assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001025175.1_ASM102517v1	NZ_AP012324	Bifidobacterium breve DSM 20213 = JCM 1192	1	1342450-1342563	1,1	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	CAGCCCTGCGAGATTTGCAGTGCTGGG,CAGCCCTGCGAGATTTGCAGTGCTGGG	27,27	0	0	NA	NA	NA:NA	2,1	2	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA|78aa|up_7|NZ_AP012324.1_1332173_1332407_-,NA|91aa|up_3|NZ_AP012324.1_1340085_1340358_-,NA|166aa|up_1|NZ_AP012324.1_1341141_1341639_-,NA|85aa|up_0|NZ_AP012324.1_1341635_1341890_-,NA|52aa|down_0|NZ_AP012324.1_1343012_1343168_-,NA|238aa|down_1|NZ_AP012324.1_1343527_1344241_-,NA|123aa|down_2|NZ_AP012324.1_1344237_1344606_-	NA|117aa|up_9|NZ_AP012324.1_1330931_1331282_-	pfam12666, PrgI, PrgI family protein	NA|282aa|up_8|NZ_AP012324.1_1331313_1332159_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|78aa|up_7|NZ_AP012324.1_1332173_1332407_-	NA	NA|1790aa|up_6|NZ_AP012324.1_1332770_1338140_-	pfam16364, Antigen_C, Cell surface antigen C-terminus	NA|330aa|up_5|NZ_AP012324.1_1338491_1339481_-	pfam07554, FIVAR, FIVAR domain	NA|158aa|up_4|NZ_AP012324.1_1339584_1340058_-	pfam02467, Whib, Transcription factor WhiB	NA|91aa|up_3|NZ_AP012324.1_1340085_1340358_-	NA	NA|222aa|up_2|NZ_AP012324.1_1340363_1341029_-	cd02042, ParAB_family, partition proteins ParAB family	NA|166aa|up_1|NZ_AP012324.1_1341141_1341639_-	NA	NA|85aa|up_0|NZ_AP012324.1_1341635_1341890_-	NA	NA|52aa|down_0|NZ_AP012324.1_1343012_1343168_-	NA	NA|238aa|down_1|NZ_AP012324.1_1343527_1344241_-	NA	NA|123aa|down_2|NZ_AP012324.1_1344237_1344606_-	NA	NA|89aa|down_3|NZ_AP012324.1_1344605_1344872_-	pfam08667, BetR, BetR domain	NA|178aa|down_4|NZ_AP012324.1_1345483_1346017_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|775aa|down_5|NZ_AP012324.1_1346117_1348442_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|159aa|down_6|NZ_AP012324.1_1348535_1349012_-	PRK00601, dut, dUTP diphosphatase	NA|98aa|down_7|NZ_AP012324.1_1349011_1349305_-	pfam13834, DUF4193, Domain of unknown function (DUF4193)	NA|358aa|down_8|NZ_AP012324.1_1349456_1350530_+	pfam11268, DUF3071, Protein of unknown function (DUF3071)	NA|421aa|down_9|NZ_AP012324.1_1350635_1351898_-	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase
GCF_001025175.1_ASM102517v1	NZ_AP012324	Bifidobacterium breve DSM 20213 = JCM 1192	2	2008985-2009131	2	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	1	1	2009010-2009045	NZ_AP012324.1_2010347-2010382	NA	2	2	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA|702aa|up_3|NZ_AP012324.1_2004175_2006281_+,NA|318aa|down_0|NZ_AP012324.1_2009245_2010199_+	NA|125aa|up_9|NZ_AP012324.1_1987679_1988054_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3161aa|up_8|NZ_AP012324.1_1988926_1998409_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_AP012324.1_1998448_2000071_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_AP012324.1_2000063_2001932_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_AP012324.1_2002443_2003043_+	pfam02632, BioY, BioY family	NA|296aa|up_4|NZ_AP012324.1_2003044_2003932_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|702aa|up_3|NZ_AP012324.1_2004175_2006281_+	NA	NA|286aa|up_2|NZ_AP012324.1_2006359_2007217_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_AP012324.1_2007489_2008182_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_AP012324.1_2008197_2008629_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_AP012324.1_2009245_2010199_+	NA	NA|276aa|down_1|NZ_AP012324.1_2010554_2011382_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_AP012324.1_2011414_2011642_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_AP012324.1_2011971_2013177_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_AP012324.1_2013318_2014581_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_AP012324.1_2014676_2015810_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_AP012324.1_2015915_2017607_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_AP012324.1_2017673_2017925_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_AP012324.1_2017947_2018256_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1032aa|down_9|NZ_AP012324.1_2018442_2021538_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_001025175.1_ASM102517v1	NZ_AP012324	Bifidobacterium breve DSM 20213 = JCM 1192	3	2130541-2130625	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	CCTTCCCGAATATGTACCACTGAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA|239aa|up_9|NZ_AP012324.1_2116022_2116739_-,NA|57aa|down_2|NZ_AP012324.1_2135078_2135249_+,NA|98aa|down_5|NZ_AP012324.1_2139061_2139355_-,NA|211aa|down_7|NZ_AP012324.1_2142006_2142639_+,NA|116aa|down_8|NZ_AP012324.1_2142629_2142977_+	NA|239aa|up_9|NZ_AP012324.1_2116022_2116739_-	NA	NA|320aa|up_8|NZ_AP012324.1_2116944_2117904_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|598aa|up_7|NZ_AP012324.1_2118000_2119794_-	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains	NA|502aa|up_6|NZ_AP012324.1_2120069_2121575_-	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|487aa|up_5|NZ_AP012324.1_2121879_2123340_+	pfam02687, FtsX, FtsX-like permease family	NA|395aa|up_4|NZ_AP012324.1_2123336_2124521_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|255aa|up_3|NZ_AP012324.1_2124881_2125646_+	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein	NA|287aa|up_2|NZ_AP012324.1_2125775_2126636_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|804aa|up_1|NZ_AP012324.1_2126919_2129331_-	pfam02705, K_trans, K+ potassium transporter	NA|320aa|up_0|NZ_AP012324.1_2129529_2130489_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|602aa|down_0|NZ_AP012324.1_2130742_2132548_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|637aa|down_1|NZ_AP012324.1_2132747_2134658_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|57aa|down_2|NZ_AP012324.1_2135078_2135249_+	NA	NA|439aa|down_3|NZ_AP012324.1_2135365_2136682_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|83aa|down_4|NZ_AP012324.1_2137034_2137283_-	cd09004, GH43_bXyl-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (BT3675;BT_3675) and (BT3662;BT_3662); includes mostly xylanases	NA|98aa|down_5|NZ_AP012324.1_2139061_2139355_-	NA	NA|622aa|down_6|NZ_AP012324.1_2139864_2141730_-	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	NA|211aa|down_7|NZ_AP012324.1_2142006_2142639_+	NA	NA|116aa|down_8|NZ_AP012324.1_2142629_2142977_+	NA	NA|340aa|down_9|NZ_AP012324.1_2143096_2144116_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]
GCF_001025175.1_ASM102517v1	NZ_AP012324	Bifidobacterium breve DSM 20213 = JCM 1192	4	2159246-2159322	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA,NA	NA|340aa|up_9|NZ_AP012324.1_2143096_2144116_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_8|NZ_AP012324.1_2144776_2146195_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_7|NZ_AP012324.1_2146299_2147241_+	pfam02424, ApbE, ApbE family	NA|610aa|up_6|NZ_AP012324.1_2147249_2149079_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_5|NZ_AP012324.1_2149210_2151079_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_4|NZ_AP012324.1_2151262_2151784_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|76aa|up_3|NZ_AP012324.1_2152360_2152588_+	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|508aa|up_2|NZ_AP012324.1_2152724_2154248_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1226aa|up_1|NZ_AP012324.1_2154501_2158179_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_AP012324.1_2158269_2158971_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_AP012324.1_2159452_2160925_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_AP012324.1_2160976_2161582_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_AP012324.1_2161732_2162575_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_AP012324.1_2162574_2163429_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_AP012324.1_2163799_2164816_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|449aa|down_5|NZ_AP012324.1_2165023_2166370_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|238aa|down_6|NZ_AP012324.1_2166772_2167486_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_AP012324.1_2167557_2167935_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_AP012324.1_2168030_2168798_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_AP012324.1_2168963_2171711_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
