assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001023495.1_ASM102349v1	NZ_CP011068	Streptococcus pyogenes strain STAB10015 chromosome, complete genome	1	366280-366389	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	ATCAGGATTTAGAAGGTACAGAACAGACAGAT	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|151aa|up_5|NZ_CP011068.1_359580_360033_+,NA|158aa|up_4|NZ_CP011068.1_362047_362521_+,NA|84aa|up_3|NZ_CP011068.1_362773_363025_+,NA|167aa|up_2|NZ_CP011068.1_363397_363898_-,NA|46aa|up_0|NZ_CP011068.1_365065_365203_-,NA|84aa|down_6|NZ_CP011068.1_372904_373156_+,NA|114aa|down_8|NZ_CP011068.1_374021_374363_+	NA|338aa|up_9|NZ_CP011068.1_354514_355528_+	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional	NA|163aa|up_8|NZ_CP011068.1_355531_356020_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|727aa|up_7|NZ_CP011068.1_355986_358167_+	PRK07187, PRK07187, ribonucleoside-diphosphate reductase subunit alpha	NA|251aa|up_6|NZ_CP011068.1_358371_359124_-	cd00233, VIP2, VIP2; A family of actin-ADP-ribosylating toxin	NA|151aa|up_5|NZ_CP011068.1_359580_360033_+	NA	NA|158aa|up_4|NZ_CP011068.1_362047_362521_+	NA	NA|84aa|up_3|NZ_CP011068.1_362773_363025_+	NA	NA|167aa|up_2|NZ_CP011068.1_363397_363898_-	NA	NA|233aa|up_1|NZ_CP011068.1_364165_364864_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|46aa|up_0|NZ_CP011068.1_365065_365203_-	NA	NA|79aa|down_0|NZ_CP011068.1_367132_367369_+	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|233aa|down_1|NZ_CP011068.1_367361_368060_+	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|320aa|down_2|NZ_CP011068.1_368135_369095_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|446aa|down_3|NZ_CP011068.1_369427_370765_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|461aa|down_4|NZ_CP011068.1_370937_372320_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|185aa|down_5|NZ_CP011068.1_372350_372905_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|84aa|down_6|NZ_CP011068.1_372904_373156_+	NA	NA|232aa|down_7|NZ_CP011068.1_373175_373871_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|114aa|down_8|NZ_CP011068.1_374021_374363_+	NA	NA|216aa|down_9|NZ_CP011068.1_374461_375109_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]
GCF_001023495.1_ASM102349v1	NZ_CP011068	Streptococcus pyogenes strain STAB10015 chromosome, complete genome	2	776961-777260	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-C,Type II-A,Type II-B	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	3,4,4	4	TypeII-C,TypeII-A,TypeII-B	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NZ_CP011068.1_766455_767097_+,NA	NA|452aa|up_9|NZ_CP011068.1_764976_766332_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP011068.1_766455_767097_+	NA	NA|377aa|up_7|NZ_CP011068.1_767159_768290_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP011068.1_768299_769052_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP011068.1_769051_769816_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP011068.1_769815_770448_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP011068.1_770892_774999_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP011068.1_774998_775868_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP011068.1_775864_776206_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP011068.1_776195_776858_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|378aa|down_0|NZ_CP011068.1_777408_778542_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|611aa|down_1|NZ_CP011068.1_778710_780543_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|146aa|down_2|NZ_CP011068.1_782118_782556_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_CP011068.1_782685_783705_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_CP011068.1_783911_784337_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_CP011068.1_784355_784847_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_CP011068.1_784863_785673_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_CP011068.1_785669_786497_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_CP011068.1_786632_788282_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_CP011068.1_788285_789074_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_001023495.1_ASM102349v1	NZ_CP011068	Streptococcus pyogenes strain STAB10015 chromosome, complete genome	3	1325610-1325772	2	PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACTCACCCATGAAGGGTGAGACT	33	0	0	NA	NA	I-C	2	2	TypeI-U?,TypeI-C,TypeI-U	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|64aa|up_7|NZ_CP011068.1_1319297_1319489_-,NA|174aa|up_4|NZ_CP011068.1_1321048_1321570_+,NA|188aa|down_8|NZ_CP011068.1_1336742_1337306_-	NA|67aa|up_9|NZ_CP011068.1_1318179_1318380_+	pfam13619, KTSC, KTSC domain	NA|243aa|up_8|NZ_CP011068.1_1318558_1319287_-	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|64aa|up_7|NZ_CP011068.1_1319297_1319489_-	NA	NA|120aa|up_6|NZ_CP011068.1_1320284_1320644_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|127aa|up_5|NZ_CP011068.1_1320657_1321038_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|174aa|up_4|NZ_CP011068.1_1321048_1321570_+	NA	NA|385aa|up_3|NZ_CP011068.1_1321688_1322843_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|369aa|up_2|NZ_CP011068.1_1322953_1324060_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP011068.1_1324102_1324726_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP011068.1_1324738_1325449_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP011068.1_1325919_1326213_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_CP011068.1_1326223_1327249_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP011068.1_1327245_1327920_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_CP011068.1_1327921_1328770_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_CP011068.1_1328774_1330670_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NZ_CP011068.1_1330669_1331398_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_CP011068.1_1331530_1333939_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_CP011068.1_1334092_1336741_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_CP011068.1_1336742_1337306_-	NA	NA|132aa|down_9|NZ_CP011068.1_1337907_1338303_-	PRK07758, PRK07758, hypothetical protein; Provisional
GCF_001023495.1_ASM102349v1	NZ_CP011068	Streptococcus pyogenes strain STAB10015 chromosome, complete genome	4	1908408-1908504	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|58aa|up_9|NZ_CP011068.1_1903513_1903687_-,NA|538aa|up_8|NZ_CP011068.1_1903973_1905587_-,NA|174aa|up_7|NZ_CP011068.1_1905576_1906098_-,NA|123aa|up_6|NZ_CP011068.1_1906107_1906476_-,NA|64aa|up_5|NZ_CP011068.1_1906384_1906576_-,NA|111aa|up_4|NZ_CP011068.1_1906575_1906908_-,NA|61aa|up_3|NZ_CP011068.1_1906919_1907102_-,NA|81aa|up_2|NZ_CP011068.1_1907322_1907565_-,NA	NA|58aa|up_9|NZ_CP011068.1_1903513_1903687_-	NA	NA|538aa|up_8|NZ_CP011068.1_1903973_1905587_-	NA	NA|174aa|up_7|NZ_CP011068.1_1905576_1906098_-	NA	NA|123aa|up_6|NZ_CP011068.1_1906107_1906476_-	NA	NA|64aa|up_5|NZ_CP011068.1_1906384_1906576_-	NA	NA|111aa|up_4|NZ_CP011068.1_1906575_1906908_-	NA	NA|61aa|up_3|NZ_CP011068.1_1906919_1907102_-	NA	NA|81aa|up_2|NZ_CP011068.1_1907322_1907565_-	NA	NA|189aa|up_1|NZ_CP011068.1_1907621_1908188_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|NZ_CP011068.1_1908203_1908392_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NZ_CP011068.1_1908560_1909004_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|NZ_CP011068.1_1909183_1910347_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|NZ_CP011068.1_1910503_1911115_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|NZ_CP011068.1_1911844_1912117_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|454aa|down_4|NZ_CP011068.1_1912133_1913495_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|NZ_CP011068.1_1913530_1913983_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|NZ_CP011068.1_1913979_1915956_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|NZ_CP011068.1_1916045_1917944_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|NZ_CP011068.1_1918067_1918385_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|NZ_CP011068.1_1919160_1920282_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
