NA|272aa|up_2|NZ_CP011939.1_1739838_1740654_+	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|239aa|up_1|NZ_CP011939.1_1741277_1741994_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	RT|470aa|up_0|NZ_CP011939.1_1742434_1743844_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|493aa|down_0|NZ_CP011939.1_1744236_1745715_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|526aa|down_1|NZ_CP011939.1_1745865_1747443_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|325aa|down_2|NZ_CP011939.1_1747387_1748362_+	COG5464, COG5464, Uncharacterized conserved protein [Function unknown]	NA|55aa|down_3|NZ_CP011939.1_1748489_1748654_+	NA	NA|361aa|down_4|NZ_CP011939.1_1748857_1749940_-	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|460aa|down_5|NZ_CP011939.1_1750226_1751606_-	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|512aa|down_6|NZ_CP011939.1_1751595_1753131_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|445aa|down_7|NZ_CP011939.1_1753190_1754525_-	PRK05474, PRK05474, xylose isomerase; Provisional	NA|391aa|down_8|NZ_CP011939.1_1754733_1755906_+	pfam00480, ROK, ROK family	NA|366aa|down_9|NZ_CP011939.1_1756054_1757152_-	PRK09375, PRK09375, quinolinate synthase NadA
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	8	1838053-1838133	7	CRISPRCasFinder	no		RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Orphan	TGGCGTGCTTGCAAGTCCGGGTTT	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA,NA	NA|372aa|up_9|NZ_CP011939.1_1826055_1827171_+	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein	NA|392aa|up_8|NZ_CP011939.1_1827167_1828343_+	PRK08064, PRK08064, cystathionine beta-lyase MetC	NA|765aa|up_7|NZ_CP011939.1_1828582_1830877_-	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|276aa|up_6|NZ_CP011939.1_1831085_1831913_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|405aa|up_5|NZ_CP011939.1_1831925_1833140_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|415aa|up_4|NZ_CP011939.1_1833325_1834570_-	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold	NA|249aa|up_3|NZ_CP011939.1_1834685_1835432_+	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|242aa|up_2|NZ_CP011939.1_1835755_1836481_+	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|105aa|up_1|NZ_CP011939.1_1836657_1836972_+	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis	NA|329aa|up_0|NZ_CP011939.1_1836988_1837975_+	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases	NA|581aa|down_0|NZ_CP011939.1_1839196_1840939_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|165aa|down_1|NZ_CP011939.1_1841284_1841779_+	pfam17936, Big_6, Bacterial Ig domain	NA|162aa|down_2|NZ_CP011939.1_1842034_1842520_+	COG5652, COG5652, Predicted integral membrane protein [Function unknown]	NA|271aa|down_3|NZ_CP011939.1_1842587_1843400_+	PRK13546, PRK13546, teichoic acids export ABC transporter ATP-binding subunit TagH	NA|248aa|down_4|NZ_CP011939.1_1843609_1844353_+	cd05233, SDR_c, classical (c) SDRs	NA|95aa|down_5|NZ_CP011939.1_1844531_1844816_-	TIGR02901, cytochrome_aa3_quinol_oxidase_subunit_IV, cytochrome aa3 quinol oxidase, subunit IV	NA|203aa|down_6|NZ_CP011939.1_1844815_1845424_-	cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily	NA|650aa|down_7|NZ_CP011939.1_1845420_1847370_-	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|309aa|down_8|NZ_CP011939.1_1847394_1848321_-	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|220aa|down_9|NZ_CP011939.1_1848667_1849327_+	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	9	1916620-1916711	8	CRISPRCasFinder	no	DinG	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Type IV-A	GTTCTAGCCCTTGCAAAACCTTTGG	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|69aa|up_0|NZ_CP011939.1_1916263_1916470_+,NA|199aa|down_0|NZ_CP011939.1_1916866_1917463_-	NA|248aa|up_9|NZ_CP011939.1_1905134_1905878_+	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|194aa|up_8|NZ_CP011939.1_1906239_1906821_-	pfam02632, BioY, BioY family	NA|129aa|up_7|NZ_CP011939.1_1907886_1908273_+	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|508aa|up_6|NZ_CP011939.1_1908269_1909793_+	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|553aa|up_5|NZ_CP011939.1_1909776_1911435_+	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|300aa|up_4|NZ_CP011939.1_1911522_1912422_+	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|265aa|up_3|NZ_CP011939.1_1912868_1913663_-	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|443aa|up_2|NZ_CP011939.1_1913802_1915131_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|142aa|up_1|NZ_CP011939.1_1915637_1916063_-	pfam00582, Usp, Universal stress protein family	NA|69aa|up_0|NZ_CP011939.1_1916263_1916470_+	NA	NA|199aa|down_0|NZ_CP011939.1_1916866_1917463_-	NA	NA|384aa|down_1|NZ_CP011939.1_1917613_1918765_-	TIGR04478, radical_SAM_superfamily_domain_protein, radical SAM/CxCxxxxC motif protein YfkAB	NA|840aa|down_2|NZ_CP011939.1_1919065_1921585_-	sd00006, TPR, Tetratricopeptide repeat	NA|354aa|down_3|NZ_CP011939.1_1921809_1922871_+	cd05285, sorbitol_DH, Sorbitol dehydrogenase	NA|320aa|down_4|NZ_CP011939.1_1924899_1925859_+	cd06286, PBP1_CcpB-like, ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species	NA|181aa|down_5|NZ_CP011939.1_1925991_1926534_+	cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI)	NA|260aa|down_6|NZ_CP011939.1_1926562_1927342_+	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|62aa|down_7|NZ_CP011939.1_1927650_1927836_-	pfam13076, Fur_reg_FbpA, Fur-regulated basic protein A	NA|255aa|down_8|NZ_CP011939.1_1927878_1928643_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|320aa|down_9|NZ_CP011939.1_1930981_1931941_-	cd19103, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	10	2139269-2139361	9	CRISPRCasFinder	no		RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Orphan	ACACGGTGGTGAAACGCACAAGCA	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA,NA|31aa|down_3|NZ_CP011939.1_2141943_2142036_+	NA|378aa|up_9|NZ_CP011939.1_2128254_2129388_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|116aa|up_8|NZ_CP011939.1_2129581_2129929_+	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|289aa|up_7|NZ_CP011939.1_2130046_2130913_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|261aa|up_6|NZ_CP011939.1_2131055_2131838_+	PRK07659, PRK07659, enoyl-CoA hydratase; Provisional	NA|62aa|up_5|NZ_CP011939.1_2131842_2132028_+	pfam14120, YhzD, YhzD-like protein	NA|260aa|up_4|NZ_CP011939.1_2132088_2132868_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|298aa|up_3|NZ_CP011939.1_2133098_2133992_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|285aa|up_2|NZ_CP011939.1_2134004_2134859_+	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|424aa|up_1|NZ_CP011939.1_2134980_2136252_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|996aa|up_0|NZ_CP011939.1_2136248_2139236_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|315aa|down_0|NZ_CP011939.1_2139447_2140392_+	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional	NA|65aa|down_1|NZ_CP011939.1_2140528_2140723_+	pfam14147, Spore_YhaL, Sporulation protein YhaL	NA|291aa|down_2|NZ_CP011939.1_2140771_2141644_-	PRK03002, prsA, peptidylprolyl isomerase PrsA	NA|31aa|down_3|NZ_CP011939.1_2141943_2142036_+	NA	NA|110aa|down_4|NZ_CP011939.1_2142585_2142915_+	pfam08963, DUF1878, Protein of unknown function (DUF1878)	NA|189aa|down_5|NZ_CP011939.1_2142929_2143496_-	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr	NA|121aa|down_6|NZ_CP011939.1_2143640_2144003_-	COG4980, GvpP, Gas vesicle protein [General function prediction only]	NA|63aa|down_7|NZ_CP011939.1_2144471_2144660_+	PRK00068, PRK00068, hypothetical protein; Validated	NA|175aa|down_8|NZ_CP011939.1_2144703_2145228_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|138aa|down_9|NZ_CP011939.1_2145460_2145874_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	11	2945633-2945720	10	CRISPRCasFinder	no	DEDDh	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Unclear	CATTTTGAACAGATGGACTGCTCA	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|80aa|up_6|NZ_CP011939.1_2942731_2942971_-,NA|67aa|up_5|NZ_CP011939.1_2942988_2943189_-,NA|101aa|up_4|NZ_CP011939.1_2943194_2943497_-,NA|61aa|up_3|NZ_CP011939.1_2943511_2943694_-,NA|63aa|up_2|NZ_CP011939.1_2943962_2944151_-,NA|122aa|down_0|NZ_CP011939.1_2946051_2946417_-,NA|64aa|down_1|NZ_CP011939.1_2946580_2946772_-,NA|90aa|down_3|NZ_CP011939.1_2947152_2947422_-	NA|181aa|up_9|NZ_CP011939.1_2940885_2941428_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|152aa|up_8|NZ_CP011939.1_2941424_2941880_-	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family	NA|229aa|up_7|NZ_CP011939.1_2941982_2942669_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|80aa|up_6|NZ_CP011939.1_2942731_2942971_-	NA	NA|67aa|up_5|NZ_CP011939.1_2942988_2943189_-	NA	NA|101aa|up_4|NZ_CP011939.1_2943194_2943497_-	NA	NA|61aa|up_3|NZ_CP011939.1_2943511_2943694_-	NA	NA|63aa|up_2|NZ_CP011939.1_2943962_2944151_-	NA	NA|70aa|up_1|NZ_CP011939.1_2944283_2944493_-	pfam17356, PBSX_XtrA, Phage-like element PBSX protein XtrA	NA|131aa|up_0|NZ_CP011939.1_2944687_2945080_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|122aa|down_0|NZ_CP011939.1_2946051_2946417_-	NA	NA|64aa|down_1|NZ_CP011939.1_2946580_2946772_-	NA	NA|94aa|down_2|NZ_CP011939.1_2946858_2947140_-	pfam17448, yqaH, Uncharacterized protein YqaH	NA|90aa|down_3|NZ_CP011939.1_2947152_2947422_-	NA	NA|174aa|down_4|NZ_CP011939.1_2947446_2947968_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|76aa|down_5|NZ_CP011939.1_2948256_2948484_-	pfam01381, HTH_3, Helix-turn-helix	NA|140aa|down_6|NZ_CP011939.1_2948629_2949049_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|306aa|down_7|NZ_CP011939.1_2949177_2950095_+	cd17748, BRCT_DNA_ligase_like, BRCT domain of bacterial NAD-dependent DNA ligase (LigA) and similar proteins	DEDDh|321aa|down_8|NZ_CP011939.1_2950124_2951087_+	PRK06807, PRK06807, 3'-5' exonuclease	NA|667aa|down_9|NZ_CP011939.1_2951132_2953133_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_001039495.1_ASM103949v1	NZ_CP011939	Bacillus coagulans strain S-lac chromosome, complete genome	12	3554359-3554459	11	CRISPRCasFinder	no		RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	Orphan	GCGGGTGATGGGAATCGAACCCA	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,casR,DEDDh,csa3	NA|43aa|up_9|NZ_CP011939.1_3543375_3543504_+,NA	NA|43aa|up_9|NZ_CP011939.1_3543375_3543504_+	NA	NA|297aa|up_8|NZ_CP011939.1_3543623_3544514_+	cd01017, AdcA, Metal binding protein AdcA	NA|53aa|up_7|NZ_CP011939.1_3544575_3544734_+	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|368aa|up_6|NZ_CP011939.1_3545062_3546166_-	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|485aa|up_5|NZ_CP011939.1_3546162_3547617_-	PRK03640, PRK03640, o-succinylbenzoate--CoA ligase	NA|273aa|up_4|NZ_CP011939.1_3547934_3548753_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|268aa|up_3|NZ_CP011939.1_3548792_3549596_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|582aa|up_2|NZ_CP011939.1_3549592_3551338_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|444aa|up_1|NZ_CP011939.1_3551339_3552671_-	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|308aa|up_0|NZ_CP011939.1_3552936_3553860_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|230aa|down_0|NZ_CP011939.1_3561942_3562632_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|356aa|down_1|NZ_CP011939.1_3562771_3563839_-	pfam07854, DUF1646, Protein of unknown function (DUF1646)	NA|472aa|down_2|NZ_CP011939.1_3564324_3565740_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|805aa|down_3|NZ_CP011939.1_3568748_3571163_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|down_4|NZ_CP011939.1_3571256_3571463_-	TIGR00003, COP-associated_protein, copper ion binding protein	NA|108aa|down_5|NZ_CP011939.1_3571478_3571802_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|137aa|down_6|NZ_CP011939.1_3574471_3574882_-	smart00344, HTH_ASNC, helix_turn_helix ASNC type	NA|139aa|down_7|NZ_CP011939.1_3574988_3575405_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|396aa|down_8|NZ_CP011939.1_3575623_3576811_+	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|65aa|down_9|NZ_CP011939.1_3576870_3577065_+	pfam11755, DUF3311, Protein of unknown function (DUF3311)
