assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001027085.1_ASM102708v1	NZ_CP007688	Listeria monocytogenes strain L1846 chromosome, complete genome	1	204731-204882	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Unclear	CCGCCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA,NA	NA|231aa|up_9|NZ_CP007688.1_191977_192670_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP007688.1_192666_193875_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP007688.1_194559_194868_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP007688.1_194987_195296_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP007688.1_195682_197056_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP007688.1_197106_198063_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP007688.1_198105_198819_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP007688.1_199089_200043_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP007688.1_200284_201874_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP007688.1_202204_203737_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP007688.1_205891_206761_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP007688.1_206832_207156_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP007688.1_207290_207752_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP007688.1_207802_208135_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP007688.1_208201_208876_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP007688.1_208952_209894_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP007688.1_210187_210811_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP007688.1_210900_211485_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP007688.1_211591_212152_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP007688.1_212266_215806_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_001027085.1_ASM102708v1	NZ_CP007688	Listeria monocytogenes strain L1846 chromosome, complete genome	2	524159-524767	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	3	4	524575-524609|524575-524609|524639-524674|524704-524738	NZ_CP007688.1_1268388-1268422|NZ_CP007688.1_2363854-2363820|NZ_CP007688.1_1249289-1249324|NZ_CP007688.1_2369846-2369880	I-A:I-A:I-A	9,9,9	9	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA|133aa|up_5|NZ_CP007688.1_519147_519546_+,NA|193aa|down_0|NZ_CP007688.1_525158_525737_+	NA|217aa|up_9|NZ_CP007688.1_515210_515861_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP007688.1_515969_518030_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP007688.1_518033_518636_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP007688.1_518663_519131_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP007688.1_519147_519546_+	NA	NA|217aa|up_4|NZ_CP007688.1_519556_520207_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP007688.1_520203_521250_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP007688.1_521265_521559_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP007688.1_521573_522845_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP007688.1_522984_523920_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP007688.1_525158_525737_+	NA	NA|227aa|down_1|NZ_CP007688.1_525844_526525_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP007688.1_526549_526909_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP007688.1_526915_527374_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP007688.1_527755_529591_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP007688.1_529691_530123_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP007688.1_530169_531600_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP007688.1_531720_532536_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP007688.1_532816_533185_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP007688.1_533331_534747_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_001027085.1_ASM102708v1	NZ_CP007688	Listeria monocytogenes strain L1846 chromosome, complete genome	3	2682283-2684366	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Type II-A,Type II-B,Type II-C	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,37	10	10	2682319-2682348|2682649-2682678|2684103-2684132|2684169-2684198|2684235-2684264|2684301-2684330|2684103-2684131|2684169-2684197|2684235-2684263|2684301-2684329	NZ_CP007688.1_2387608-2387579|NZ_CP007688.1_1258395-1258366|NZ_CP007688.1_1254056-1254085|NZ_CP007688.1_1253358-1253329|NZ_CP007688.1_2388445-2388474|NZ_CP007688.1_2380645-2380616|NZ_CP007688.1_1254056-1254084|NZ_CP007688.1_1253358-1253330|NZ_CP007688.1_2388445-2388473|NZ_CP007688.1_2380645-2380617	II-A,II-B:II-A,II-B:II-A,II-B	31,31,4	31	TypeII-A,TypeII-B,TypeII-C	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA|120aa|up_0|NZ_CP007688.1_2681375_2681735_-,NA|160aa|down_4|NZ_CP007688.1_2690865_2691345_-	NA|159aa|up_9|NZ_CP007688.1_2663980_2664457_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NZ_CP007688.1_2664456_2667444_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NZ_CP007688.1_2667942_2668785_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NZ_CP007688.1_2668832_2670314_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NZ_CP007688.1_2670414_2671302_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NZ_CP007688.1_2677093_2678122_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP007688.1_2678390_2679917_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP007688.1_2679958_2680810_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP007688.1_2680831_2681254_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|120aa|up_0|NZ_CP007688.1_2681375_2681735_-	NA	csn2|221aa|down_0|NZ_CP007688.1_2684494_2685157_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP007688.1_2685146_2685488_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP007688.1_2685484_2686351_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP007688.1_2686351_2690356_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP007688.1_2690865_2691345_-	NA	NA|131aa|down_5|NZ_CP007688.1_2691569_2691962_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP007688.1_2691983_2692421_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP007688.1_2692615_2693362_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP007688.1_2693367_2694165_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP007688.1_2694167_2695034_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCF_001027085.1_ASM102708v1	NZ_CP007688	Listeria monocytogenes strain L1846 chromosome, complete genome	4	2787014-2787124	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA,NA|74aa|down_2|NZ_CP007688.1_2787893_2788115_-,NA|52aa|down_4|NZ_CP007688.1_2790056_2790212_+,NA|214aa|down_5|NZ_CP007688.1_2790244_2790886_-	NA|330aa|up_9|NZ_CP007688.1_2778939_2779929_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP007688.1_2779950_2780547_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP007688.1_2780550_2780925_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP007688.1_2781030_2781882_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP007688.1_2782000_2782840_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP007688.1_2782960_2783803_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP007688.1_2783848_2784094_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP007688.1_2784108_2784705_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP007688.1_2784813_2785131_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP007688.1_2785160_2786900_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP007688.1_2787226_2787691_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP007688.1_2787708_2787891_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP007688.1_2787893_2788115_-	NA	NA|455aa|down_3|NZ_CP007688.1_2788249_2789614_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP007688.1_2790056_2790212_+	NA	NA|214aa|down_5|NZ_CP007688.1_2790244_2790886_-	NA	NA|505aa|down_6|NZ_CP007688.1_2791583_2793098_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP007688.1_2793212_2794151_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP007688.1_2794193_2795141_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP007688.1_2795281_2797021_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
