The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP012323	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 strain JCM 1255	2211039	53412	118566	2211039	tRNA,protease,transposase	Escherichia_phage(13.33%)	45	NA	NA
WP_014759675.1|53412_54510_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815101.1|54650_55031_+	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_013389343.1|55873_56479_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_033509620.1|56666_57692_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	46.5	4.2e-76
WP_021647511.1|58033_60637_+	RICIN domain-containing protein	NA	A0A1U9WQS3	Geobacillus_phage	30.8	3.2e-16
WP_033509590.1|60709_61654_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_021647508.1|64642_65758_+	acyltransferase	NA	NA	NA	NA	NA
WP_033509626.1|65957_67538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021647506.1|67611_70647_-	DUF4422 domain-containing protein	NA	A0A1V0SAH6	Catovirus	31.1	3.2e-07
WP_051265168.1|70874_71675_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_033509628.1|72250_73924_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_161788265.1|74101_74368_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_126436126.1|74436_74619_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_021647502.1|74698_75451_-	ATP-binding protein	NA	A0A0D4DBZ2	Acinetobacter_phage	24.1	9.7e-06
WP_021647501.1|75457_77008_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_126436125.1|77055_77352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021647500.1|78177_79407_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_161788266.1|79868_80708_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_080665028.1|80688_81228_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_161788267.1|81321_87471_-	InlB B-repeat-containing protein	NA	A0A1B0T6A2	Bacillus_phage	32.6	1.2e-08
WP_013141402.1|87683_88982_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	21.8	2.2e-05
WP_007052892.1|88984_89818_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_021647494.1|89956_91843_+	DUF4422 domain-containing protein	NA	NA	NA	NA	NA
WP_021647493.1|91903_93148_-	nucleotide sugar dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	52.2	4.5e-101
WP_021647491.1|93538_94819_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_117726484.1|95076_96344_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	40.9	8.0e-37
WP_033509601.1|96566_96770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_117726483.1|97548_98175_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	37.5	1.2e-06
WP_051265164.1|98184_99507_-	beta-glucosidase	NA	NA	NA	NA	NA
WP_021647483.1|99648_100827_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	32.7	4.4e-37
WP_033509605.1|101117_102296_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	44.2	4.7e-92
WP_080665026.1|102354_102990_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_033509607.1|102993_104781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033509636.1|104912_105935_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.8	5.8e-78
WP_021647476.1|106273_107545_-	MFS transporter	NA	NA	NA	NA	NA
WP_033509638.1|107701_108364_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811360.1|108958_109144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013362931.1|109374_111426_+	DHA2 family efflux MFS transporter permease subunit	NA	A0A2H4PQR6	Staphylococcus_phage	25.7	1.5e-05
WP_080545183.1|112191_112485_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	43.2	3.4e-07
WP_003811371.1|112906_113251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811373.1|113456_113864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811376.1|114200_116654_+	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	4.5e-12
WP_080545144.1|116822_117065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811385.1|117372_117594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021647471.1|117780_118566_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
>prophage 2
NZ_AP012323	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 strain JCM 1255	2211039	1075369	1116434	2211039	tail,terminase,tRNA,integrase,portal,capsid	Bifidobacterium_phage(96.36%)	58	1075422:1075438	1111172:1111188
WP_013389848.1|1075369_1076470_+|tRNA	tRNA (adenine-N1)-methyltransferase	tRNA	NA	NA	NA	NA
1075422:1075438	attL	ACCGCAAGGGCAAGAAG	NA	NA	NA	NA
WP_021648663.1|1076589_1077147_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_003812969.1|1077402_1078623_+|integrase	site-specific integrase	integrase	I3NLE2	Bifidobacterium_phage	98.0	4.6e-239
WP_021648662.1|1078712_1079240_+	ImmA/IrrE family metallo-endopeptidase	NA	Q854W5	Mycobacterium_virus	38.9	1.6e-18
WP_021648661.1|1079236_1079728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047937777.1|1079791_1080184_-	ImmA/IrrE family metallo-endopeptidase	NA	I3NLD5	Bifidobacterium_phage	83.8	6.7e-51
WP_003816210.1|1080422_1081451_-	virulence RhuM family protein	NA	Q9JMN3	Wolbachia_phage	42.6	2.4e-71
WP_021648658.1|1081495_1081897_-	hypothetical protein	NA	I3NLD3	Bifidobacterium_phage	67.6	5.0e-17
WP_021648657.1|1082020_1082266_+	helix-turn-helix domain-containing protein	NA	I3NLD2	Bifidobacterium_phage	98.8	4.2e-35
WP_021648656.1|1082650_1083142_-	hypothetical protein	NA	I3NLD1	Bifidobacterium_phage	69.8	1.5e-15
WP_021648655.1|1083166_1083961_+	phage antirepressor KilAC domain-containing protein	NA	I3NLD0	Bifidobacterium_phage	85.8	1.6e-123
WP_003812999.1|1084108_1084564_-	hypothetical protein	NA	I3NLC9	Bifidobacterium_phage	99.1	2.5e-65
WP_033509676.1|1084845_1085088_-	hypothetical protein	NA	I3NLC8	Bifidobacterium_phage	96.9	6.4e-28
WP_003813003.1|1085207_1085441_+	DNA-binding protein	NA	I3NLC7	Bifidobacterium_phage	97.4	8.0e-36
WP_003820450.1|1085469_1085685_+	hypothetical protein	NA	I3NLC6	Bifidobacterium_phage	98.0	1.3e-19
WP_021647707.1|1085681_1085918_+	hypothetical protein	NA	I3NLC5	Bifidobacterium_phage	96.1	3.6e-36
WP_021647708.1|1086195_1086540_+	hypothetical protein	NA	I3NLC4	Bifidobacterium_phage	94.7	3.3e-54
WP_021647709.1|1086539_1087070_+	single-stranded DNA-binding protein	NA	I3NLC3	Bifidobacterium_phage	99.4	2.5e-93
WP_021647710.1|1087088_1088486_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	99.8	3.1e-276
WP_021647711.1|1088482_1089376_+	helix-turn-helix domain-containing protein	NA	I3NLC1	Bifidobacterium_phage	87.9	5.7e-146
WP_003813015.1|1089372_1089564_+	hypothetical protein	NA	I3NLC0	Bifidobacterium_phage	100.0	3.3e-27
WP_003813016.1|1089560_1089965_+	hypothetical protein	NA	I3NLB9	Bifidobacterium_phage	100.0	5.8e-82
WP_033509679.1|1089961_1090543_+	oligoribonuclease	NA	I3NLB8	Bifidobacterium_phage	99.5	4.2e-110
WP_003813021.1|1090539_1090818_+	hypothetical protein	NA	I3NLB7	Bifidobacterium_phage	100.0	4.9e-48
WP_003813023.1|1090814_1091120_+	hypothetical protein	NA	I3NLB6	Bifidobacterium_phage	100.0	6.8e-51
WP_003813024.1|1091122_1091320_+	hypothetical protein	NA	I3NLB5	Bifidobacterium_phage	100.0	4.7e-29
WP_021647714.1|1091363_1092113_+	hypothetical protein	NA	I3NLB4	Bifidobacterium_phage	97.2	2.2e-143
WP_021647715.1|1092133_1092343_+	type II toxin-antitoxin system HicA family toxin	NA	I3NLB3	Bifidobacterium_phage	98.5	2.0e-33
WP_003820654.1|1092339_1092750_+	type II toxin-antitoxin system HicB family antitoxin	NA	I3NLB2	Bifidobacterium_phage	99.3	3.5e-74
WP_003813031.1|1092751_1092919_+	transcriptional regulator	NA	I3NLB1	Bifidobacterium_phage	100.0	4.6e-25
WP_003813034.1|1093071_1093275_-	hypothetical protein	NA	I3NLB0	Bifidobacterium_phage	100.0	7.2e-33
WP_021647724.1|1093264_1093423_-	hypothetical protein	NA	I3NLA9	Bifidobacterium_phage	90.4	8.7e-18
WP_033509722.1|1093725_1094094_+	HNH endonuclease	NA	I3NLA7	Bifidobacterium_phage	98.6	1.5e-36
WP_013389872.1|1094379_1094967_+	bifunctional DNA primase/polymerase	NA	I3NLA6	Bifidobacterium_phage	100.0	1.5e-115
WP_003813042.1|1094986_1095376_+	hypothetical protein	NA	I3NLA5	Bifidobacterium_phage	100.0	1.4e-69
WP_013389873.1|1095375_1097178_+|terminase	terminase	terminase	I3NLA4	Bifidobacterium_phage	100.0	0.0e+00
WP_021647727.1|1097171_1098578_+|portal	phage portal protein	portal	I3NLA3	Bifidobacterium_phage	99.4	5.2e-279
WP_013389875.1|1098561_1099776_+	EndoU domain-containing protein	NA	I3NLA2	Bifidobacterium_phage	100.0	2.2e-241
WP_003816704.1|1099772_1100033_+	hypothetical protein	NA	I3NLA1	Bifidobacterium_phage	100.0	1.8e-44
WP_021647728.1|1100340_1100904_+	hypothetical protein	NA	I3NLA0	Bifidobacterium_phage	86.7	8.4e-79
WP_003816701.1|1100933_1101890_+|capsid	phage major capsid protein	capsid	I3NL99	Bifidobacterium_phage	99.4	3.6e-175
WP_003816698.1|1101889_1102324_+	hypothetical protein	NA	I3NL98	Bifidobacterium_phage	98.6	2.0e-64
WP_021648013.1|1102337_1102835_+	hypothetical protein	NA	I3NL97	Bifidobacterium_phage	99.4	4.9e-91
WP_003813058.1|1102831_1103266_+	hypothetical protein	NA	I3NL96	Bifidobacterium_phage	98.9	1.4e-44
WP_003813060.1|1103255_1103684_+	hypothetical protein	NA	I3NL95	Bifidobacterium_phage	100.0	1.4e-73
WP_003813063.1|1103680_1104091_+	transcriptional regulator	NA	I3NL94	Bifidobacterium_phage	100.0	8.5e-73
WP_003823514.1|1104164_1104707_+	hypothetical protein	NA	I3NL93	Bifidobacterium_phage	99.4	1.0e-94
WP_003823512.1|1104801_1105308_+	DNAase primase	NA	I3NL92	Bifidobacterium_phage	98.2	3.8e-83
WP_003813069.1|1105370_1105667_+	hypothetical protein	NA	I3NL91	Bifidobacterium_phage	100.0	6.4e-54
WP_021648014.1|1105677_1108812_+|tail	phage tail tape measure protein	tail	I3NL90	Bifidobacterium_phage	98.9	0.0e+00
WP_033509685.1|1108808_1109588_+	3-hydroxy-3-methylglutaryl CoA synthase	NA	I3NL89	Bifidobacterium_phage	97.2	7.9e-144
WP_021648016.1|1109589_1111452_+|tail	phage tail protein	tail	I3NL88	Bifidobacterium_phage	98.1	0.0e+00
1111172:1111188	attR	ACCGCAAGGGCAAGAAG	NA	NA	NA	NA
WP_021648017.1|1111462_1111858_+	hypothetical protein	NA	I3NL87	Bifidobacterium_phage	97.7	1.4e-64
WP_021648018.1|1111854_1113687_+	hypothetical protein	NA	I3NL86	Bifidobacterium_phage	96.2	2.8e-208
WP_033509724.1|1113787_1114561_+	hypothetical protein	NA	I3NL85	Bifidobacterium_phage	99.6	3.6e-72
WP_003822313.1|1114553_1114961_+	hypothetical protein	NA	I3NL84	Bifidobacterium_phage	100.0	3.0e-70
WP_003813084.1|1115191_1115617_+	hypothetical protein	NA	I3NL83	Bifidobacterium_phage	98.6	1.6e-66
WP_003816679.1|1115600_1116434_+	CHAP domain-containing protein	NA	I3NL82	Bifidobacterium_phage	98.3	2.9e-128
