The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007687	Listeria monocytogenes strain L2625 chromosome, complete genome	2896586	118394	124919	2896586	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|118394_118847_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|118852_119188_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|119404_119833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014931069.1|119844_120261_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	7.7e-21
WP_009930418.1|120538_120928_+	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003721744.1|120940_121453_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003740132.1|121500_121803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072217178.1|121844_122249_+	phenylalanine racemase	NA	NA	NA	NA	NA
WP_031665466.1|122235_124104_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_009911828.1|124100_124919_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
NZ_CP007687	Listeria monocytogenes strain L2625 chromosome, complete genome	2896586	1094274	1101697	2896586		Hokovirus(33.33%)	8	NA	NA
WP_003721506.1|1094274_1094658_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_026749861.1|1094679_1095663_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_026749862.1|1095677_1096691_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|1096899_1098390_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_003727000.1|1098401_1099226_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_023549061.1|1099238_1099547_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003732712.1|1099607_1100012_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_020246560.1|1100140_1101697_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 3
NZ_CP007687	Listeria monocytogenes strain L2625 chromosome, complete genome	2896586	1190830	1296579	2896586	holin,integrase,tail,protease,terminase,tRNA,portal,capsid	Listeria_phage(70.59%)	118	1196218:1196235	1260750:1260767
WP_033920336.1|1190830_1193239_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_014600776.1|1193399_1194101_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	3.0e-33
WP_026749899.1|1194114_1197525_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
1196218:1196235	attL	AGCTTACTTGCTTTATTT	NA	NA	NA	NA
WP_003721623.1|1197622_1198075_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_033920334.1|1198090_1201291_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_003732773.1|1201397_1202072_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.7	7.5e-50
WP_072215733.1|1202108_1203035_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_003740576.1|1203188_1203452_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003723849.1|1203451_1203994_+	CvpA family protein	NA	NA	NA	NA	NA
WP_033920332.1|1204086_1205799_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.8	5.1e-18
WP_003732776.1|1205821_1208179_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
WP_008947590.1|1208259_1208571_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	38.6	1.2e-18
WP_033920329.1|1208646_1210458_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003732778.1|1210646_1211861_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003733801.1|1211916_1212411_-	YslB family protein	NA	NA	NA	NA	NA
WP_003723856.1|1212558_1213359_+	glutamate racemase	NA	NA	NA	NA	NA
WP_003732780.1|1213371_1214118_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_014600781.1|1214121_1214733_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_015454643.1|1214769_1215294_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_026749902.1|1215579_1216734_-|integrase	site-specific integrase	integrase	A8ATC7	Listeria_phage	97.1	4.1e-213
WP_012951517.1|1216877_1217534_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_026749903.1|1217585_1218038_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	96.0	8.5e-82
WP_026749904.1|1218054_1218378_-	helix-turn-helix transcriptional regulator	NA	A0A059T6G1	Listeria_phage	71.0	8.5e-36
WP_009929535.1|1219182_1219506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009929536.1|1219520_1219724_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	100.0	3.1e-28
WP_015987310.1|1219725_1219968_+	hypothetical protein	NA	A8ATD2	Listeria_phage	100.0	1.4e-43
WP_009929539.1|1219970_1220156_+	hypothetical protein	NA	A0A059T7Z3	Listeria_phage	96.7	1.7e-28
WP_009931096.1|1220390_1220543_+	hypothetical protein	NA	A0A059T7S2	Listeria_phage	98.0	3.4e-19
WP_026749905.1|1220679_1220934_+	hypothetical protein	NA	A0A059T6G3	Listeria_phage	91.5	4.3e-35
WP_031664911.1|1220951_1221929_+	DNA cytosine methyltransferase	NA	H7BVD3	unidentified_phage	37.5	9.2e-49
WP_031664910.1|1221925_1222519_+	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	61.7	3.1e-60
WP_031664908.1|1222521_1222965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014929526.1|1222961_1223108_+	hypothetical protein	NA	A8ATZ0	Listeria_phage	100.0	1.7e-20
WP_031664906.1|1223345_1223879_+	pentapeptide repeat-containing protein	NA	A0A060AFJ6	Listeria_phage	85.2	2.2e-44
WP_031664904.1|1223982_1224198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731703.1|1224194_1224371_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	87.9	1.9e-21
WP_014930899.1|1224760_1224988_+	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	84.0	4.6e-28
WP_031664899.1|1225304_1225520_+	hypothetical protein	NA	A0A059T7T1	Listeria_phage	93.7	2.8e-27
WP_031664897.1|1225569_1226130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009933642.1|1226233_1226407_+	hypothetical protein	NA	A0A059T5G3	Listeria_phage	100.0	5.2e-24
WP_014929534.1|1226403_1226787_+	hypothetical protein	NA	A0A059T6A2	Listeria_phage	99.2	5.5e-66
WP_033920325.1|1226788_1227268_+	siphovirus Gp157 family protein	NA	A0A059T803	Listeria_phage	98.7	1.2e-78
WP_003743935.1|1227280_1227970_+	AAA family ATPase	NA	A0A059T7T3	Listeria_phage	100.0	2.6e-130
WP_026749915.1|1228033_1229290_+	DEAD/DEAH box helicase	NA	Q8W5V9	Listeria_phage	90.0	5.4e-219
WP_026749916.1|1229313_1229811_+	DUF669 domain-containing protein	NA	A0A059T5G4	Listeria_phage	57.3	3.2e-50
WP_026749917.1|1229830_1232104_+	DNA primase	NA	R4IBW2	Listeria_phage	74.3	0.0e+00
WP_031664889.1|1232244_1232565_+	VRR-NUC domain-containing protein	NA	Q8W5V6	Listeria_phage	97.2	1.2e-53
WP_033920321.1|1232561_1232831_+	hypothetical protein	NA	W0GBM0	Listeria_phage	72.2	3.1e-15
WP_031664887.1|1232941_1233472_+	DUF3310 domain-containing protein	NA	A0A059T7T5	Listeria_phage	77.3	1.3e-73
WP_031664885.1|1233472_1233898_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	99.3	1.8e-73
WP_031664882.1|1234124_1235066_+	DUF4868 domain-containing protein	NA	A0A1Q1PW39	Staphylococcus_phage	33.0	5.9e-45
WP_031664880.1|1235091_1235703_+	hypothetical protein	NA	A0A1Q1PW40	Staphylococcus_phage	42.8	6.0e-22
WP_031664879.1|1235732_1236059_+	hypothetical protein	NA	A0A059T5G5	Listeria_phage	93.5	9.5e-51
WP_031664877.1|1236058_1236373_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	97.1	3.2e-56
WP_012951543.1|1236421_1236778_+|terminase	P27 family phage terminase small subunit	terminase	A0A059T7Y1	Listeria_phage	98.0	2.0e-46
WP_026749921.1|1236774_1238418_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	99.6	0.0e+00
WP_009917707.1|1238427_1238817_-	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	39.8	3.7e-17
WP_026749922.1|1238867_1239998_+|portal	phage portal protein	portal	A0A059T6F0	Listeria_phage	99.2	6.1e-214
WP_026749923.1|1239994_1240792_+|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	99.6	6.2e-144
WP_014930913.1|1240818_1241970_+|capsid	phage major capsid protein	capsid	A0A059T678	Listeria_phage	100.0	6.3e-214
WP_167620291.1|1241976_1242147_+	hypothetical protein	NA	A0A059T7Y2	Listeria_phage	98.2	2.4e-21
WP_014930914.1|1242156_1242456_+	hypothetical protein	NA	A0A059T7R0	Listeria_phage	100.0	5.3e-48
WP_025370587.1|1242439_1242805_+	hypothetical protein	NA	A0A059T6F2	Listeria_phage	99.2	2.4e-63
WP_026747164.1|1242801_1243203_+	hypothetical protein	NA	A8ATA2	Listeria_phage	97.0	5.2e-67
WP_026749924.1|1243199_1243583_+	hypothetical protein	NA	A0A059T681	Listeria_phage	96.9	2.1e-65
WP_025370590.1|1243603_1244191_+|tail	phage tail protein	tail	A0A059T7Y4	Listeria_phage	99.0	1.3e-106
WP_025370591.1|1244261_1244594_+	hypothetical protein	NA	A0A059T7R2	Listeria_phage	97.3	8.7e-52
WP_009931626.1|1244644_1244806_+	hypothetical protein	NA	A0A059T6F4	Listeria_phage	98.0	4.3e-20
WP_026749925.1|1244809_1249720_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	96.0	0.0e+00
WP_026749926.1|1249716_1251366_+|tail	phage tail family protein	tail	A0A059T682	Listeria_phage	99.3	0.0e+00
WP_026749927.1|1251378_1253673_+|tail	phage tail protein	tail	A0A059T7Y6	Listeria_phage	99.2	0.0e+00
WP_026749928.1|1253662_1254757_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	84.9	1.9e-175
WP_003733957.1|1254807_1255113_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_014929558.1|1255112_1255394_+|holin	phage holin	holin	A8ATW3	Listeria_phage	98.9	6.7e-45
WP_077914485.1|1255390_1256245_+	N-acetylmuramoyl-L-alanine amidase	NA	P89923	Bacillus_phage	50.6	8.1e-33
WP_026749929.1|1256849_1257359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026749930.1|1257754_1257940_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	89.7	5.4e-19
WP_031664868.1|1258380_1258614_+	hypothetical protein	NA	A8ATC5	Listeria_phage	89.6	1.1e-32
WP_003729706.1|1260661_1261255_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
1260750:1260767	attR	AAATAAAGCAAGTAAGCT	NA	NA	NA	NA
WP_012581425.1|1261391_1261799_-	VOC family protein	NA	NA	NA	NA	NA
WP_009924169.1|1261963_1262563_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	5.8e-30
WP_003723543.1|1262594_1262855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989717.1|1262978_1264391_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
WP_003723545.1|1264415_1264679_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_003723546.1|1264846_1265323_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003723547.1|1265360_1265606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033920317.1|1265602_1266808_-	MFS transporter	NA	NA	NA	NA	NA
WP_003723549.1|1267012_1267672_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723550.1|1267713_1267908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723551.1|1267974_1268823_-	YitT family protein	NA	NA	NA	NA	NA
WP_003723553.1|1269153_1269291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009931701.1|1269441_1270155_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_033920315.1|1270185_1271832_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_023552381.1|1271850_1273335_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_014601949.1|1273451_1273913_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003726717.1|1273951_1274416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014601950.1|1274604_1275519_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014601951.1|1275543_1276791_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	52.0	4.2e-107
WP_014601952.1|1276774_1277605_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.0	1.1e-45
WP_031671806.1|1277752_1278892_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1278972_1279368_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1279518_1279734_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1279852_1280386_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1280403_1281069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1281330_1282269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1282383_1283667_+	trigger factor	NA	NA	NA	NA	NA
WP_033920310.1|1283852_1285112_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.4	6.1e-146
WP_003723887.1|1285230_1285797_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_009924619.1|1285831_1286401_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1286502_1287045_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1287054_1287918_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1287914_1288700_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723892.1|1288833_1289694_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_009924617.1|1289965_1292044_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
WP_033920307.1|1292106_1293411_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|1293693_1294596_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_003724001.1|1294616_1295156_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_031645070.1|1295169_1296579_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	1.7e-43
>prophage 4
NZ_CP007687	Listeria monocytogenes strain L2625 chromosome, complete genome	2896586	1828213	1836499	2896586		Synechococcus_phage(33.33%)	8	NA	NA
WP_033921148.1|1828213_1828780_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_031665593.1|1828776_1829826_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	9.2e-63
WP_003722245.1|1829844_1831272_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_033921146.1|1831256_1833476_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	1.3e-159
WP_033921144.1|1833468_1834152_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1834155_1834401_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_010989809.1|1834412_1835126_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.3e-41
WP_003729814.1|1835206_1836499_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 5
NZ_CP007687	Listeria monocytogenes strain L2625 chromosome, complete genome	2896586	2495373	2503217	2896586		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2495373_2496345_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2496352_2497321_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_010990001.1|2497322_2498198_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
WP_012952017.1|2498305_2500036_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	3.0e-175
WP_077421975.1|2500077_2501139_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_014601137.1|2501155_2502139_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	37.2	1.6e-48
WP_003722610.1|2502257_2503217_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
