assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001020185.2_ASM102018v2	NZ_CP011535	Streptococcus pyogenes strain M28PF1 chromosome, complete genome	1	606499-606661	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-C,Type I-U, Type I-U?	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-C,TypeI-U,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|NZ_CP011535.2_594964_595528_+,NA|174aa|down_4|NZ_CP011535.2_610700_611222_-,NA|64aa|down_7|NZ_CP011535.2_612781_612973_+	NA|132aa|up_9|NZ_CP011535.2_593967_594363_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|188aa|up_8|NZ_CP011535.2_594964_595528_+	NA	NA|883aa|up_7|NZ_CP011535.2_595529_598178_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|NZ_CP011535.2_598331_600740_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_CP011535.2_600872_601601_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_CP011535.2_601600_603496_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|NZ_CP011535.2_603500_604349_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|NZ_CP011535.2_604350_605025_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_CP011535.2_605021_606047_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP011535.2_606057_606351_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|NZ_CP011535.2_606821_607532_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|NZ_CP011535.2_607544_608168_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|NZ_CP011535.2_608210_609317_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|385aa|down_3|NZ_CP011535.2_609427_610582_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|174aa|down_4|NZ_CP011535.2_610700_611222_-	NA	NA|127aa|down_5|NZ_CP011535.2_611232_611613_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|120aa|down_6|NZ_CP011535.2_611626_611986_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|64aa|down_7|NZ_CP011535.2_612781_612973_+	NA	NA|243aa|down_8|NZ_CP011535.2_612983_613712_+	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|67aa|down_9|NZ_CP011535.2_613890_614091_-	pfam13619, KTSC, KTSC domain
GCF_001020185.2_ASM102018v2	NZ_CP011535	Streptococcus pyogenes strain M28PF1 chromosome, complete genome	2	1100792-1101091	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-A,Type II-B,Type II-C	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	4,4,3	4	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA,NA|214aa|down_8|NZ_CP011535.2_1110954_1111596_-	NA|263aa|up_9|NZ_CP011535.2_1088982_1089771_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|550aa|up_8|NZ_CP011535.2_1089774_1091424_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_7|NZ_CP011535.2_1091559_1092387_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_6|NZ_CP011535.2_1092383_1093193_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_5|NZ_CP011535.2_1093209_1093701_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_4|NZ_CP011535.2_1093719_1094145_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_3|NZ_CP011535.2_1094351_1095371_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_2|NZ_CP011535.2_1095500_1095938_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|611aa|up_1|NZ_CP011535.2_1097508_1099341_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|378aa|up_0|NZ_CP011535.2_1099509_1100643_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|NZ_CP011535.2_1101193_1101856_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP011535.2_1101845_1102187_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP011535.2_1102183_1103053_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|NZ_CP011535.2_1103052_1107159_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|NZ_CP011535.2_1107603_1108236_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_CP011535.2_1108235_1109000_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_CP011535.2_1108999_1109752_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_CP011535.2_1109761_1110892_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NZ_CP011535.2_1110954_1111596_-	NA	NA|452aa|down_9|NZ_CP011535.2_1111719_1113075_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_001020185.2_ASM102018v2	NZ_CP011535	Streptococcus pyogenes strain M28PF1 chromosome, complete genome	3	1854930-1855026	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|NZ_CP011535.2_1850035_1850209_-,NA|538aa|up_8|NZ_CP011535.2_1850495_1852109_-,NA|174aa|up_7|NZ_CP011535.2_1852098_1852620_-,NA|123aa|up_6|NZ_CP011535.2_1852629_1852998_-,NA|64aa|up_5|NZ_CP011535.2_1852906_1853098_-,NA|111aa|up_4|NZ_CP011535.2_1853097_1853430_-,NA|61aa|up_3|NZ_CP011535.2_1853441_1853624_-,NA|81aa|up_2|NZ_CP011535.2_1853844_1854087_-,NA	NA|58aa|up_9|NZ_CP011535.2_1850035_1850209_-	NA	NA|538aa|up_8|NZ_CP011535.2_1850495_1852109_-	NA	NA|174aa|up_7|NZ_CP011535.2_1852098_1852620_-	NA	NA|123aa|up_6|NZ_CP011535.2_1852629_1852998_-	NA	NA|64aa|up_5|NZ_CP011535.2_1852906_1853098_-	NA	NA|111aa|up_4|NZ_CP011535.2_1853097_1853430_-	NA	NA|61aa|up_3|NZ_CP011535.2_1853441_1853624_-	NA	NA|81aa|up_2|NZ_CP011535.2_1853844_1854087_-	NA	NA|189aa|up_1|NZ_CP011535.2_1854143_1854710_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|NZ_CP011535.2_1854725_1854914_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NZ_CP011535.2_1855082_1855526_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|NZ_CP011535.2_1855705_1856869_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|NZ_CP011535.2_1857025_1857637_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|NZ_CP011535.2_1858366_1858639_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|454aa|down_4|NZ_CP011535.2_1858655_1860017_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|NZ_CP011535.2_1860052_1860505_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|NZ_CP011535.2_1860501_1862478_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|NZ_CP011535.2_1862567_1864466_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|NZ_CP011535.2_1864589_1864907_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|NZ_CP011535.2_1865682_1866804_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
