The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011526	Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome	2755072	718083	725903	2755072		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|718083_719139_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|719138_719825_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|719799_720273_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|720614_721055_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|721334_721919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|722017_722731_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|722734_723154_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|723155_723824_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|724174_724768_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|724751_725903_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP011526	Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome	2755072	737875	752606	2755072		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_001836199.1|737875_738934_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.8e-21
WP_000197271.1|739284_739827_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|740450_741368_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|741458_741560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|741637_743143_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|743483_743984_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|744003_744870_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|745670_746069_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|746031_748137_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|748254_749226_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|749739_749895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|749933_750905_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245578.1|750891_751848_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|751844_752606_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP011526	Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome	2755072	837854	884787	2755072	integrase,capsid,plate,tail,head,terminase,holin,portal	Staphylococcus_phage(94.44%)	74	835951:835967	870698:870714
835951:835967	attL	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_001006454.1|837854_839105_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
WP_001010508.1|839094_839559_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|839709_841107_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145725.1|841174_842224_-|integrase	site-specific integrase	integrase	A0A0F6N3M4	Staphylococcus_phage	100.0	9.1e-204
WP_000143212.1|842335_842536_+	excisionase	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
WP_000391592.1|842472_843378_-	hypothetical protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
WP_000661437.1|843409_844135_-	PH domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000775187.1|844162_844837_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|844853_845186_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|845448_845643_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001002757.1|845642_846410_+	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000187184.1|846410_846635_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001836220.1|846674_847124_+	hypothetical protein	NA	A0A0F6N3I1	Staphylococcus_phage	100.0	3.0e-79
WP_000977381.1|847137_847359_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_000066011.1|847351_847513_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000165363.1|847606_847909_+	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_001836221.1|847913_848174_+	DUF1108 family protein	NA	A0A0F6N3P1	Staphylococcus_phage	100.0	1.2e-43
WP_001004336.1|848186_848723_+	host-nuclease inhibitor Gam family protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_000840496.1|848723_849374_+	ERF family protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001099009.1|849370_849814_+	single-stranded DNA-binding protein	NA	A0A2I6PD99	Staphylococcus_phage	100.0	1.8e-76
WP_000057263.1|849825_850500_+	hypothetical protein	NA	A1KX69	Staphylococcus_virus	100.0	3.9e-131
WP_001081076.1|850496_850646_+	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_000414755.1|850638_850920_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001836222.1|850985_851756_+	phage protein	NA	G4KNP0	Staphylococcus_phage	99.6	9.3e-121
WP_000803062.1|851765_852545_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256589.1|852538_852697_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_001123695.1|852709_852931_+	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_001836225.1|852940_853345_+	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	99.3	3.6e-68
WP_001187243.1|853349_853535_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|853535_853841_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_000029376.1|853968_854325_+	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_001562543.1|854328_854571_+	phage protein	NA	A0A0F6N3E1	Staphylococcus_phage	100.0	6.6e-41
WP_001557190.1|854579_854951_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.6e-54
WP_001836226.1|854943_855195_+	DUF1024 family protein	NA	A0A1W6JPK6	Staphylococcus_phage	98.8	2.1e-37
WP_000028421.1|855184_855367_+	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	98.3	1.0e-25
WP_000185651.1|855359_855890_+	dUTP pyrophosphatase	NA	A0A0F6N3L0	Staphylococcus_phage	100.0	1.7e-94
WP_000195785.1|855926_856133_+	DUF1381 domain-containing protein	NA	A0A0F6N4I4	Staphylococcus_phage	100.0	1.1e-20
WP_000132920.1|856129_856324_+	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
WP_001072794.1|856320_856524_+	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_001657250.1|856516_856690_+	transcriptional activator RinB	NA	A0A0F6N3E7	Staphylococcus_phage	100.0	2.2e-22
WP_000990005.1|856690_856837_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000162701.1|856860_857283_+	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_001038244.1|857470_857965_+|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
WP_001836232.1|857967_859263_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	99.8	2.0e-256
WP_000909970.1|859273_860812_+|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	100.0	2.4e-293
WP_001133044.1|860818_861814_+|capsid	minor capsid protein	capsid	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000072208.1|861886_862057_+	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_000392146.1|862165_862786_+	DUF4355 domain-containing protein	NA	A0A0F6N3K8	Staphylococcus_phage	100.0	2.1e-70
WP_001836233.1|862799_863774_+|capsid	phage major capsid protein	capsid	A0A0F6N3L5	Staphylococcus_phage	100.0	3.7e-183
WP_001836234.1|863795_864083_+	hypothetical protein	NA	A0A0F6N4J3	Staphylococcus_phage	100.0	1.6e-46
WP_000208960.1|864091_864424_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_025175363.1|864420_864723_+	hypothetical protein	NA	B2ZYY8	Staphylococcus_phage	98.0	7.4e-50
WP_001017815.1|864722_865070_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188649.1|865081_865465_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_000002577.1|865483_866065_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100161.1|866126_866492_+|tail	tail assembly chaperone	tail	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|866521_866866_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141480.1|866882_870350_+	hypothetical protein	NA	A0A0F6N3F9	Staphylococcus_phage	100.0	4.2e-245
WP_000350675.1|870362_871310_+|tail	phage tail family protein	tail	A0A0F6N3L4	Staphylococcus_phage	100.0	2.8e-183
870698:870714	attR	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_000152718.1|871318_873217_+|tail	phage tail protein	tail	A0A0F6N3M1	Staphylococcus_phage	100.0	0.0e+00
WP_001836235.1|873231_875142_+	hypothetical protein	NA	A0A0F6N4K2	Staphylococcus_phage	100.0	0.0e+00
WP_000634521.1|875141_876965_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	100.0	0.0e+00
WP_000705896.1|876964_877342_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000782200.1|877345_877519_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466777.1|877558_877858_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_001836236.1|877994_879893_+	glucosaminidase domain-containing protein	NA	A0A0F6N4K6	Staphylococcus_phage	100.0	0.0e+00
WP_000276662.1|879905_881144_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	100.0	1.6e-210
WP_000398872.1|881149_881545_+	hypothetical protein	NA	A0A0F6N3G8	Staphylococcus_phage	100.0	1.2e-68
WP_000351119.1|881600_881876_+|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_001141517.1|881862_883275_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_001035620.1|883334_883892_-	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001788502.1|884266_884419_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|884489_884600_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|884601_884787_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
>prophage 4
NZ_CP011526	Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome	2755072	967676	1021462	2755072	protease,tRNA,bacteriocin	Streptococcus_phage(33.33%)	53	NA	NA
WP_000448934.1|967676_968666_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|968960_969356_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|969726_970446_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959287.1|970566_971553_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082731.1|971600_973409_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_002871029.1|973868_974675_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214065.1|974697_975063_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|975166_975760_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|975945_976293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|976309_976945_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|976961_977771_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|977767_978622_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|978642_980028_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|980037_981882_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|982159_982930_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|983124_984210_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570692.1|984551_986120_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|986261_987020_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|987213_987723_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154222.1|987835_989026_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|989003_990179_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_002871035.1|990611_992093_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|992076_992337_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049959.1|992336_993899_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|994200_995004_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001805132.1|995222_997547_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.1	8.1e-11
WP_000021864.1|997563_998922_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|999060_1000572_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1001058_1001628_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1001837_1002056_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1002136_1003123_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1003321_1003498_+	YkvS family protein	NA	NA	NA	NA	NA
WP_002871039.1|1003512_1004115_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1005031_1005133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1005142_1005415_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1005458_1007423_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1007425_1007746_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|1007742_1008384_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795544.1|1008471_1008762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410720.1|1009040_1009328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719184.1|1009333_1010815_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1010903_1011260_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1011747_1012707_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1012752_1012884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1012947_1013163_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620953.1|1013327_1013879_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1013929_1014868_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190623.1|1015049_1016411_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526687.1|1016397_1018071_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150195.1|1018057_1018861_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1018853_1019675_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|1019913_1020243_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088780.1|1020280_1021462_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 5
NZ_CP011526	Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome	2755072	1041449	1049922	2755072		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1041449_1041932_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_002871056.1|1041918_1043043_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1043046_1043751_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1043750_1044014_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1044015_1044687_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1044679_1046869_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1046847_1048332_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1048324_1049353_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1049355_1049922_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NZ_CP011526	Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome	2755072	1588627	1596939	2755072	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1588627_1589413_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1589538_1590429_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1590438_1591785_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1591898_1592999_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1593001_1593679_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1593809_1594916_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1595139_1596939_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NZ_CP011526	Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome	2755072	1666077	1675120	2755072	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1666077_1666596_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1666617_1668891_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1669093_1671373_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1671647_1671908_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1671926_1673066_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1673088_1674114_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1674115_1675120_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP011526	Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome	2755072	1807606	1881858	2755072	protease,tRNA,transposase	Staphylococcus_phage(93.22%)	75	NA	NA
WP_001549041.1|1807606_1810024_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1810311_1811493_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1811602_1812556_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1812552_1813116_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1813235_1813637_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1815215_1816043_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1816045_1816165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1816276_1817278_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1817399_1817864_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1817876_1819058_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1819068_1819701_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1819707_1820751_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261681.1|1821231_1822734_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1823256_1823571_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989123.1|1823570_1824863_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
WP_000163235.1|1824880_1825276_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1825570_1826425_-	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1826700_1826925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671063.1|1827123_1827594_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	3.3e-81
WP_001153742.1|1827706_1828150_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1828136_1828580_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1828875_1829511_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1829950_1830664_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1830923_1831226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1831481_1831847_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1831843_1832197_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1834280_1835114_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1835325_1836234_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1836358_1837552_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1837922_1839515_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1839650_1840136_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1840510_1841257_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1841261_1841735_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1841800_1842058_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1842054_1843056_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1843060_1844539_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1844697_1845153_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1845455_1846106_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1846186_1847182_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1847257_1847884_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1847924_1848269_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1848366_1848918_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1849135_1849777_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1849890_1850076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1850077_1850254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070812.1|1850264_1850648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1851251_1851395_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1851597_1851693_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1851815_1851917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1852264_1852642_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1853161_1857274_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072624.1|1858123_1859323_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	100.0	8.5e-230
WP_000028669.1|1859315_1860872_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1861035_1861170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1861234_1861954_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1862104_1862821_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1862922_1863030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1862978_1863698_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001836279.1|1863818_1864538_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	2.1e-130
WP_001039447.1|1864595_1865318_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001836281.1|1865442_1866150_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	1.7e-129
WP_001092763.1|1867113_1867680_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1868153_1868852_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1868848_1869610_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1869606_1870299_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1870321_1871695_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1871704_1872223_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1872238_1873483_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1873475_1876469_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1876533_1876677_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1877413_1877557_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1877798_1878782_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000878802.1|1878783_1879704_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	2.3e-174
WP_001790220.1|1880517_1881057_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1881069_1881858_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 1
NZ_CP011527	Staphylococcus aureus subsp. aureus DSM 20231 plasmid unnamed, complete sequence	27490	18549	27461	27490	transposase	Staphylococcus_phage(57.14%)	10	NA	NA
WP_000277738.1|18549_20196_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_000378396.1|20558_22739_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000159128.1|22731_23097_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|23334_23712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|23807_24482_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|24516_24729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000633163.1|25048_25384_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000120605.1|25444_25759_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_001834181.1|25755_27048_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.4	3.0e-188
WP_000358995.1|27065_27461_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
