assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001029125.1_ASM102912v1	NZ_CP006636	Escherichia coli PCN061 chromosome, complete genome	1	917754-917958	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA,NA	NA|323aa|up_9|NZ_CP006636.1_903227_904196_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|551aa|up_8|NZ_CP006636.1_904207_905860_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_7|NZ_CP006636.1_906003_906903_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|553aa|up_6|NZ_CP006636.1_908476_910135_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP006636.1_910131_911088_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP006636.1_911238_912354_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP006636.1_912350_914297_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP006636.1_914369_914594_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP006636.1_914916_915237_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP006636.1_915267_917544_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP006636.1_918342_918561_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP006636.1_918845_919550_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP006636.1_919591_921313_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_3|NZ_CP006636.1_923203_924169_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_4|NZ_CP006636.1_924713_925208_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1330aa|down_5|NZ_CP006636.1_925342_929332_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_6|NZ_CP006636.1_929486_930098_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_7|NZ_CP006636.1_930108_931452_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_8|NZ_CP006636.1_931542_932835_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|815aa|down_9|NZ_CP006636.1_933073_935518_+	PRK14990, PRK14990, anaerobic dimethyl sulfoxide reductase subunit A; Provisional
GCF_001029125.1_ASM102912v1	NZ_CP006636	Escherichia coli PCN061 chromosome, complete genome	2	2329986-2330112	2	CRISPRCasFinder	no		DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA,NA	NA|395aa|up_9|NZ_CP006636.1_2308893_2310078_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP006636.1_2310151_2310928_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP006636.1_2310932_2312582_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP006636.1_2312582_2316977_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP006636.1_2317120_2317744_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP006636.1_2317740_2319429_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP006636.1_2319577_2322205_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP006636.1_2322351_2323074_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP006636.1_2323201_2326954_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP006636.1_2327649_2329935_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP006636.1_2330168_2331299_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP006636.1_2331298_2331553_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP006636.1_2331606_2332257_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP006636.1_2332719_2333796_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP006636.1_2333800_2335159_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP006636.1_2335431_2337060_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP006636.1_2337049_2338309_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP006636.1_2338305_2339496_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP006636.1_2339688_2340588_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP006636.1_2340600_2340786_+	PRK09956, PRK09956, ISNCY family transposase
GCF_001029125.1_ASM102912v1	NZ_CP006636	Escherichia coli PCN061 chromosome, complete genome	3	2823388-2823904	2,2,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,7,7	8	TypeI-E	DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA,NA	NA|254aa|up_9|NZ_CP006636.1_2815261_2816023_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP006636.1_2816003_2817053_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP006636.1_2817049_2817529_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP006636.1_2817528_2818239_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP006636.1_2818257_2818569_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP006636.1_2818762_2819086_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP006636.1_2819135_2819741_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP006636.1_2819740_2821168_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP006636.1_2821169_2822078_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP006636.1_2822329_2823367_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP006636.1_2824000_2824294_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP006636.1_2824290_2825214_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP006636.1_2825210_2825861_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP006636.1_2825842_2826589_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP006636.1_2826599_2827655_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP006636.1_2827666_2828203_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP006636.1_2828199_2829762_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP006636.1_2829859_2832559_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP006636.1_2834103_2834256_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP006636.1_2834520_2835255_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001029125.1_ASM102912v1	NZ_CP006636	Escherichia coli PCN061 chromosome, complete genome	4	2850955-2851045	4	CRISPRCasFinder	no		DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Orphan	GGTTTATCCCCGCTGGCGCGGGGAACACTC	30	0	0	NA	NA	I-E	1	1	Orphan	DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA,NA|47aa|down_1|NZ_CP006636.1_2852192_2852333_+	NA|424aa|up_9|NZ_CP006636.1_2839599_2840871_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP006636.1_2840861_2841122_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP006636.1_2841138_2841714_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NZ_CP006636.1_2841861_2842755_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP006636.1_2842718_2843498_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP006636.1_2843475_2844885_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP006636.1_2844906_2846361_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP006636.1_2846430_2847216_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP006636.1_2847533_2848811_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP006636.1_2848837_2850316_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP006636.1_2851382_2852054_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP006636.1_2852192_2852333_+	NA	NA|291aa|down_2|NZ_CP006636.1_2852346_2853219_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP006636.1_2853278_2854577_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP006636.1_2854664_2856302_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP006636.1_2856529_2857321_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP006636.1_2857391_2857727_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP006636.1_2857726_2857975_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP006636.1_2858052_2860287_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP006636.1_2860334_2861636_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
