assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	1	406759-406859	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP007674.1_398331_398541_-,NA|128aa|up_6|NZ_CP007674.1_399365_399749_-,NA|34aa|up_0|NZ_CP007674.1_405983_406085_+,NA|221aa|down_1|NZ_CP007674.1_407949_408612_-,NA|179aa|down_7|NZ_CP007674.1_414703_415240_-	NA|84aa|up_9|NZ_CP007674.1_398041_398293_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP007674.1_398331_398541_-	NA	NA|194aa|up_7|NZ_CP007674.1_398718_399300_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP007674.1_399365_399749_-	NA	NA|209aa|up_5|NZ_CP007674.1_400003_400630_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP007674.1_401074_402598_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP007674.1_402613_403183_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP007674.1_403674_404430_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP007674.1_404510_405899_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP007674.1_405983_406085_+	NA	NA|319aa|down_0|NZ_CP007674.1_406875_407832_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP007674.1_407949_408612_-	NA	NA|136aa|down_2|NZ_CP007674.1_408754_409162_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP007674.1_409674_410253_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP007674.1_410252_411521_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP007674.1_411558_413025_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP007674.1_413049_414591_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP007674.1_414703_415240_-	NA	NA|243aa|down_8|NZ_CP007674.1_415608_416337_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP007674.1_416735_417008_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2	651102-651194	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP007674.1_647586_647694_+,NA|169aa|down_4|NZ_CP007674.1_654941_655448_+,NA|239aa|down_5|NZ_CP007674.1_655609_656326_+	NA|313aa|up_9|NZ_CP007674.1_641788_642727_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP007674.1_642937_643474_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP007674.1_643642_644119_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP007674.1_644158_645454_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP007674.1_645481_646003_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP007674.1_646501_647512_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP007674.1_647586_647694_+	NA	NA|139aa|up_2|NZ_CP007674.1_647786_648203_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP007674.1_648199_649861_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP007674.1_650248_650884_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP007674.1_651262_652150_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP007674.1_652297_653248_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP007674.1_653302_654022_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP007674.1_654005_654806_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP007674.1_654941_655448_+	NA	NA|239aa|down_5|NZ_CP007674.1_655609_656326_+	NA	NA|263aa|down_6|NZ_CP007674.1_656494_657283_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP007674.1_657533_657908_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP007674.1_658855_659785_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP007674.1_659979_660204_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	3	808315-808395	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	808341-808369|808341-808369|808341-808369|808341-808369|808341-808369|808341-808369|808341-808369|808341-808369|808341-808369|808341-808369	NZ_CP007674.1_2796807-2796835|NZ_CP007674.1_368254-368226|NZ_CP007674.1_368309-368281|NZ_CP007674.1_1839219-1839191|NZ_CP007674.1_857108-857136|NZ_CP007674.1_939522-939550|NZ_CP007674.1_1137835-1137807|NZ_CP007674.1_1660670-1660698|NZ_CP007674.1_2006474-2006502|NZ_CP007674.1_2546089-2546061	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NZ_CP007674.1_799228_799333_+,NA|36aa|up_5|NZ_CP007674.1_800765_800873_+,NA	NA|191aa|up_9|NZ_CP007674.1_795669_796242_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP007674.1_796655_799187_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP007674.1_799228_799333_+	NA	NA|370aa|up_6|NZ_CP007674.1_799501_800612_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP007674.1_800765_800873_+	NA	NA|280aa|up_4|NZ_CP007674.1_801020_801860_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP007674.1_802033_802684_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP007674.1_802680_802917_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP007674.1_803185_805171_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP007674.1_805178_808025_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP007674.1_808631_809564_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP007674.1_809569_810409_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP007674.1_810416_810902_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP007674.1_810909_812349_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP007674.1_812415_813351_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP007674.1_814230_815142_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP007674.1_815138_816134_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP007674.1_816243_817188_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP007674.1_817761_818349_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP007674.1_818591_819494_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	4	813713-813798	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	813743-813768|813743-813768|813743-813768|813743-813768|813743-813768	NZ_CP007674.1_776760-776735|NZ_CP007674.1_2796719-2796744|NZ_CP007674.1_2796775-2796800|NZ_CP007674.1_776816-776791|NZ_CP007674.1_919852-919827	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP007674.1_801020_801860_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP007674.1_802033_802684_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP007674.1_802680_802917_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP007674.1_803185_805171_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP007674.1_805178_808025_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP007674.1_808631_809564_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP007674.1_809569_810409_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP007674.1_810416_810902_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP007674.1_810909_812349_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP007674.1_812415_813351_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP007674.1_814230_815142_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP007674.1_815138_816134_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP007674.1_816243_817188_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP007674.1_817761_818349_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP007674.1_818591_819494_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP007674.1_820195_820825_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP007674.1_821584_822598_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP007674.1_822650_823661_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP007674.1_823799_824990_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP007674.1_825111_825873_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	5	857042-857123	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	857066-857099|857066-857099	NZ_CP007674.1_1346058-1346025|NZ_CP007674.1_1435217-1435250	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP007674.1_850145_850727_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP007674.1_850799_851417_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP007674.1_851571_852066_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP007674.1_852464_852887_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP007674.1_853034_853751_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP007674.1_853833_854373_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP007674.1_854522_854843_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP007674.1_854986_855343_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP007674.1_855500_855881_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP007674.1_856059_856938_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP007674.1_857679_858066_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP007674.1_858058_858355_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP007674.1_858604_859630_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP007674.1_859622_860318_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP007674.1_860335_861157_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP007674.1_861299_862520_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP007674.1_862607_863336_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP007674.1_863359_864088_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP007674.1_864104_864563_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP007674.1_864574_864907_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	6	919853-920135	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	919883-919908|919883-919908|919883-919908|919883-919908|919997-920022|919997-920022	NZ_CP007674.1_919827-919852|NZ_CP007674.1_776735-776760|NZ_CP007674.1_2796744-2796719|NZ_CP007674.1_2796800-2796775|NZ_CP007674.1_813824-813799|NZ_CP007674.1_368092-368117	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP007674.1_908741_910238_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP007674.1_910230_910572_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP007674.1_910571_911000_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP007674.1_910992_913398_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP007674.1_913528_913912_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP007674.1_913975_914569_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP007674.1_914984_915362_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP007674.1_915723_916851_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP007674.1_917158_918349_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP007674.1_918457_919702_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP007674.1_920204_921134_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP007674.1_921375_922755_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP007674.1_922744_923950_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP007674.1_924300_925632_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP007674.1_925956_926532_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP007674.1_926536_927061_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP007674.1_927076_927652_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP007674.1_927811_931288_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP007674.1_931288_934942_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP007674.1_935107_936010_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	7	1053525-1053612	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP007674.1_1053621_1053756_-,NA|432aa|down_1|NZ_CP007674.1_1053907_1055203_+	NA|224aa|up_9|NZ_CP007674.1_1041315_1041987_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP007674.1_1041979_1044169_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP007674.1_1044147_1045632_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP007674.1_1045624_1046653_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP007674.1_1046655_1047222_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP007674.1_1047236_1048715_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP007674.1_1048736_1049984_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP007674.1_1050248_1051055_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP007674.1_1051047_1052448_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP007674.1_1052462_1053038_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP007674.1_1053621_1053756_-	NA	NA|432aa|down_1|NZ_CP007674.1_1053907_1055203_+	NA	NA|391aa|down_2|NZ_CP007674.1_1055627_1056800_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP007674.1_1056853_1057396_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP007674.1_1057549_1057816_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP007674.1_1057818_1059537_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP007674.1_1059773_1060007_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP007674.1_1060204_1061566_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP007674.1_1061562_1062582_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP007674.1_1062714_1063377_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	8	1961549-1961676	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_9|NZ_CP007674.1_1952133_1952529_-,NA|51aa|up_8|NZ_CP007674.1_1953305_1953458_-,NA|38aa|up_0|NZ_CP007674.1_1961314_1961428_+,NA|31aa|down_5|NZ_CP007674.1_1974465_1974558_-	NA|132aa|up_9|NZ_CP007674.1_1952133_1952529_-	NA	NA|51aa|up_8|NZ_CP007674.1_1953305_1953458_-	NA	NA|200aa|up_7|NZ_CP007674.1_1953482_1954082_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_6|NZ_CP007674.1_1954240_1954711_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_5|NZ_CP007674.1_1954715_1955843_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|up_4|NZ_CP007674.1_1955993_1956716_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_3|NZ_CP007674.1_1956708_1958166_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_2|NZ_CP007674.1_1958423_1959485_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|454aa|up_1|NZ_CP007674.1_1959977_1961339_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|38aa|up_0|NZ_CP007674.1_1961314_1961428_+	NA	NA|149aa|down_0|NZ_CP007674.1_1969664_1970111_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP007674.1_1970207_1971158_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP007674.1_1971163_1971619_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP007674.1_1971699_1972989_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP007674.1_1973281_1974376_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|31aa|down_5|NZ_CP007674.1_1974465_1974558_-	NA	NA|579aa|down_6|NZ_CP007674.1_1974566_1976303_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_7|NZ_CP007674.1_1976593_1977136_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_8|NZ_CP007674.1_1977437_1978475_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|NZ_CP007674.1_1978626_1979604_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	9	1995707-1995785	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1995730-1995762|1995730-1995762|1995730-1995762|1995730-1995762|1995730-1995762|1995730-1995762	NZ_CP007674.1_813779-813811|NZ_CP007674.1_1137888-1137856|NZ_CP007674.1_1346012-1345980|NZ_CP007674.1_1660731-1660763|NZ_CP007674.1_2631246-2631278|NZ_CP007674.1_1435263-1435295	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP007674.1_1989901_1990177_+,NA|129aa|up_1|NZ_CP007674.1_1994162_1994549_-,NA|138aa|down_1|NZ_CP007674.1_1997468_1997882_-,NA|37aa|down_2|NZ_CP007674.1_1997910_1998021_-,NA|31aa|down_6|NZ_CP007674.1_2001026_2001119_-	NA|419aa|up_9|NZ_CP007674.1_1987824_1989081_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP007674.1_1989083_1989284_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP007674.1_1989430_1989895_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP007674.1_1989901_1990177_+	NA	NA|406aa|up_5|NZ_CP007674.1_1990454_1991672_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP007674.1_1991787_1992417_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP007674.1_1992406_1993450_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP007674.1_1993446_1994148_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP007674.1_1994162_1994549_-	NA	NA|253aa|up_0|NZ_CP007674.1_1994765_1995524_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP007674.1_1996051_1997038_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP007674.1_1997468_1997882_-	NA	NA|37aa|down_2|NZ_CP007674.1_1997910_1998021_-	NA	NA|244aa|down_3|NZ_CP007674.1_1998106_1998838_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP007674.1_1998839_2000153_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP007674.1_2000444_2000945_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP007674.1_2001026_2001119_-	NA	DEDDh|185aa|down_7|NZ_CP007674.1_2001333_2001888_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP007674.1_2001955_2003026_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP007674.1_2003272_2003803_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	10	2230600-2230750	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP007674.1_2225471_2225702_-,NA|364aa|up_0|NZ_CP007674.1_2229490_2230582_+,NA|35aa|down_0|NZ_CP007674.1_2231081_2231186_-,NA|31aa|down_2|NZ_CP007674.1_2233297_2233390_+	NA|237aa|up_9|NZ_CP007674.1_2221081_2221792_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP007674.1_2221912_2222356_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP007674.1_2222555_2222969_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP007674.1_2223426_2224800_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP007674.1_2225471_2225702_-	NA	NA|313aa|up_4|NZ_CP007674.1_2225732_2226671_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP007674.1_2227105_2227771_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP007674.1_2227922_2228243_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP007674.1_2228244_2229225_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP007674.1_2229490_2230582_+	NA	NA|35aa|down_0|NZ_CP007674.1_2231081_2231186_-	NA	NA|379aa|down_1|NZ_CP007674.1_2231872_2233009_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP007674.1_2233297_2233390_+	NA	NA|286aa|down_3|NZ_CP007674.1_2234094_2234952_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP007674.1_2235019_2235802_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP007674.1_2236033_2237839_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP007674.1_2238519_2240058_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP007674.1_2240092_2242225_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP007674.1_2242236_2242671_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP007674.1_2242670_2243777_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001021895.1_ASM102189v1	NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	11	2354518-2354711	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2354541-2354573|2354541-2354573|2354541-2354573|2354541-2354573|2354541-2354573|2354597-2354632|2354597-2354632|2354597-2354632|2354597-2354632|2354656-2354688|2354656-2354688|2354656-2354688|2354656-2354688	NZ_CP007674.1_813779-813811|NZ_CP007674.1_1137888-1137856|NZ_CP007674.1_1346012-1345980|NZ_CP007674.1_1435263-1435295|NZ_CP007674.1_2631246-2631278|NZ_CP007674.1_1137835-1137800|NZ_CP007674.1_1839219-1839184|NZ_CP007674.1_1660670-1660705|NZ_CP007674.1_2006474-2006509|NZ_CP007674.1_813779-813811|NZ_CP007674.1_1137888-1137856|NZ_CP007674.1_1346012-1345980|NZ_CP007674.1_2631246-2631278	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP007674.1_2345045_2345210_+,NA|106aa|up_8|NZ_CP007674.1_2345454_2345772_+,NA|84aa|up_5|NZ_CP007674.1_2350896_2351148_+,NA|57aa|up_0|NZ_CP007674.1_2354287_2354458_+,NA	NA|55aa|up_9|NZ_CP007674.1_2345045_2345210_+	NA	NA|106aa|up_8|NZ_CP007674.1_2345454_2345772_+	NA	NA|1056aa|up_7|NZ_CP007674.1_2345958_2349126_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP007674.1_2349242_2350508_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP007674.1_2350896_2351148_+	NA	NA|255aa|up_4|NZ_CP007674.1_2351139_2351904_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP007674.1_2352065_2352506_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP007674.1_2352498_2353710_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP007674.1_2353811_2354162_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP007674.1_2354287_2354458_+	NA	NA|341aa|down_0|NZ_CP007674.1_2354852_2355875_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP007674.1_2355894_2356494_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP007674.1_2356500_2356734_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP007674.1_2356739_2357186_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP007674.1_2357199_2357685_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP007674.1_2357681_2358941_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP007674.1_2359003_2359498_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP007674.1_2359499_2360006_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP007674.1_2360036_2361041_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP007674.1_2361210_2361816_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
