assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001029105.3_ASM102910v3	NZ_CP011807	Pandoraea faecigallinarum strain DSM 23572 chromosome, complete genome	1	1466411-1466505	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	CATCACGCTGCTTGCCGTGCTGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA|116aa|down_8|NZ_CP011807.3_1478818_1479166_-	NA|285aa|up_9|NZ_CP011807.3_1453861_1454716_-	TIGR03464, HpnC, squalene synthase HpnC	NA|283aa|up_8|NZ_CP011807.3_1454942_1455791_+	TIGR03465, HpnD, squalene synthase HpnD	NA|415aa|up_7|NZ_CP011807.3_1455790_1457035_+	TIGR03467, HpnE, squalene-associated FAD-dependent desaturase	NA|658aa|up_6|NZ_CP011807.3_1457235_1459209_+	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	NA|232aa|up_5|NZ_CP011807.3_1459220_1459916_+	PRK07077, PRK07077, phosphorylase	NA|401aa|up_4|NZ_CP011807.3_1459961_1461164_-	TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB	NA|332aa|up_3|NZ_CP011807.3_1461160_1462156_-	TIGR03466, HpnA, hopanoid-associated sugar epimerase	NA|374aa|up_2|NZ_CP011807.3_1462156_1463278_-	TIGR03470, HpnH, hopanoid biosynthesis associated radical SAM protein HpnH	NA|320aa|up_1|NZ_CP011807.3_1463301_1464261_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|214aa|up_0|NZ_CP011807.3_1464616_1465258_-	pfam05494, MlaC, MlaC protein	NA|635aa|down_0|NZ_CP011807.3_1468313_1470218_-	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|358aa|down_1|NZ_CP011807.3_1470241_1471315_-	TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase	NA|396aa|down_2|NZ_CP011807.3_1471360_1472548_-	TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase	NA|571aa|down_3|NZ_CP011807.3_1472540_1474253_-	TIGR02320, Phosphoenolpyruvate_phosphomutase, phosphoenolpyruvate mutase	NA|255aa|down_4|NZ_CP011807.3_1474249_1475014_-	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline	NA|341aa|down_5|NZ_CP011807.3_1475029_1476052_-	TIGR03476, HpnL, putative membrane protein	NA|290aa|down_6|NZ_CP011807.3_1476052_1476922_-	PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional	NA|252aa|down_7|NZ_CP011807.3_1478005_1478761_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|116aa|down_8|NZ_CP011807.3_1478818_1479166_-	NA	NA|117aa|down_9|NZ_CP011807.3_1479354_1479705_-	cd06981, cupin_reut_a1446, Cupriavidus pinatubonensis reut_a1446 and related proteins, cupin domain
GCF_001029105.3_ASM102910v3	NZ_CP011807	Pandoraea faecigallinarum strain DSM 23572 chromosome, complete genome	2	3218027-3218121	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	CGACGGCTGTGGTGCAGGCGACG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA|54aa|up_4|NZ_CP011807.3_3213099_3213261_-,NA|286aa|down_6|NZ_CP011807.3_3226361_3227219_-	NA|397aa|up_9|NZ_CP011807.3_3204636_3205827_-	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|867aa|up_8|NZ_CP011807.3_3205838_3208439_-	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent	NA|384aa|up_7|NZ_CP011807.3_3208563_3209715_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|297aa|up_6|NZ_CP011807.3_3209741_3210632_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|670aa|up_5|NZ_CP011807.3_3211037_3213047_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|54aa|up_4|NZ_CP011807.3_3213099_3213261_-	NA	NA|268aa|up_3|NZ_CP011807.3_3213405_3214209_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|196aa|up_2|NZ_CP011807.3_3214630_3215218_-	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|316aa|up_1|NZ_CP011807.3_3215633_3216581_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|275aa|up_0|NZ_CP011807.3_3216862_3217687_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|319aa|down_0|NZ_CP011807.3_3218391_3219348_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|445aa|down_1|NZ_CP011807.3_3219673_3221008_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|260aa|down_2|NZ_CP011807.3_3221004_3221784_+	cd05233, SDR_c, classical (c) SDRs	NA|581aa|down_3|NZ_CP011807.3_3221821_3223564_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|297aa|down_4|NZ_CP011807.3_3223563_3224454_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|538aa|down_5|NZ_CP011807.3_3224562_3226176_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|286aa|down_6|NZ_CP011807.3_3226361_3227219_-	NA	NA|309aa|down_7|NZ_CP011807.3_3227522_3228449_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|785aa|down_8|NZ_CP011807.3_3228786_3231141_+	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|404aa|down_9|NZ_CP011807.3_3231204_3232416_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_001029105.3_ASM102910v3	NZ_CP011809	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence	1	37198-37328	1	CRISPRCasFinder	no			Orphan	CTCGTAGGCTTTTCGGGCCTGATCGGGCTGTTGCGCTTGCGTGTAGGATT	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA|99aa|up_7|NZ_CP011809.2_24884_25181_+,NA|656aa|up_5|NZ_CP011809.2_27521_29489_-,NA|148aa|up_2|NZ_CP011809.2_30974_31418_-,NA|751aa|up_0|NZ_CP011809.2_33754_36007_+,NA|97aa|down_1|NZ_CP011809.2_41419_41710_+,NA|90aa|down_4|NZ_CP011809.2_42981_43251_+,NA|323aa|down_5|NZ_CP011809.2_48465_49434_-	NA|247aa|up_9|NZ_CP011809.2_22384_23125_+	pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily	NA|301aa|up_8|NZ_CP011809.2_23204_24107_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|99aa|up_7|NZ_CP011809.2_24884_25181_+	NA	NA|266aa|up_6|NZ_CP011809.2_25484_26283_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|656aa|up_5|NZ_CP011809.2_27521_29489_-	NA	NA|88aa|up_4|NZ_CP011809.2_29844_30108_-	pfam10038, DUF2274, Protein of unknown function (DUF2274)	NA|266aa|up_3|NZ_CP011809.2_30167_30966_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|148aa|up_2|NZ_CP011809.2_30974_31418_-	NA	NA|246aa|up_1|NZ_CP011809.2_31499_32237_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|751aa|up_0|NZ_CP011809.2_33754_36007_+	NA	NA|246aa|down_0|NZ_CP011809.2_40410_41148_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|97aa|down_1|NZ_CP011809.2_41419_41710_+	NA	NA|95aa|down_2|NZ_CP011809.2_41706_41991_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|266aa|down_3|NZ_CP011809.2_42152_42951_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|90aa|down_4|NZ_CP011809.2_42981_43251_+	NA	NA|323aa|down_5|NZ_CP011809.2_48465_49434_-	NA	NA|266aa|down_6|NZ_CP011809.2_50669_51467_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|502aa|down_7|NZ_CP011809.2_51459_52965_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|627aa|down_8|NZ_CP011809.2_53936_55817_-	pfam13258, DUF4049, Domain of unknown function (DUF4049)	NA|345aa|down_9|NZ_CP011809.2_58150_59185_-	pfam13358, DDE_3, DDE superfamily endonuclease
