assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001022175.1_ASM102217v1	NZ_CP011624	Klebsiella pneumoniae strain CAV1344 chromosome, complete genome	1	1383001-1383095	1	CRISPRCasFinder	no		RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ACTATGGTTTTTATGGTTTTTATT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|256aa|up_9|NZ_CP011624.1_1368320_1369088_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|282aa|up_8|NZ_CP011624.1_1369216_1370062_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|570aa|up_7|NZ_CP011624.1_1370399_1372109_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_6|NZ_CP011624.1_1372119_1373622_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|up_5|NZ_CP011624.1_1373759_1374455_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|786aa|up_4|NZ_CP011624.1_1374630_1376988_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_3|NZ_CP011624.1_1377175_1380082_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_2|NZ_CP011624.1_1380094_1380754_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|180aa|up_1|NZ_CP011624.1_1380828_1381368_-	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|455aa|up_0|NZ_CP011624.1_1381547_1382912_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|542aa|down_0|NZ_CP011624.1_1383236_1384862_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|233aa|down_1|NZ_CP011624.1_1384851_1385550_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|276aa|down_2|NZ_CP011624.1_1385582_1386410_-	PRK09430, djlA, co-chaperone DjlA	NA|783aa|down_3|NZ_CP011624.1_1386653_1389002_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_4|NZ_CP011624.1_1389056_1390343_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_5|NZ_CP011624.1_1390348_1391338_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_6|NZ_CP011624.1_1391334_1392156_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_7|NZ_CP011624.1_1392158_1392536_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|down_8|NZ_CP011624.1_1392540_1393389_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_9|NZ_CP011624.1_1393644_1394124_-	PRK10769, folA, type 3 dihydrofolate reductase
GCF_001022175.1_ASM102217v1	NZ_CP011624	Klebsiella pneumoniae strain CAV1344 chromosome, complete genome	2	3291974-3294561	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	2	3	3292308-3292339|3294443-3294474|3294443-3294474	NZ_CP011624.1_860019-859988|NZ_CP011623.1_56734-56703|NZ_CP011623.1_89144-89113	I-E:I-E:I-E	42,42,25	42	TypeI-E	RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|571aa|up_9|NZ_CP011624.1_3280681_3282394_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP011624.1_3282492_3283227_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|888aa|up_7|NZ_CP011624.1_3283433_3286097_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP011624.1_3286108_3287665_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|181aa|up_5|NZ_CP011624.1_3287661_3288204_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP011624.1_3288222_3289278_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP011624.1_3289288_3290035_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP011624.1_3290016_3290667_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP011624.1_3290663_3291584_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP011624.1_3291583_3291877_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|396aa|down_0|NZ_CP011624.1_3296650_3297838_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|352aa|down_1|NZ_CP011624.1_3297873_3298929_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|469aa|down_2|NZ_CP011624.1_3299175_3300582_+	PRK10637, cysG, siroheme synthase CysG	NA|303aa|down_3|NZ_CP011624.1_3300591_3301500_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_4|NZ_CP011624.1_3301509_3302937_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_5|NZ_CP011624.1_3302936_3303542_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|109aa|down_6|NZ_CP011624.1_3303592_3303919_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|106aa|down_7|NZ_CP011624.1_3304059_3304377_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_8|NZ_CP011624.1_3304396_3305107_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_9|NZ_CP011624.1_3305106_3305586_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
GCF_001022175.1_ASM102217v1	NZ_CP011624	Klebsiella pneumoniae strain CAV1344 chromosome, complete genome	3	5197491-5197585	3	CRISPRCasFinder	no		RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGCACTACCCCCTGGTGAATCTCCTGCAC	29	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|68aa|up_9|NZ_CP011624.1_5189160_5189364_-,NA|117aa|up_8|NZ_CP011624.1_5189879_5190230_-,NA|362aa|up_5|NZ_CP011624.1_5191929_5193015_+,NA|103aa|down_3|NZ_CP011624.1_5199329_5199638_+,NA|65aa|down_4|NZ_CP011624.1_5199627_5199822_+,NA|75aa|down_5|NZ_CP011624.1_5199992_5200217_+,NA|122aa|down_6|NZ_CP011624.1_5200217_5200583_+,NA|85aa|down_7|NZ_CP011624.1_5200575_5200830_+,NA|73aa|down_8|NZ_CP011624.1_5200801_5201020_+,NA|147aa|down_9|NZ_CP011624.1_5201016_5201457_+	NA|68aa|up_9|NZ_CP011624.1_5189160_5189364_-	NA	NA|117aa|up_8|NZ_CP011624.1_5189879_5190230_-	NA	NA|166aa|up_7|NZ_CP011624.1_5190435_5190933_-	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|90aa|up_6|NZ_CP011624.1_5190910_5191180_-	pfam16080, Phage_holin_2_3, Bacteriophage holin family HP1	NA|362aa|up_5|NZ_CP011624.1_5191929_5193015_+	NA	NA|331aa|up_4|NZ_CP011624.1_5193014_5194007_+	smart00954, RelA_SpoT, Region found in RelA / SpoT proteins	NA|116aa|up_3|NZ_CP011624.1_5194046_5194394_-	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|127aa|up_2|NZ_CP011624.1_5194386_5194767_-	pfam05866, RusA, Endodeoxyribonuclease RusA	NA|460aa|up_1|NZ_CP011624.1_5194753_5196133_-	TIGR00665, DnaB, replicative DNA helicase	NA|293aa|up_0|NZ_CP011624.1_5196129_5197008_-	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|63aa|down_0|NZ_CP011624.1_5197846_5198035_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|76aa|down_1|NZ_CP011624.1_5198110_5198338_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|236aa|down_2|NZ_CP011624.1_5198462_5199170_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|103aa|down_3|NZ_CP011624.1_5199329_5199638_+	NA	NA|65aa|down_4|NZ_CP011624.1_5199627_5199822_+	NA	NA|75aa|down_5|NZ_CP011624.1_5199992_5200217_+	NA	NA|122aa|down_6|NZ_CP011624.1_5200217_5200583_+	NA	NA|85aa|down_7|NZ_CP011624.1_5200575_5200830_+	NA	NA|73aa|down_8|NZ_CP011624.1_5200801_5201020_+	NA	NA|147aa|down_9|NZ_CP011624.1_5201016_5201457_+	NA
