assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	1	338605-338689	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TCTATGTTGGGGCCCACCCCAACTTGCAT	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|33aa|up_4|NZ_CP026073.1_334180_334279_+,NA	NA|165aa|up_9|NZ_CP026073.1_329197_329692_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP026073.1_329814_330762_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP026073.1_330849_332052_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP026073.1_332297_332798_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP026073.1_332938_334057_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|33aa|up_4|NZ_CP026073.1_334180_334279_+	NA	NA|352aa|up_3|NZ_CP026073.1_334372_335428_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP026073.1_335602_336292_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP026073.1_336596_337010_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP026073.1_337214_338513_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP026073.1_338966_339908_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP026073.1_339928_343126_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP026073.1_343575_344805_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP026073.1_344999_345857_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP026073.1_345856_346801_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP026073.1_347069_348038_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP026073.1_348059_349817_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP026073.1_350164_351526_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP026073.1_351873_352995_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP026073.1_353043_354312_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	2	424412-424564	2,1	CRISPRCasFinder,PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AAGTTGGGGACGGGGCCCCAACACAGA,TGCAAGTTGGGGACGGGGCCCCAACACAGA--------GAAATTCG	27,46	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|43aa|up_8|NZ_CP026073.1_417153_417282_+,NA|49aa|up_3|NZ_CP026073.1_420318_420465_+,NA	NA|589aa|up_9|NZ_CP026073.1_415054_416821_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_8|NZ_CP026073.1_417153_417282_+	NA	NA|258aa|up_7|NZ_CP026073.1_417281_418055_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|NZ_CP026073.1_418215_419490_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|NZ_CP026073.1_419574_419997_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP026073.1_420096_420279_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP026073.1_420318_420465_+	NA	NA|338aa|up_2|NZ_CP026073.1_420701_421715_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP026073.1_422026_423169_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP026073.1_423169_424288_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP026073.1_424868_425537_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP026073.1_425538_428016_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP026073.1_428358_430989_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP026073.1_431051_431312_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP026073.1_431315_431744_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP026073.1_431758_432067_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP026073.1_432351_432990_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP026073.1_432992_433916_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP026073.1_433927_435196_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP026073.1_435195_435819_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	3	458833-458918	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTGGG	28	1	9	458861-458890|458861-458890|458861-458890|458861-458890|458861-458890|458861-458890|458861-458890|458861-458890|458861-458890	NZ_CP026073.1_2570472-2570443|NZ_CP026073.1_130277-130306|NZ_CP026073.1_130336-130365|NZ_CP026073.1_682419-682448|NZ_CP026073.1_1055178-1055207|NZ_CP026073.1_1350311-1350282|NZ_CP026073.1_1467478-1467449|NZ_CP026073.1_1981564-1981535|NZ_CP026073.1_2331923-2331952	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|190aa|up_9|NZ_CP026073.1_449403_449973_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP026073.1_449962_450547_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP026073.1_450547_450901_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP026073.1_450903_451620_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP026073.1_451659_452346_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP026073.1_452437_452899_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP026073.1_452957_455105_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP026073.1_455161_456136_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP026073.1_456180_456432_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP026073.1_456777_458601_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP026073.1_459224_460349_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP026073.1_460449_461427_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP026073.1_461458_462085_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP026073.1_462153_463986_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP026073.1_464121_465261_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP026073.1_465264_466203_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP026073.1_466204_466957_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP026073.1_466963_468310_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP026073.1_468602_468779_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP026073.1_469022_469706_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	4	984499-984750	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TNTNGGNNCCNCNCCAACTTGCATTGT	27	1	1	984695-984723	NZ_CP026073.1_16963-16935	NA	4	4	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|75aa|up_4|NZ_CP026073.1_980871_981096_-,NA|49aa|up_3|NZ_CP026073.1_981052_981199_-,NA|78aa|up_1|NZ_CP026073.1_983307_983541_+,NA|62aa|up_0|NZ_CP026073.1_984159_984345_+,NA|169aa|down_2|NZ_CP026073.1_986369_986876_-,NA|34aa|down_4|NZ_CP026073.1_987895_987997_+,NA|56aa|down_6|NZ_CP026073.1_988825_988993_-	NA|311aa|up_9|NZ_CP026073.1_975551_976484_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP026073.1_976506_977508_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP026073.1_977945_978671_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP026073.1_978765_979491_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP026073.1_979598_980315_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP026073.1_980871_981096_-	NA	NA|49aa|up_3|NZ_CP026073.1_981052_981199_-	NA	NA|320aa|up_2|NZ_CP026073.1_981871_982831_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP026073.1_983307_983541_+	NA	NA|62aa|up_0|NZ_CP026073.1_984159_984345_+	NA	NA|117aa|down_0|NZ_CP026073.1_985109_985460_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP026073.1_985613_986111_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP026073.1_986369_986876_-	NA	NA|133aa|down_3|NZ_CP026073.1_987546_987945_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|34aa|down_4|NZ_CP026073.1_987895_987997_+	NA	NA|106aa|down_5|NZ_CP026073.1_988314_988632_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP026073.1_988825_988993_-	NA	NA|168aa|down_7|NZ_CP026073.1_989120_989624_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP026073.1_989616_990204_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP026073.1_990215_991016_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	5	1198509-1198590	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP026073.1_1182552_1183455_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP026073.1_1183620_1187274_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP026073.1_1187274_1190751_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP026073.1_1190910_1191486_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP026073.1_1191501_1192026_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP026073.1_1192030_1192606_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP026073.1_1192930_1194262_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP026073.1_1194612_1195818_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP026073.1_1195807_1197187_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP026073.1_1197428_1198358_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP026073.1_1198747_1199992_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP026073.1_1200100_1201291_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP026073.1_1201598_1202726_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP026073.1_1203087_1203465_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP026073.1_1203879_1204473_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP026073.1_1204536_1204920_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP026073.1_1205050_1207456_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP026073.1_1207448_1207877_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP026073.1_1207888_1208218_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP026073.1_1208210_1209707_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	6	1247332-1247413	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1247356-1247389	NZ_CP026073.1_682415-682448	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|38aa|down_1|NZ_CP026073.1_1248396_1248510_-	NA|417aa|up_9|NZ_CP026073.1_1237816_1239067_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP026073.1_1239172_1240480_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP026073.1_1240577_1241339_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP026073.1_1241666_1242518_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP026073.1_1242750_1242945_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP026073.1_1243298_1244120_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP026073.1_1244137_1244833_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP026073.1_1244825_1245851_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP026073.1_1246100_1246397_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP026073.1_1246389_1246776_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP026073.1_1247516_1248395_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP026073.1_1248396_1248510_-	NA	NA|127aa|down_2|NZ_CP026073.1_1248573_1248954_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP026073.1_1249111_1249468_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP026073.1_1249611_1249932_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP026073.1_1250081_1250621_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP026073.1_1250703_1251420_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP026073.1_1251567_1251990_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP026073.1_1252388_1252883_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP026073.1_1253037_1253655_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	7	1309216-1309296	6	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	12	1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270|1309242-1309270	NZ_CP026073.1_281330-281302|NZ_CP026073.1_639499-639471|NZ_CP026073.1_896668-896640|NZ_CP026073.1_1755185-1755157|NZ_CP026073.1_458820-458848|NZ_CP026073.1_980525-980497|NZ_CP026073.1_980636-980608|NZ_CP026073.1_1198603-1198575|NZ_CP026073.1_1247319-1247347|NZ_CP026073.1_1303808-1303836|NZ_CP026073.1_1848155-1848183|NZ_CP026073.1_1956289-1956261	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|36aa|down_5|NZ_CP026073.1_1316737_1316845_-,NA|35aa|down_7|NZ_CP026073.1_1318277_1318382_-	NA|301aa|up_9|NZ_CP026073.1_1298231_1299134_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP026073.1_1299376_1299964_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP026073.1_1300536_1301481_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP026073.1_1301591_1302587_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP026073.1_1302583_1303495_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP026073.1_1304259_1305195_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP026073.1_1305261_1306701_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP026073.1_1306708_1307194_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP026073.1_1307201_1308041_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP026073.1_1308046_1308979_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP026073.1_1309585_1312432_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP026073.1_1312439_1314425_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP026073.1_1314693_1314930_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP026073.1_1314926_1315577_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP026073.1_1315750_1316590_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP026073.1_1316737_1316845_-	NA	NA|370aa|down_6|NZ_CP026073.1_1316998_1318109_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP026073.1_1318277_1318382_-	NA	NA|844aa|down_8|NZ_CP026073.1_1318423_1320955_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP026073.1_1321368_1321941_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	8	1832802-1832992	2	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCAC	24	3	31	1832826-1832857|1832826-1832857|1832826-1832857|1832826-1832857|1832826-1832857|1832826-1832857|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832882-1832912|1832937-1832968|1832937-1832968|1832937-1832968|1832937-1832968|1832937-1832968	NZ_CP026073.1_896533-896564|NZ_CP026073.1_896589-896620|NZ_CP026073.1_980557-980588|NZ_CP026073.1_444226-444257|NZ_CP026073.1_2166677-2166646|NZ_CP026073.1_458786-458755|NZ_CP026073.1_130434-130404|NZ_CP026073.1_639534-639564|NZ_CP026073.1_639592-639622|NZ_CP026073.1_682342-682312|NZ_CP026073.1_772236-772266|NZ_CP026073.1_1081212-1081182|NZ_CP026073.1_1081328-1081298|NZ_CP026073.1_1198580-1198610|NZ_CP026073.1_1247342-1247312|NZ_CP026073.1_1303773-1303743|NZ_CP026073.1_1956266-1956296|NZ_CP026073.1_1981582-1981612|NZ_CP026073.1_2570547-2570577|NZ_CP026073.1_424583-424553|NZ_CP026073.1_639476-639506|NZ_CP026073.1_1179035-1179005|NZ_CP026073.1_1848178-1848148|NZ_CP026073.1_2331848-2331818|NZ_CP026073.1_980613-980643|NZ_CP026073.1_1303831-1303801|NZ_CP026073.1_896533-896564|NZ_CP026073.1_896589-896620|NZ_CP026073.1_980557-980588|NZ_CP026073.1_444226-444257|NZ_CP026073.1_2166677-2166646	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|131aa|up_6|NZ_CP026073.1_1827250_1827643_-,NA|45aa|up_1|NZ_CP026073.1_1831593_1831728_-,NA	NA|317aa|up_9|NZ_CP026073.1_1823244_1824195_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|331aa|up_8|NZ_CP026073.1_1824520_1825513_-	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|459aa|up_7|NZ_CP026073.1_1825746_1827123_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|131aa|up_6|NZ_CP026073.1_1827250_1827643_-	NA	NA|333aa|up_5|NZ_CP026073.1_1828023_1829022_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|294aa|up_4|NZ_CP026073.1_1829253_1830135_+	pfam06800, Sugar_transport, Sugar transport protein	NA|135aa|up_3|NZ_CP026073.1_1830149_1830554_+	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|305aa|up_2|NZ_CP026073.1_1830581_1831496_+	TIGR02152, Putative_ribokinase, ribokinase	NA|45aa|up_1|NZ_CP026073.1_1831593_1831728_-	NA	NA|254aa|up_0|NZ_CP026073.1_1831746_1832508_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|479aa|down_0|NZ_CP026073.1_1833055_1834492_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|264aa|down_1|NZ_CP026073.1_1834507_1835299_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|235aa|down_2|NZ_CP026073.1_1835447_1836152_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|234aa|down_3|NZ_CP026073.1_1836259_1836961_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|down_4|NZ_CP026073.1_1836953_1837397_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|down_5|NZ_CP026073.1_1837509_1838250_-	PRK14084, PRK14084, DNA-binding response regulator	NA|580aa|down_6|NZ_CP026073.1_1838252_1839992_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|down_7|NZ_CP026073.1_1840250_1840925_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|down_8|NZ_CP026073.1_1841068_1842790_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|down_9|NZ_CP026073.1_1842822_1844511_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	9	1956192-1956276	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	3	1956218-1956250|1956218-1956250|1956218-1956250	NZ_CP026073.1_130365-130333|NZ_CP026073.1_682448-682416|NZ_CP026073.1_1055207-1055175	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|68aa|up_0|NZ_CP026073.1_1955926_1956130_+,NA	NA|2392aa|up_9|NZ_CP026073.1_1940331_1947507_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|417aa|up_8|NZ_CP026073.1_1947953_1949204_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|342aa|up_7|NZ_CP026073.1_1949589_1950615_-	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|120aa|up_6|NZ_CP026073.1_1950788_1951148_-	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|344aa|up_5|NZ_CP026073.1_1951364_1952396_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|254aa|up_4|NZ_CP026073.1_1952408_1953170_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|325aa|up_3|NZ_CP026073.1_1953166_1954141_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|up_2|NZ_CP026073.1_1954154_1954895_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|171aa|up_1|NZ_CP026073.1_1955236_1955749_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|68aa|up_0|NZ_CP026073.1_1955926_1956130_+	NA	NA|320aa|down_0|NZ_CP026073.1_1956424_1957384_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|496aa|down_1|NZ_CP026073.1_1958029_1959517_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|128aa|down_2|NZ_CP026073.1_1959943_1960327_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|109aa|down_3|NZ_CP026073.1_1960333_1960660_+	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|382aa|down_4|NZ_CP026073.1_1960724_1961870_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_5|NZ_CP026073.1_1961946_1963209_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|296aa|down_6|NZ_CP026073.1_1963262_1964150_-	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|186aa|down_7|NZ_CP026073.1_1964149_1964707_-	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|402aa|down_8|NZ_CP026073.1_1964717_1965923_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|413aa|down_9|NZ_CP026073.1_1965956_1967195_-	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	10	2166518-2166662	2	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGG---CGGGGCCCCAACATAGAAGCTGGCGGAAAG	43	1	19	2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643|2166628-2166643	NZ_CP026073.1_2166663-2166678|NZ_CP026073.1_121011-121026|NZ_CP026073.1_458772-458787|NZ_CP026073.1_682387-682402|NZ_CP026073.1_767837-767852|NZ_CP026073.1_772191-772176|NZ_CP026073.1_896547-896532|NZ_CP026073.1_896603-896588|NZ_CP026073.1_896717-896702|NZ_CP026073.1_980571-980556|NZ_CP026073.1_980684-980669|NZ_CP026073.1_1081257-1081272|NZ_CP026073.1_1247060-1247075|NZ_CP026073.1_1296668-1296683|NZ_CP026073.1_1832784-1832769|NZ_CP026073.1_1848107-1848122|NZ_CP026073.1_1848379-1848394|NZ_CP026073.1_2331893-2331908|NZ_CP026073.1_2570502-2570487	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|60aa|up_1|NZ_CP026073.1_2163477_2163657_+,NA	NA|205aa|up_9|NZ_CP026073.1_2157195_2157810_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP026073.1_2157802_2159053_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP026073.1_2159068_2160082_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP026073.1_2160050_2160629_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP026073.1_2160625_2161204_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP026073.1_2161196_2161901_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP026073.1_2161897_2162656_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP026073.1_2162652_2163285_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP026073.1_2163477_2163657_+	NA	NA|681aa|up_0|NZ_CP026073.1_2164377_2166420_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP026073.1_2166865_2167918_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP026073.1_2167904_2168777_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP026073.1_2168773_2169079_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP026073.1_2169042_2170281_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP026073.1_2170444_2171005_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP026073.1_2171853_2172516_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP026073.1_2172532_2173225_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP026073.1_2173221_2173989_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP026073.1_2174223_2174724_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP026073.1_2174726_2175203_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	11	2298967-2299074	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTGTAAACCGTAGTGTACTTATTATTTATAATAAT	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|163aa|up_7|NZ_CP026073.1_2290468_2290957_+,NA|64aa|down_1|NZ_CP026073.1_2301890_2302082_-,NA|56aa|down_4|NZ_CP026073.1_2304765_2304933_+	NA|604aa|up_9|NZ_CP026073.1_2287354_2289166_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|256aa|up_8|NZ_CP026073.1_2289526_2290294_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|163aa|up_7|NZ_CP026073.1_2290468_2290957_+	NA	NA|498aa|up_6|NZ_CP026073.1_2290949_2292443_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|376aa|up_5|NZ_CP026073.1_2292448_2293576_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|288aa|up_4|NZ_CP026073.1_2293612_2294476_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|503aa|up_3|NZ_CP026073.1_2294487_2295996_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|385aa|up_2|NZ_CP026073.1_2296422_2297577_+	PRK08068, PRK08068, transaminase; Reviewed	NA|333aa|up_1|NZ_CP026073.1_2297599_2298598_+	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|69aa|up_0|NZ_CP026073.1_2298687_2298894_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|803aa|down_0|NZ_CP026073.1_2299242_2301651_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|64aa|down_1|NZ_CP026073.1_2301890_2302082_-	NA	NA|200aa|down_2|NZ_CP026073.1_2302320_2302920_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|515aa|down_3|NZ_CP026073.1_2303109_2304654_+	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|56aa|down_4|NZ_CP026073.1_2304765_2304933_+	NA	NA|183aa|down_5|NZ_CP026073.1_2305008_2305557_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|830aa|down_6|NZ_CP026073.1_2305701_2308191_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|76aa|down_7|NZ_CP026073.1_2308406_2308634_+	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|665aa|down_8|NZ_CP026073.1_2308645_2310640_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|57aa|down_9|NZ_CP026073.1_2310652_2310823_+	pfam12669, P12, Virus attachment protein p12 family
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	12	2437867-2437945	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTTCTACAGACAATGCAAGTTGG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|36aa|up_0|NZ_CP026073.1_2437452_2437560_+,NA|56aa|down_2|NZ_CP026073.1_2441995_2442163_+	NA|693aa|up_9|NZ_CP026073.1_2427275_2429354_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP026073.1_2429491_2430901_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP026073.1_2431186_2431993_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP026073.1_2432055_2432712_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP026073.1_2432824_2433298_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP026073.1_2433420_2434632_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP026073.1_2434813_2435473_-	PHA02562, 46, endonuclease subunit; Provisional	NA|381aa|up_2|NZ_CP026073.1_2435532_2436675_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP026073.1_2436932_2437319_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP026073.1_2437452_2437560_+	NA	NA|588aa|down_0|NZ_CP026073.1_2438243_2440007_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP026073.1_2440031_2441765_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_CP026073.1_2441995_2442163_+	NA	NA|229aa|down_3|NZ_CP026073.1_2442217_2442904_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_CP026073.1_2442881_2444240_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_CP026073.1_2444241_2445249_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_CP026073.1_2445226_2446342_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_CP026073.1_2446352_2447045_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_CP026073.1_2447055_2447523_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_CP026073.1_2447574_2448552_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	13	2604747-2604832	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	1	2604777-2604802	NZ_CP026073.1_980714-980689	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP026073.1_2604850_2605021_-,NA|84aa|down_5|NZ_CP026073.1_2608160_2608412_-,NA|106aa|down_8|NZ_CP026073.1_2613533_2613851_-,NA|55aa|down_9|NZ_CP026073.1_2614095_2614260_-	NA|202aa|up_9|NZ_CP026073.1_2597605_2598211_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP026073.1_2598380_2599385_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP026073.1_2599415_2599922_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP026073.1_2599923_2600418_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP026073.1_2600480_2601740_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP026073.1_2601736_2602222_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP026073.1_2602235_2602682_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP026073.1_2602687_2602921_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP026073.1_2602927_2603527_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP026073.1_2603546_2604569_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP026073.1_2604850_2605021_-	NA	NA|117aa|down_1|NZ_CP026073.1_2605146_2605497_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP026073.1_2605598_2606810_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP026073.1_2606802_2607243_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP026073.1_2607404_2608169_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP026073.1_2608160_2608412_-	NA	NA|422aa|down_6|NZ_CP026073.1_2608800_2610066_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP026073.1_2610182_2613350_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP026073.1_2613533_2613851_-	NA	NA|55aa|down_9|NZ_CP026073.1_2614095_2614260_-	NA
GCF_001019535.2_ASM101953v2	NZ_CP026073	Staphylococcus aureus strain FDAARGOS_42 chromosome, complete genome	14	2716258-2716339	11	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|53aa|up_1|NZ_CP026073.1_2714980_2715139_-,NA|35aa|up_0|NZ_CP026073.1_2715818_2715923_+,NA|364aa|down_0|NZ_CP026073.1_2716355_2717447_-,NA|77aa|down_5|NZ_CP026073.1_2721236_2721467_+	NA|452aa|up_9|NZ_CP026073.1_2695173_2696529_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|up_8|NZ_CP026073.1_2704639_2705746_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP026073.1_2705745_2706180_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP026073.1_2706191_2708324_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP026073.1_2708358_2709897_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP026073.1_2710577_2712383_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP026073.1_2712614_2713397_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP026073.1_2713464_2714322_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP026073.1_2714980_2715139_-	NA	NA|35aa|up_0|NZ_CP026073.1_2715818_2715923_+	NA	NA|364aa|down_0|NZ_CP026073.1_2716355_2717447_-	NA	NA|327aa|down_1|NZ_CP026073.1_2717712_2718693_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP026073.1_2718694_2719015_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP026073.1_2719166_2719832_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP026073.1_2720267_2721206_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP026073.1_2721236_2721467_+	NA	NA|458aa|down_6|NZ_CP026073.1_2722138_2723512_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP026073.1_2723969_2724383_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP026073.1_2724582_2725026_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP026073.1_2725146_2725857_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
