The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	70	25320	2877716	integrase	Staphylococcus_phage(80.49%)	42	3395:3411	30451:30467
WP_168174520.1|70_217_-	hypothetical protein	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	2.5e-19
WP_078065111.1|819_2196_-	DEAD/DEAH box helicase	NA	Q4ZCF6	Staphylococcus_virus	99.3	1.9e-262
WP_000665203.1|2176_2467_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_011447017.1|2600_2705_+	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	100.0	9.4e-13
WP_000884857.1|2807_5255_-	hypothetical protein	NA	Q4ZCG0	Staphylococcus_virus	99.9	0.0e+00
3395:3411	attL	TTGTACCAATGAAAATA	NA	NA	NA	NA
WP_000265258.1|5306_5507_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_001825321.1|5574_5742_-	transcriptional activator RinB	NA	A0A2I6PF16	Staphylococcus_phage	100.0	2.1e-22
WP_001125015.1|5729_5930_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195837.1|5904_6093_-	DUF1381 domain-containing protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
WP_000185654.1|6129_6672_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_001065023.1|6676_6913_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000144708.1|6905_7214_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_000979209.1|7210_7558_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695759.1|7554_7956_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
WP_000693987.1|7958_8165_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
WP_015968801.1|8178_8427_-	PVL orf 51-like protein	NA	Q8SDR2	Staphylococcus_virus	100.0	1.8e-41
WP_000235381.1|8435_8636_-	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
WP_000111488.1|8638_8896_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
WP_000113981.1|8895_9297_-	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|9296_9482_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|9494_11447_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|11515_12073_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_047216521.1|12098_13265_-	DUF2800 domain-containing protein	NA	A0A2D1G5B8	Staphylococcus_phage	99.7	1.2e-220
WP_000985976.1|13261_13624_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000174994.1|13638_13962_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285963.1|14040_14202_-	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_001124190.1|14214_14478_-	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001036302.1|14502_14718_-	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001128433.1|14772_15138_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|15106_15352_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000272861.1|15367_15616_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PED6	Staphylococcus_phage	100.0	2.2e-39
WP_001260486.1|15779_16103_+	helix-turn-helix transcriptional regulator	NA	R4WAK9	Staphylococcus_phage	100.0	9.1e-54
WP_000525014.1|16115_16577_+	hypothetical protein	NA	R4WEA5	Staphylococcus_phage	99.3	1.6e-83
WP_047216523.1|16593_17028_+	hypothetical protein	NA	A0A2I6PED5	Staphylococcus_phage	100.0	1.1e-25
WP_000449655.1|17056_17452_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|17541_17688_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191463.1|17684_18299_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	99.5	2.5e-105
WP_000264751.1|18424_19630_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001813515.1|19672_21700_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	99.5	8.1e-116
WP_001557355.1|21692_22619_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987774.1|22862_24614_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
WP_000064078.1|24594_25320_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
30451:30467	attR	TATTTTCATTGGTACAA	NA	NA	NA	NA
>prophage 2
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	160277	169320	2877716	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|160277_160796_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|160817_163091_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|163293_165573_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|165847_166108_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|166126_167266_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|167288_168314_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|168315_169320_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 3
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	292751	354961	2877716	protease,tRNA	Staphylococcus_phage(95.65%)	59	NA	NA
WP_001050566.1|292751_299312_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|299637_299949_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001108730.1|299970_302385_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025069.1|302675_303857_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	2.1e-217
WP_000526539.1|303966_304920_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|304916_305480_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|305602_306004_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|306575_307403_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|307405_307525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|307636_308638_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|308759_309224_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|309236_310418_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|310428_311061_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000384185.1|311067_312099_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|312591_314094_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|314616_314931_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|314930_316223_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|316309_317164_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|317439_317664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|317862_318333_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|318445_318889_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|318875_319319_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|319614_320250_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|320689_321403_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|321662_321965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|322220_322586_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|322582_322936_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|324932_325766_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|325977_326886_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|327007_328204_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|328575_330168_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_012840522.1|330545_331292_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	5.4e-142
WP_000672013.1|331296_331770_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|331835_332093_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|332089_333091_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|333095_334574_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|334732_335188_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|335490_336141_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|336221_337217_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|337291_337918_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|337958_338300_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|338400_338973_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|340327_340423_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|340545_340647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|341722_342952_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001793440.1|342944_344684_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|344664_344799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|344861_345581_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|345682_345790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|345738_346458_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|346578_347298_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|347355_348078_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|348202_348910_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|349873_350455_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_000469591.1|350927_351146_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_000550252.1|351401_351875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543857.1|351879_352671_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|353040_354024_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000473596.1|354025_354961_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 4
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	361161	408941	2877716	portal,head,capsid,terminase,integrase,tail,holin,plate	Staphylococcus_phage(62.16%)	74	365639:365654	409003:409018
WP_001236362.1|361161_361917_-	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
WP_000713847.1|362880_363609_-	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_000821658.1|363643_364363_-	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_010922839.1|364643_365426_-	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
365639:365654	attL	ACGGAGAGTGAGGGAT	NA	NA	NA	NA
WP_000498229.1|365810_366011_-	hypothetical protein	NA	A0A2H4PQS9	Staphylococcus_phage	100.0	3.5e-32
WP_000125170.1|366024_366231_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	100.0	3.4e-30
WP_000382163.1|366927_367128_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|367114_367225_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|367295_367448_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001141519.1|367591_369004_-	CHAP domain-containing protein	NA	A0A2H4PQS4	Staphylococcus_phage	99.6	2.9e-285
WP_000351119.1|368990_369266_-|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_000398872.1|369321_369717_-	hypothetical protein	NA	A0A0F6N3G8	Staphylococcus_phage	100.0	1.2e-68
WP_000276621.1|369722_370961_-|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	99.3	8.5e-209
WP_000524040.1|370973_372848_-	CHAP domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	100.0	0.0e+00
WP_000466784.1|372984_373284_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_001800921.1|373324_373498_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000406972.1|373501_373879_-	DUF2977 domain-containing protein	NA	A0EWU4	Staphylococcus_virus	100.0	5.6e-55
WP_000259626.1|373878_375702_-|plate	phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	96.7	1.4e-287
WP_000323258.1|375701_377600_-	hypothetical protein	NA	A0A2H4JCV8	uncultured_Caudovirales_phage	98.6	0.0e+00
WP_001144701.1|377612_379499_-	peptidase	NA	A7YGW3	Staphylococcus_virus	99.7	0.0e+00
WP_000560198.1|379509_380445_-|tail	phage tail protein	tail	A7YGW1	Staphylococcus_virus	100.0	3.7e-180
WP_000414239.1|380459_383603_-|terminase	terminase	terminase	Q4ZB30	Staphylococcus_virus	99.6	1.5e-305
WP_000204079.1|383605_383947_-	hypothetical protein	NA	W5R8J4	Staphylococcus_phage	100.0	3.5e-56
WP_000141087.1|383967_384462_-	hypothetical protein	NA	A7YGV7	Staphylococcus_virus	100.0	2.5e-87
WP_000046067.1|384523_385084_-	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000270199.1|385070_385508_-	DUF3168 domain-containing protein	NA	A0A0E3T9M9	Staphylococcus_phage	99.3	4.6e-77
WP_001151332.1|385520_385934_-	HK97 gp10 family phage protein	NA	A0A0E3XCY8	Staphylococcus_phage	100.0	1.5e-77
WP_000482989.1|385920_386256_-|head	phage head closure protein	head	A7YGU9	Staphylococcus_virus	99.1	3.0e-60
WP_000991901.1|386248_386563_-|head,tail	phage head-tail adapter protein	head,tail	A7YGU8	Staphylococcus_virus	97.1	2.4e-51
WP_000278800.1|386562_386889_-	hypothetical protein	NA	Q4ZAA2	Staphylococcus_virus	100.0	5.6e-51
WP_000194847.1|386905_387718_-	hypothetical protein	NA	Q4ZAA4	Staphylococcus_virus	99.6	3.1e-143
WP_000366935.1|387734_388325_-	hypothetical protein	NA	A0A0H4IP83	Staphylococcus_phage	83.7	9.4e-81
WP_047211264.1|388422_389403_-|capsid	minor capsid protein	capsid	A0A0E3XC69	Staphylococcus_phage	98.8	1.1e-179
WP_001159672.1|389341_390820_-|portal	phage portal protein	portal	A0A2H4PQK7	Staphylococcus_phage	100.0	7.9e-286
WP_001800917.1|390773_391982_-|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	99.8	2.3e-235
WP_000594082.1|391974_392469_-|terminase	terminase	terminase	R4IH30	Staphylococcus_phage	100.0	1.1e-74
WP_000286968.1|392819_393221_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_047216536.1|393221_393395_-	transcriptional regulator	NA	A0A0H3U4U1	Staphylococcus_phage	98.2	4.9e-22
WP_000383754.1|393391_393757_-	hypothetical protein	NA	A0A0N9BB01	Staphylococcus_phage	97.5	3.6e-59
WP_000608278.1|393771_394008_-	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_001072794.1|394000_394204_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_047216539.1|394200_394407_-	DUF1381 domain-containing protein	NA	Q4ZDP2	Staphylococcus_virus	95.6	2.4e-20
WP_001652276.1|394403_394649_-	hypothetical protein	NA	Q9B0F1	Staphylococcus_virus	93.8	2.9e-28
WP_001061840.1|394685_395219_-	hypothetical protein	NA	Q4ZBS9	Staphylococcus_virus	98.9	5.1e-94
WP_000889681.1|395236_395395_-	hypothetical protein	NA	W5R9K6	Staphylococcus_phage	98.1	2.0e-22
WP_000454994.1|395395_395677_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_000028424.1|395677_395851_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_047216542.1|395840_396092_-	DUF1024 family protein	NA	E0Y3Q8	Staphylococcus_virus	91.6	1.2e-34
WP_047216544.1|396106_396355_-	phage protein	NA	A7TWA8	Staphylococcus_phage	95.1	7.5e-40
WP_047216546.1|396355_396715_-	phage protein	NA	B2ZYW3	Staphylococcus_phage	96.6	2.1e-59
WP_000772916.1|396726_396984_-	helix-turn-helix transcriptional regulator	NA	Q4ZBU1	Staphylococcus_virus	100.0	4.1e-41
WP_047216549.1|396984_397170_-	DUF3113 family protein	NA	Q8SDV9	Staphylococcus_phage	96.7	1.6e-26
WP_000049806.1|397174_397561_-	DUF1064 domain-containing protein	NA	A0A2I6PDA8	Staphylococcus_phage	99.2	4.1e-69
WP_000451862.1|397557_397983_-	DNA N-6-adenine-methyltransferase	NA	Q4ZAC6	Staphylococcus_virus	100.0	8.0e-82
WP_001123690.1|397992_398214_-	DUF3269 family protein	NA	Q4ZA48	Staphylococcus_virus	100.0	1.7e-35
WP_001024405.1|398217_398433_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
WP_001106168.1|398429_399671_-	AAA family ATPase	NA	C8CGZ3	Staphylococcus_phage	100.0	2.6e-229
WP_001132247.1|399667_400024_-	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	97.5	2.2e-61
WP_000504973.1|400023_400830_-	DnaD domain protein	NA	Q8SDW2	Staphylococcus_phage	100.0	2.1e-107
WP_001199418.1|400801_401494_-	hypothetical protein	NA	Q4ZAZ0	Staphylococcus_virus	99.1	5.2e-131
WP_011447037.1|401506_402007_-	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
WP_000137071.1|402090_402870_-	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	100.0	2.5e-142
WP_000999048.1|402870_403407_-	hypothetical protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
WP_001801009.1|403419_403680_-	DUF1108 family protein	NA	Q4ZAD8	Staphylococcus_virus	95.3	9.3e-41
WP_000829611.1|403660_403990_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.4e-33
WP_000048124.1|404082_404244_-	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_000455726.1|404257_404467_-	hypothetical protein	NA	A7YGP3	Staphylococcus_virus	100.0	7.4e-33
WP_025174157.1|404491_405217_-	antirepressor	NA	A0A2H4PQQ3	Staphylococcus_phage	98.8	9.3e-131
WP_001198673.1|405232_405451_-	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_000358224.1|405592_406312_+	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_000705238.1|406381_406549_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000392183.1|406688_407621_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000337827.1|407600_407780_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_000146088.1|407891_408941_+|integrase	site-specific integrase	integrase	A0A2H4JB53	uncultured_Caudovirales_phage	90.3	5.2e-183
409003:409018	attR	ACGGAGAGTGAGGGAT	NA	NA	NA	NA
>prophage 5
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	490684	585998	2877716	portal,tRNA,head,capsid,protease,integrase,tail,holin,terminase	Staphylococcus_phage(84.0%)	110	488580:488604	588284:588308
488580:488604	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000027917.1|490684_492142_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|492143_492446_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|492812_494351_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|494439_495639_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|495651_497655_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|497658_499851_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|499847_500540_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|500711_501014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|501122_502418_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|503277_504444_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|504474_504801_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|505092_505266_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|505246_505849_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|506119_506941_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|506933_508403_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|508586_509663_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|509682_510477_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|510548_510656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|510666_512229_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|512433_513531_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|513899_514460_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|514512_515442_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|515634_515808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021233.1|515859_517239_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|517358_518387_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|518656_519058_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|519630_519804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|520254_521295_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|521351_522194_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|522190_522748_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|522807_523332_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|523452_524016_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|524081_524822_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|524821_525694_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|525690_526371_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|526371_527268_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|527264_527645_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|527902_528079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|528321_528420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|528619_529906_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|530184_530475_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001558588.1|530485_531919_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|532876_533056_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|533366_533627_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|533679_534030_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727645.1|534712_535162_+	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000920042.1|536241_536733_-	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000861040.1|536923_537679_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.2	2.9e-151
WP_000611512.1|537690_537945_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_072482930.1|538156_538333_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	3.8e-22
WP_000750412.1|538441_539215_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|539587_539962_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|540017_540305_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|540350_540503_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582142.1|540495_544278_-	hypothetical protein	NA	A0A1V0E5H3	Staphylococcus_phage	99.6	0.0e+00
WP_000567390.1|544293_545778_-|tail	phage tail protein	tail	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
WP_000504554.1|545774_550319_-|tail	phage tail tape measure protein	tail	A0A075M036	Staphylococcus_phage	98.5	0.0e+00
WP_001096355.1|550563_550914_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|550963_551188_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|551229_551874_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|551874_552282_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|552278_552683_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|552679_553042_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|553025_553310_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|553299_553584_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|553603_554749_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|554772_555510_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|555493_556681_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625095.1|556696_558358_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.5	0.0e+00
WP_000402904.1|558354_558699_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|558828_559128_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|559359_559776_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|559803_560004_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_001005262.1|560003_560654_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_031761843.1|560812_560962_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	1.1e-17
WP_047216556.1|560958_561165_-	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	95.6	3.5e-19
WP_001282074.1|561161_561407_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000185669.1|561443_561980_-	hypothetical protein	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_072498833.1|561979_562165_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.2	1.8e-22
WP_047216651.1|562127_562337_-	DUF1024 family protein	NA	A0A0H3U2T3	Staphylococcus_phage	75.4	1.0e-21
WP_000338530.1|562762_562981_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|562987_563881_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934772.1|563910_564381_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	7.4e-81
WP_072519237.1|564381_565014_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.4e-87
WP_000138473.1|565079_566000_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	99.0	7.3e-165
WP_000700570.1|566001_567945_-	AAA family ATPase	NA	I1W619	Staphylococcus_phage	96.4	0.0e+00
WP_001205732.1|567953_568217_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291506.1|568225_568486_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	96.5	1.9e-41
WP_001801013.1|568506_568794_-	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	3.2e-42
WP_031766022.1|568887_569049_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	98.1	7.2e-20
WP_001120197.1|569045_569366_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000762521.1|569420_569801_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148862.1|569787_569985_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148343.1|570000_570756_-	oxidoreductase	NA	A0A1P8L6G2	Staphylococcus_phage	99.6	4.3e-139
WP_000351243.1|570812_571352_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|571375_571636_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000548576.1|571648_571888_-	helix-turn-helix transcriptional regulator	NA	Q9MBT3	Staphylococcus_prophage	100.0	8.0e-39
WP_000094093.1|572058_572766_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_001049401.1|572777_572924_+	hypothetical protein	NA	U5U441	Staphylococcus_phage	100.0	4.3e-19
WP_000100503.1|572920_573106_+	hypothetical protein	NA	A0A1X9H0K5	Staphylococcus_phage	100.0	1.1e-24
WP_031806878.1|573305_573473_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	6.6e-24
WP_031929590.1|573770_574844_+	Abi family protein	NA	A0A2H4JB40	uncultured_Caudovirales_phage	49.0	9.0e-82
WP_000857188.1|574904_575942_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	99.7	5.9e-179
WP_000595392.1|577060_578077_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|578098_579154_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|579589_580813_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|581256_582564_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|583103_584720_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|584795_585080_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|585254_585998_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
588284:588308	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 6
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	765649	810965	2877716	portal,head,capsid,terminase,protease,integrase,tail,holin,plate	Staphylococcus_phage(79.69%)	64	771545:771560	812732:812747
WP_031771191.1|765649_765841_-	hypothetical protein	NA	Q4ZCJ7	Staphylococcus_virus	98.1	7.5e-24
WP_000675478.1|766085_766922_-	hypothetical protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
WP_000909210.1|767537_768992_-	CHAP domain-containing protein	NA	Q8SDN4	Staphylococcus_virus	99.8	7.5e-289
WP_000339144.1|769002_769305_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000466784.1|769440_769740_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|769785_769950_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|769942_770332_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067148.1|770331_771798_-|plate	BppU family phage baseplate upper protein	plate	Q8SDN8	Staphylococcus_virus	100.0	3.4e-257
771545:771560	attL	AATTTTAAAATACCTT	NA	NA	NA	NA
WP_000429551.1|771797_773708_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179862.1|773723_774014_-	hypothetical protein	NA	Q8SDP0	Staphylococcus_virus	100.0	2.1e-49
WP_000384461.1|774013_775597_-	peptidase	NA	Q8SDP1	Staphylococcus_virus	99.8	1.2e-308
WP_001190533.1|775605_776430_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_047216567.1|776429_782630_-|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	99.3	0.0e+00
WP_000438833.1|782643_782802_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|782843_783194_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169128.1|783251_783707_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|783798_784440_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|784474_784870_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|784870_785272_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|785268_785601_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|785612_785891_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|785959_787123_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|787134_787908_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100665.1|787891_789130_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	100.0	1.2e-234
WP_000153544.1|789134_790826_-|terminase	terminase large subunit	terminase	Q4ZD20	Staphylococcus_virus	100.0	0.0e+00
WP_000778933.1|790815_791121_-|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160683.1|791242_791557_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	100.0	1.9e-56
WP_000513703.1|791713_792151_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
WP_078065111.1|792163_793540_-	DEAD/DEAH box helicase	NA	Q4ZCF6	Staphylococcus_virus	99.3	1.9e-262
WP_000665203.1|793520_793811_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_078104044.1|793944_794049_+	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	97.1	1.4e-11
WP_000884857.1|794151_796599_-	hypothetical protein	NA	Q4ZCG0	Staphylococcus_virus	99.9	0.0e+00
WP_000265258.1|796650_796851_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_001825321.1|796918_797086_-	transcriptional activator RinB	NA	A0A2I6PF16	Staphylococcus_phage	100.0	2.1e-22
WP_001125015.1|797073_797274_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195837.1|797248_797437_-	DUF1381 domain-containing protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
WP_000185654.1|797473_798016_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_001065023.1|798020_798257_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000144708.1|798249_798558_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_000979209.1|798554_798902_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695756.1|798898_799303_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_060474161.1|799316_799565_-	hypothetical protein	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.2e-40
WP_047216569.1|799564_799819_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	97.6	2.6e-40
WP_047216571.1|799818_800436_-	phage protein	NA	A0A0H3U4U9	Staphylococcus_phage	100.0	1.6e-83
WP_031768172.1|800436_800622_-	DUF3113 family protein	NA	A0A1X9H053	Staphylococcus_phage	96.7	1.6e-26
WP_000152769.1|800621_800777_-	hypothetical protein	NA	A0A2I6PDP0	Staphylococcus_phage	94.1	3.5e-19
WP_078098077.1|800788_802741_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	99.7	0.0e+00
WP_000645042.1|802809_803367_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_031879932.1|803392_804559_-	DUF2800 domain-containing protein	NA	R4WAL0	Staphylococcus_phage	99.0	1.1e-218
WP_047216578.1|804555_804918_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	97.5	9.2e-55
WP_000174994.1|804932_805256_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285963.1|805334_805496_-	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_001124190.1|805508_805772_-	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_031808254.1|805796_806012_-	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	97.2	1.4e-31
WP_001128433.1|806066_806432_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|806400_806646_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000333485.1|806665_806890_-	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	100.0	2.7e-36
WP_001089477.1|807051_807432_+	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	99.2	1.5e-63
WP_047216581.1|807453_807912_+	toxin	NA	B2ZYU2	Staphylococcus_phage	98.0	2.3e-82
WP_047216584.1|807928_808363_+	hypothetical protein	NA	A0A2D1G561	Staphylococcus_phage	99.3	1.4e-25
WP_000449655.1|808391_808787_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|808876_809023_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191463.1|809019_809634_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	99.5	2.5e-105
WP_000264751.1|809759_810965_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
812732:812747	attR	AATTTTAAAATACCTT	NA	NA	NA	NA
>prophage 7
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	1740833	1754556	2877716	integrase,coat,terminase	Staphylococcus_phage(88.89%)	22	1733925:1733940	1755722:1755737
1733925:1733940	attL	ATTTTCAATATCTAAT	NA	NA	NA	NA
WP_001052484.1|1740833_1741025_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
WP_001261460.1|1741268_1741565_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|1741585_1742089_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|1742140_1742383_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000715303.1|1742498_1743605_-	Abi family protein	NA	X2L062	Streptococcus_phage	22.6	2.6e-07
WP_000270133.1|1743785_1744997_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.0	4.3e-221
WP_000668213.1|1745452_1746148_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	62.5	2.3e-09
WP_000794656.1|1746291_1746504_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	61.4	2.6e-17
WP_000091734.1|1746504_1746777_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	92.2	3.9e-42
WP_031824147.1|1746788_1746935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|1746927_1747137_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103945.1|1747139_1747463_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.6e-20
WP_001002724.1|1747527_1748397_+	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	95.8	2.6e-164
WP_000447455.1|1748410_1750120_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	99.5	0.0e+00
WP_000356939.1|1750432_1750813_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	99.2	2.6e-68
WP_001019767.1|1750809_1751451_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	5.5e-111
WP_001190615.1|1751900_1752242_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846280.1|1752253_1752832_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_000536904.1|1752849_1753068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771378.1|1753118_1753646_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	3.5e-87
WP_045181470.1|1753777_1753990_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_001293074.1|1753986_1754556_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
1755722:1755737	attR	ATTAGATATTGAAAAT	NA	NA	NA	NA
>prophage 8
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	2103076	2110897	2877716		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|2103076_2104132_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|2104131_2104818_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2104792_2105266_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|2105608_2106049_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|2106328_2106913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|2107011_2107725_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|2107728_2108148_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|2108149_2108818_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|2109168_2109762_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|2109745_2110897_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 9
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	2122868	2137511	2877716		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|2122868_2123927_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|2124265_2124808_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|2125686_2126604_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|2126694_2126796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|2126873_2128379_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|2128721_2129222_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|2129241_2130108_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2130908_2131307_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|2131269_2133375_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|2133492_2134464_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|2134644_2134800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|2134838_2135810_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|2135796_2136753_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|2136749_2137511_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 10
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	2310545	2364079	2877716	transposase,protease,tRNA,bacteriocin	Streptococcus_phage(33.33%)	54	NA	NA
WP_000448934.1|2310545_2311535_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|2311828_2312224_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001557163.1|2312428_2313748_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_001217726.1|2314114_2314834_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959282.1|2314954_2315941_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|2315988_2317797_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|2318256_2319063_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|2319085_2319451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224619.1|2319554_2320148_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242103.1|2320333_2320681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|2320697_2321333_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|2321349_2322159_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669923.1|2322155_2323010_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|2323030_2324416_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|2324425_2326270_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|2326547_2327318_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|2327514_2328600_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570687.1|2328941_2330510_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288675.1|2330654_2331413_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|2331606_2332116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001795273.1|2332228_2333437_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258645.1|2333396_2334572_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|2335004_2336489_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|2336469_2336730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049950.1|2336729_2338292_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|2338593_2339397_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001795272.1|2339615_2341940_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|2341956_2343315_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414165.1|2343453_2344965_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|2345451_2346021_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|2346230_2346449_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|2346529_2347516_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|2347714_2347891_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|2347905_2348508_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031763719.1|2349423_2349525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|2349534_2349807_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870829.1|2349850_2351815_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668627.1|2351817_2352138_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571167.1|2352134_2352776_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_001795266.1|2352863_2353154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792054.1|2353294_2353432_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|2353520_2353877_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|2354364_2355324_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|2355369_2355501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001788574.1|2355564_2355855_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_000620949.1|2355944_2356496_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|2356547_2357486_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_001791731.1|2357636_2357741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001816819.1|2357817_2359029_+	isochorismate synthase	NA	NA	NA	NA	NA
WP_000526694.1|2359015_2360689_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150197.1|2360675_2361479_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184945.1|2361471_2362293_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284458.1|2362530_2362860_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089094.1|2362897_2364079_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 11
NZ_CP026074	Staphylococcus aureus strain FDAARGOS_47 chromosome, complete genome	2877716	2384117	2392590	2877716		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|2384117_2384600_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|2384586_2385711_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174045.1|2385714_2386419_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	1.6e-47
WP_000848350.1|2386418_2386682_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|2386683_2387355_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032741.1|2387347_2389537_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000483720.1|2389515_2391000_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|2390992_2392021_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|2392023_2392590_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
