The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	745426	753246	2839253		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|745426_746482_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|746481_747168_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|747142_747616_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|747957_748398_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|748677_749262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|749360_750074_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|750077_750497_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|750498_751167_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|751517_752111_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|752094_753246_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	765218	779949	2839253		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|765218_766277_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|766627_767170_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|767793_768711_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|768801_768903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|768980_770486_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|770826_771327_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|771346_772213_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|773013_773412_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|773374_775480_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|775597_776569_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|777082_777238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|777276_778248_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|778234_779191_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|779187_779949_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	858604	874433	2839253	capsid,integrase	Staphylococcus_phage(64.71%)	21	861141:861157	875097:875113
WP_000571218.1|858604_859630_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|859622_860318_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|860335_861157_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
861141:861157	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266158.1|861299_862520_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|862607_863336_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|863359_864088_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000281658.1|864104_864563_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|864574_864907_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|865099_865363_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|865355_865628_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000784892.1|865639_865813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|865779_865983_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403840.1|865984_866368_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|866368_866617_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_000985235.1|866708_869081_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|869751_870096_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|870320_870527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|870513_871572_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|871755_872247_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000801979.1|872675_873644_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|873878_874433_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
875097:875113	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 4
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	964987	1018763	2839253	tRNA,bacteriocin,protease	Streptococcus_phage(33.33%)	52	NA	NA
WP_000448934.1|964987_965977_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|966271_966667_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|967037_967757_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000082731.1|968910_970719_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|971178_971985_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214075.1|972007_972373_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|972476_973070_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|973255_973603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|973619_974255_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|974271_975081_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|975077_975932_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|975952_977338_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|977347_979192_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_047339357.1|979469_980240_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|980434_981520_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570699.1|981861_983430_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|983571_984330_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|984523_985033_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154222.1|985145_986336_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|986313_987489_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|987921_989403_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|989386_989647_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049959.1|989646_991209_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|991510_992314_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_000455278.1|992532_994857_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|994873_996232_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|996370_997882_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|998368_998938_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|999147_999366_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|999446_1000433_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1000631_1000808_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1000822_1001425_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1002341_1002443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1002452_1002725_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1002768_1004733_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1004735_1005056_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|1005052_1005694_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795544.1|1005781_1006072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410720.1|1006351_1006639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719184.1|1006644_1008126_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1008214_1008571_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1009047_1010007_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1010052_1010184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1010247_1010463_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620953.1|1010627_1011179_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1011230_1012169_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190626.1|1012350_1013712_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526687.1|1013698_1015372_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150195.1|1015358_1016162_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1016154_1016976_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|1017214_1017544_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088780.1|1017581_1018763_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 5
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	1038749	1047222	2839253		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1038749_1039232_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1039218_1040343_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1040346_1041051_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1041050_1041314_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1041315_1041987_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1041979_1044169_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1044147_1045632_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1045624_1046653_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1046655_1047222_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	1489220	1577166	2839253	tail,protease,head,tRNA,plate,portal,integrase,capsid,terminase,holin	Staphylococcus_phage(83.33%)	107	1525584:1525604	1571477:1571497
WP_000858789.1|1489220_1490513_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1490834_1493528_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1493551_1494523_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1494509_1495712_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1495716_1496859_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1497099_1497417_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1497753_1498434_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1498505_1499093_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1499082_1499658_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1499671_1500916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1500922_1502221_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1502230_1503295_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1503320_1504487_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1504872_1505073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1505281_1505731_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1505822_1506782_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1506783_1507509_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1507511_1508084_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1508514_1508787_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1508957_1509956_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165535.1|1509972_1511283_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1511504_1512680_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1512936_1513128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1513244_1513361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1513391_1514051_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1514127_1515096_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1515210_1516197_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1516357_1516474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1516598_1518059_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1518211_1519591_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1519580_1520534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1520641_1520890_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1520995_1521541_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1521819_1521939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1522137_1523052_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1523066_1523273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1523265_1524204_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1524261_1525179_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1525269_1525455_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1525584:1525604	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1525703_1526687_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1526682_1527621_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1528010_1529465_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|1529475_1529778_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1529913_1530213_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1530258_1530423_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1530415_1530805_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1530804_1532271_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1532270_1534181_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1534196_1534487_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1534486_1536070_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1536078_1536903_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|1536902_1543103_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1543116_1543275_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1543316_1543667_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1543724_1544180_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1544271_1544913_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1544947_1545343_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1545343_1545745_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1545741_1546074_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1546085_1546364_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1546432_1547596_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1547607_1548381_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|1548364_1549603_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|1549607_1551299_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1551288_1551594_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1551720_1552035_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1552191_1552629_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|1552641_1554009_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|1553989_1554280_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1554413_1554512_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1554620_1557068_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1557355_1557556_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1557623_1557776_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|1557772_1558159_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1558151_1558388_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1558380_1558584_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1558580_1558787_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1558823_1559360_-	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1559352_1559601_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1559615_1559858_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1559872_1560073_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1560075_1560333_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1560332_1560734_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1560733_1560919_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1560931_1562884_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1562951_1563509_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1563534_1564701_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1564697_1565060_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1565073_1565334_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1565338_1565641_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1565633_1565951_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|1566216_1566480_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1566504_1566720_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|1566766_1567006_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001001356.1|1567002_1567179_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001115060.1|1567262_1567454_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1567614_1567944_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_047339371.1|1567956_1568418_+	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	98.0	1.4e-84
WP_000755722.1|1568435_1568870_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|1568898_1569294_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1569383_1569530_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1569526_1570141_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1570266_1571472_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001566047.1|1571514_1573542_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	6.9e-115
1571477:1571497	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_001548912.1|1573534_1574464_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1574708_1576460_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_000064078.1|1576440_1577166_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 7
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	1632292	1640604	2839253	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1632292_1633078_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1633203_1634094_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1634103_1635450_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1635563_1636664_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1636666_1637344_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1637474_1638581_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1638804_1640604_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 8
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	1709742	1718785	2839253	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1709742_1710261_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1710282_1712556_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1712758_1715038_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1715312_1715573_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1715591_1716731_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1716753_1717779_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1717780_1718785_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	1844247	1923579	2839253	tRNA,transposase,protease	Staphylococcus_phage(96.55%)	74	NA	NA
WP_001050548.1|1844247_1850808_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1851133_1851445_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1851466_1853884_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1854171_1855353_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1855462_1856416_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1856412_1856976_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1857095_1857497_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1859075_1859903_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1859905_1860025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1860136_1861138_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1861259_1861724_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1861736_1862918_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1862928_1863561_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1863567_1864611_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_047339377.1|1865091_1866594_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1867116_1867431_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1867430_1868723_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1868740_1869136_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1869430_1870285_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1870560_1870785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1870983_1871454_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1871566_1872010_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1871996_1872440_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1872735_1873371_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1873810_1874524_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1874783_1875086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1875341_1875707_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1875703_1876057_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1878139_1878973_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1879184_1880093_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_047339378.1|1880217_1881411_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	5.7e-218
WP_000109906.1|1881781_1883374_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_002868962.1|1884369_1885116_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1885120_1885594_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1885659_1885917_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1885913_1886915_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1886919_1888398_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1888556_1889012_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1889314_1889965_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1890045_1891041_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1891116_1891743_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1891783_1892128_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1892225_1892777_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1892994_1893636_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1893749_1893935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1893936_1894113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1894123_1894507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1895110_1895254_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1895456_1895552_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1895674_1895776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1896123_1896501_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1897021_1901134_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1901983_1903183_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1903175_1904732_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1904895_1905030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1905094_1905814_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1905964_1906681_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1906782_1906890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1906838_1907558_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1907678_1908398_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1908455_1909178_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1909302_1910010_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1910973_1911540_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1912013_1912712_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1912708_1913470_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1913466_1914159_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_047339379.1|1914181_1915555_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	99.8	8.4e-258
WP_000504439.1|1915564_1916083_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1916098_1917343_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1917335_1920329_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1920393_1920537_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1921273_1921417_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1921658_1922642_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1922643_1923579_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 10
NZ_CP007674	Staphylococcus aureus strain CA15 chromosome, complete genome	2839253	2021164	2108811	2839253	tail,protease,head,portal,integrase,capsid,terminase,holin	Staphylococcus_phage(92.21%)	111	2069997:2070014	2094928:2094945
WP_000827748.1|2021164_2022331_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2022361_2022688_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2022979_2023153_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|2023133_2023736_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2024006_2024828_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2024820_2026290_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2026473_2027550_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2027569_2028364_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2028435_2028543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2028553_2030116_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2030320_2031418_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2031789_2032350_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2032402_2033332_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2033526_2033700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2033751_2035131_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2035250_2036279_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2036548_2036950_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2037522_2037696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2038146_2039187_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2039243_2040086_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2040082_2040640_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2040699_2041224_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2041344_2041908_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2041973_2042714_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2042713_2043586_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2043582_2044263_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2044263_2045160_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_047339383.1|2045156_2045537_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2045800_2045977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2046219_2046318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2046517_2047804_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|2048428_2050183_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2051140_2051320_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2051630_2051891_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2051943_2052294_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2052978_2053428_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|2054507_2054999_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2055189_2055945_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2055956_2056211_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2056262_2056370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2056422_2056599_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_047339384.1|2056748_2057045_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	99.0	6.4e-46
WP_001040261.1|2057102_2057390_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2057436_2057589_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2057578_2061364_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567394.1|2061379_2062864_-|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001549167.1|2067447_2067585_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096354.1|2067635_2067986_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2068035_2068275_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2068301_2068946_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2068949_2069354_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2069350_2069755_-	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2069751_2070114_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2069997:2070014	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2070097_2070382_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2070371_2070656_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2070675_2071821_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2071844_2072582_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2072565_2073753_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2073768_2075430_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2075426_2075771_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2075900_2076200_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2076431_2076848_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2076875_2077076_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2077075_2077225_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2077221_2077608_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2077604_2077811_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2077807_2078053_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2078089_2078623_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2078615_2078858_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2078847_2079084_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2079076_2079448_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2079456_2079699_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2079702_2080071_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2080083_2080488_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2080496_2080715_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2080721_2081615_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934753.1|2081644_2082115_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_071665632.1|2082115_2082733_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2082813_2083734_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2083735_2085679_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2085687_2085951_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2085959_2086220_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2086259_2086520_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2086614_2086776_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120197.1|2086772_2087093_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2087151_2087382_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001001356.1|2087378_2087555_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001148642.1|2087570_2088323_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|2088373_2088703_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2088691_2088907_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2088922_2089186_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2089182_2089356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2089318_2090032_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2090047_2090980_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2090985_2091327_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2091530_2091713_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_047339402.1|2091790_2092504_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	99.6	1.1e-128
WP_000857198.1|2092694_2093732_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000595324.1|2094850_2095867_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2094928:2094945	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2095888_2096944_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|2097378_2098602_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|2098973_2099819_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2099880_2100792_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2100952_2102260_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2103112_2103556_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2103720_2104098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2104415_2105006_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_000128898.1|2105002_2105215_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_000240645.1|2105916_2107533_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2107608_2107893_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2108067_2108811_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
