assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	1	318655-318736	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	318679-318712|318679-318712|318679-318712|318679-318712|318679-318712	NZ_CP026958.1_362291-362258|NZ_CP026958.1_2279544-2279511|NZ_CP026958.1_10878-10845|NZ_CP026958.1_1245301-1245268|NZ_CP026958.1_2495626-2495659	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA|87aa|up_9|NZ_CP026958.1_309567_309828_-,NA|61aa|up_5|NZ_CP026958.1_311877_312060_+,NA|114aa|down_6|NZ_CP026958.1_326543_326885_-,NA|193aa|down_9|NZ_CP026958.1_327701_328280_-	NA|87aa|up_9|NZ_CP026958.1_309567_309828_-	NA	NA|81aa|up_8|NZ_CP026958.1_309841_310084_-	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|239aa|up_7|NZ_CP026958.1_310247_310964_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|286aa|up_6|NZ_CP026958.1_310975_311833_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|61aa|up_5|NZ_CP026958.1_311877_312060_+	NA	NA|155aa|up_4|NZ_CP026958.1_312159_312624_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|346aa|up_3|NZ_CP026958.1_312682_313720_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP026958.1_314838_315855_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP026958.1_315876_316932_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|401aa|up_0|NZ_CP026958.1_317367_318570_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP026958.1_318877_320185_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|NZ_CP026958.1_321201_321924_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|NZ_CP026958.1_322092_322893_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|187aa|down_3|NZ_CP026958.1_323679_324240_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|235aa|down_4|NZ_CP026958.1_325118_325823_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_5|NZ_CP026958.1_325977_326547_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|114aa|down_6|NZ_CP026958.1_326543_326885_-	NA	NA|176aa|down_7|NZ_CP026958.1_326887_327415_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_8|NZ_CP026958.1_327465_327684_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|193aa|down_9|NZ_CP026958.1_327701_328280_-	NA
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	2	356557-356887	1	CRT	no	cas3	csa3,DEDDh,cas3,WYL,RT,DinG	Unclear	TTCTACAGNCAATGCNAGTTGGGGTGTGGGCCCCAACA	38	5	36	356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356595-356614|356653-356673|356653-356673|356653-356673|356712-356732|356712-356732|356712-356732|356771-356790|356771-356790|356771-356790|356829-356849|356829-356849|356829-356849|356829-356849|356829-356849|356829-356849|356829-356849	NZ_CP026958.1_69614-69633|NZ_CP026958.1_217522-217503|NZ_CP026958.1_404112-404131|NZ_CP026958.1_528653-528634|NZ_CP026958.1_892980-892961|NZ_CP026958.1_1016224-1016205|NZ_CP026958.1_1972029-1972010|NZ_CP026958.1_2182496-2182477|NZ_CP026958.1_2279517-2279536|NZ_CP026958.1_2491149-2491168|NZ_CP026958.1_2761198-2761179|NZ_CP026958.1_2775697-2775716|NZ_CP026958.1_10851-10870|NZ_CP026958.1_893035-893016|NZ_CP026958.1_893090-893071|NZ_CP026958.1_2086550-2086531|NZ_CP026958.1_2285167-2285186|NZ_CP026958.1_2495653-2495634|NZ_CP026958.1_2541144-2541125|NZ_CP026958.1_2795459-2795440|NZ_CP026958.1_356536-356556|NZ_CP026958.1_318765-318745|NZ_CP026958.1_402975-402955|NZ_CP026958.1_356536-356556|NZ_CP026958.1_318765-318745|NZ_CP026958.1_402975-402955|NZ_CP026958.1_226872-226853|NZ_CP026958.1_1245274-1245293|NZ_CP026958.1_161828-161809|NZ_CP026958.1_216121-216101|NZ_CP026958.1_216180-216160|NZ_CP026958.1_528595-528575|NZ_CP026958.1_1697935-1697955|NZ_CP026958.1_2285109-2285129|NZ_CP026958.1_2491207-2491227|NZ_CP026958.1_2579679-2579659	NA	5	5	Unclear	csa3,DEDDh,cas3,WYL,RT,DinG	NA,NA	NA|254aa|up_9|NZ_CP026958.1_344489_345251_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP026958.1_345372_346563_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP026958.1_346701_347712_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP026958.1_347764_348778_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP026958.1_349702_350332_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP026958.1_351034_351937_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP026958.1_352179_352767_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP026958.1_353330_354275_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP026958.1_354385_355381_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP026958.1_355377_356289_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP026958.1_357233_358169_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP026958.1_358235_359675_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP026958.1_359682_360168_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP026958.1_360175_361015_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP026958.1_361020_361953_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP026958.1_362616_365463_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP026958.1_365470_367456_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP026958.1_367724_367961_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP026958.1_367957_368608_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP026958.1_368781_369621_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	3	362212-362290	2	CRISPRCasFinder	no	cas3	csa3,DEDDh,cas3,WYL,RT,DinG	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	362236-362266|362236-362266|362236-362266	NZ_CP026958.1_893008-892978|NZ_CP026958.1_893063-893033|NZ_CP026958.1_2795606-2795576	NA	1	1	Unclear	csa3,DEDDh,cas3,WYL,RT,DinG	NA,NA|36aa|down_5|NZ_CP026958.1_369768_369876_-,NA|35aa|down_7|NZ_CP026958.1_371308_371413_-	NA|301aa|up_9|NZ_CP026958.1_351034_351937_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP026958.1_352179_352767_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP026958.1_353330_354275_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP026958.1_354385_355381_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP026958.1_355377_356289_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP026958.1_357233_358169_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP026958.1_358235_359675_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP026958.1_359682_360168_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP026958.1_360175_361015_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP026958.1_361020_361953_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP026958.1_362616_365463_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP026958.1_365470_367456_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP026958.1_367724_367961_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP026958.1_367957_368608_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP026958.1_368781_369621_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP026958.1_369768_369876_-	NA	NA|370aa|down_6|NZ_CP026958.1_370029_371140_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP026958.1_371308_371413_-	NA	NA|844aa|down_8|NZ_CP026958.1_371454_373986_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP026958.1_374399_374972_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	4	776318-776420	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA|221aa|up_1|NZ_CP026958.1_774564_775227_+,NA|33aa|down_1|NZ_CP026958.1_778615_778714_-,NA|128aa|down_7|NZ_CP026958.1_784961_785345_+,NA|70aa|down_9|NZ_CP026958.1_786169_786379_+	NA|77aa|up_9|NZ_CP026958.1_766369_766600_+	pfam12645, HTH_16, Helix-turn-helix domain	NA|67aa|up_8|NZ_CP026958.1_767097_767298_+	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|398aa|up_7|NZ_CP026958.1_767324_768518_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|514aa|up_6|NZ_CP026958.1_768585_770127_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP026958.1_770151_771618_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP026958.1_771655_772924_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP026958.1_772923_773502_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP026958.1_774014_774422_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP026958.1_774564_775227_+	NA	NA|319aa|up_0|NZ_CP026958.1_775344_776301_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|440aa|down_0|NZ_CP026958.1_776632_777952_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|33aa|down_1|NZ_CP026958.1_778615_778714_-	NA	NA|463aa|down_2|NZ_CP026958.1_778798_780187_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_3|NZ_CP026958.1_780266_781022_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_4|NZ_CP026958.1_781513_782083_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_5|NZ_CP026958.1_782098_783622_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_6|NZ_CP026958.1_784065_784692_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP026958.1_784961_785345_+	NA	NA|194aa|down_8|NZ_CP026958.1_785410_785992_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP026958.1_786169_786379_+	NA
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	5	1016120-1016204	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1016146-1016178|1016146-1016178	NZ_CP026958.1_2491285-2491253|NZ_CP026958.1_2579601-2579633	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA|68aa|up_0|NZ_CP026958.1_1015854_1016058_+,NA|402aa|down_9|NZ_CP026958.1_1025852_1027058_-	NA|2392aa|up_9|NZ_CP026958.1_1000261_1007437_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|417aa|up_8|NZ_CP026958.1_1007883_1009134_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|342aa|up_7|NZ_CP026958.1_1009519_1010545_-	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|120aa|up_6|NZ_CP026958.1_1010718_1011078_-	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|344aa|up_5|NZ_CP026958.1_1011294_1012326_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|254aa|up_4|NZ_CP026958.1_1012338_1013100_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_3|NZ_CP026958.1_1013096_1014068_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|up_2|NZ_CP026958.1_1014081_1014822_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|171aa|up_1|NZ_CP026958.1_1015163_1015676_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|68aa|up_0|NZ_CP026958.1_1015854_1016058_+	NA	NA|320aa|down_0|NZ_CP026958.1_1016352_1017312_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|496aa|down_1|NZ_CP026958.1_1017958_1019446_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|128aa|down_2|NZ_CP026958.1_1019872_1020256_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|109aa|down_3|NZ_CP026958.1_1020262_1020589_+	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|382aa|down_4|NZ_CP026958.1_1020653_1021799_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_5|NZ_CP026958.1_1021875_1023138_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|296aa|down_6|NZ_CP026958.1_1023191_1024079_-	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|186aa|down_7|NZ_CP026958.1_1024078_1024636_-	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|402aa|down_8|NZ_CP026958.1_1024646_1025852_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|402aa|down_9|NZ_CP026958.1_1025852_1027058_-	NA
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	6	1443810-1443943	1	PILER-CR	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	TATTGAAGAAGATACAA	17	2	2	1443827-1443872|1443890-1443926	NZ_CP026958.1_1440177-1440222|NZ_CP026958.1_1440240-1440276	NA	2	2	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA,NA|78aa|down_5|NZ_CP026958.1_1453780_1454014_+,NA|103aa|down_6|NZ_CP026958.1_1454121_1454430_-,NA|89aa|down_7|NZ_CP026958.1_1454573_1454840_-	NA|204aa|up_9|NZ_CP026958.1_1426192_1426804_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP026958.1_1427350_1428628_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP026958.1_1429104_1430928_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP026958.1_1431066_1431483_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP026958.1_1431713_1432406_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP026958.1_1432570_1433335_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP026958.1_1433487_1434168_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP026958.1_1434191_1435745_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP026958.1_1435861_1437220_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1039aa|up_0|NZ_CP026958.1_1437688_1440805_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|440aa|down_0|NZ_CP026958.1_1444579_1445899_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|289aa|down_1|NZ_CP026958.1_1446071_1446938_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_2|NZ_CP026958.1_1447148_1447892_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_3|NZ_CP026958.1_1448215_1448572_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1116aa|down_4|NZ_CP026958.1_1448876_1452224_+	pfam18483, Bact_lectin, Bacterial lectin	NA|78aa|down_5|NZ_CP026958.1_1453780_1454014_+	NA	NA|103aa|down_6|NZ_CP026958.1_1454121_1454430_-	NA	NA|89aa|down_7|NZ_CP026958.1_1454573_1454840_-	NA	NA|603aa|down_8|NZ_CP026958.1_1455123_1456932_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP026958.1_1457063_1457456_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	7	1520878-1520956	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	7	1520901-1520933|1520901-1520933|1520901-1520933|1520901-1520933|1520901-1520933|1520901-1520933|1520901-1520933	NZ_CP026958.1_349230-349262|NZ_CP026958.1_1972298-1972266|NZ_CP026958.1_349286-349318|NZ_CP026958.1_349342-349374|NZ_CP026958.1_349398-349430|NZ_CP026958.1_349454-349486|NZ_CP026958.1_1912362-1912330	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA|220aa|up_3|NZ_CP026958.1_1517802_1518462_-,NA|36aa|up_0|NZ_CP026958.1_1520451_1520559_+,NA	NA|693aa|up_9|NZ_CP026958.1_1510263_1512342_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP026958.1_1512480_1513890_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP026958.1_1514175_1514982_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP026958.1_1515044_1515701_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP026958.1_1515813_1516287_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP026958.1_1516409_1517621_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP026958.1_1517802_1518462_-	NA	NA|381aa|up_2|NZ_CP026958.1_1518521_1519664_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP026958.1_1519931_1520318_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP026958.1_1520451_1520559_+	NA	NA|588aa|down_0|NZ_CP026958.1_1521261_1523025_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP026958.1_1523049_1524783_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP026958.1_1525235_1525922_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP026958.1_1525899_1527258_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP026958.1_1527259_1528267_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP026958.1_1528244_1529360_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP026958.1_1529370_1530063_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP026958.1_1530073_1530541_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP026958.1_1530592_1531570_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP026958.1_1531571_1532519_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	8	1687113-1687193	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	16	1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168|1687138-1687168	NZ_CP026958.1_349290-349320|NZ_CP026958.1_349346-349376|NZ_CP026958.1_349402-349432|NZ_CP026958.1_349458-349488|NZ_CP026958.1_216176-216146|NZ_CP026958.1_349234-349264|NZ_CP026958.1_528591-528561|NZ_CP026958.1_816676-816646|NZ_CP026958.1_1114660-1114690|NZ_CP026958.1_1697939-1697969|NZ_CP026958.1_1972294-1972264|NZ_CP026958.1_2182550-2182520|NZ_CP026958.1_2285113-2285143|NZ_CP026958.1_2491211-2491241|NZ_CP026958.1_2579675-2579645|NZ_CP026958.1_2775758-2775788	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA,NA|62aa|down_0|NZ_CP026958.1_1687234_1687420_-,NA|84aa|down_5|NZ_CP026958.1_1690559_1690811_-,NA|106aa|down_8|NZ_CP026958.1_1695932_1696250_-,NA|55aa|down_9|NZ_CP026958.1_1696494_1696659_-	NA|202aa|up_9|NZ_CP026958.1_1680005_1680611_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP026958.1_1680780_1681785_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP026958.1_1681815_1682322_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP026958.1_1682323_1682818_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP026958.1_1682880_1684140_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP026958.1_1684136_1684622_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP026958.1_1684635_1685082_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP026958.1_1685087_1685321_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP026958.1_1685327_1685927_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP026958.1_1685946_1686969_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP026958.1_1687234_1687420_-	NA	NA|117aa|down_1|NZ_CP026958.1_1687545_1687896_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP026958.1_1687997_1689209_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP026958.1_1689201_1689642_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP026958.1_1689803_1690568_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP026958.1_1690559_1690811_-	NA	NA|422aa|down_6|NZ_CP026958.1_1691199_1692465_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP026958.1_1692581_1695749_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP026958.1_1695932_1696250_-	NA	NA|55aa|down_9|NZ_CP026958.1_1696494_1696659_-	NA
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	9	1794867-1794952	7	CRISPRCasFinder	no	csa3	csa3,DEDDh,cas3,WYL,RT,DinG	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA,NA|53aa|down_7|NZ_CP026958.1_1805914_1806073_-,NA|35aa|down_9|NZ_CP026958.1_1806752_1806857_+	NA|172aa|up_9|NZ_CP026958.1_1769772_1770288_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|396aa|up_8|NZ_CP026958.1_1770331_1771519_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_7|NZ_CP026958.1_1771537_1772221_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|158aa|up_6|NZ_CP026958.1_1773619_1774093_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP026958.1_1774415_1775858_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP026958.1_1776005_1777070_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP026958.1_1783310_1784219_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP026958.1_1784407_1785217_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP026958.1_1785218_1786151_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP026958.1_1786177_1787533_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP026958.1_1795574_1796681_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP026958.1_1796680_1797115_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP026958.1_1797126_1799259_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP026958.1_1799293_1800832_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP026958.1_1801512_1803318_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP026958.1_1803549_1804332_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP026958.1_1804399_1805257_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP026958.1_1805914_1806073_-	NA	NA|57aa|down_8|NZ_CP026958.1_1806065_1806236_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|down_9|NZ_CP026958.1_1806752_1806857_+	NA
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	10	1807192-1807273	8	CRISPRCasFinder	no	csa3	csa3,DEDDh,cas3,WYL,RT,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA|53aa|up_2|NZ_CP026958.1_1805914_1806073_-,NA|35aa|up_0|NZ_CP026958.1_1806752_1806857_+,NA|364aa|down_0|NZ_CP026958.1_1807289_1808381_-,NA|77aa|down_5|NZ_CP026958.1_1812167_1812398_+	NA|369aa|up_9|NZ_CP026958.1_1795574_1796681_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP026958.1_1796680_1797115_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP026958.1_1797126_1799259_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP026958.1_1799293_1800832_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP026958.1_1801512_1803318_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP026958.1_1803549_1804332_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP026958.1_1804399_1805257_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_2|NZ_CP026958.1_1805914_1806073_-	NA	NA|57aa|up_1|NZ_CP026958.1_1806065_1806236_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_0|NZ_CP026958.1_1806752_1806857_+	NA	NA|364aa|down_0|NZ_CP026958.1_1807289_1808381_-	NA	NA|326aa|down_1|NZ_CP026958.1_1808646_1809624_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP026958.1_1809625_1809946_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP026958.1_1810097_1810763_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP026958.1_1811198_1812137_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP026958.1_1812167_1812398_+	NA	NA|458aa|down_6|NZ_CP026958.1_1813069_1814443_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP026958.1_1814899_1815313_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP026958.1_1815512_1815956_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP026958.1_1816076_1816787_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	11	1936346-1936435	9	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA,NA|49aa|down_2|NZ_CP026958.1_1936988_1937135_+,NA|70aa|down_3|NZ_CP026958.1_1937127_1937337_+,NA|127aa|down_7|NZ_CP026958.1_1940632_1941013_+,NA|114aa|down_9|NZ_CP026958.1_1942100_1942442_+	NA|188aa|up_9|NZ_CP026958.1_1926681_1927245_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_8|NZ_CP026958.1_1927480_1927615_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|NZ_CP026958.1_1928214_1929000_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|NZ_CP026958.1_1929360_1929987_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|416aa|up_5|NZ_CP026958.1_1930183_1931431_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_4|NZ_CP026958.1_1931455_1932199_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP026958.1_1932373_1932658_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|NZ_CP026958.1_1932733_1934350_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP026958.1_1934418_1935591_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP026958.1_1935604_1936279_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP026958.1_1936451_1936670_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP026958.1_1936674_1936992_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|49aa|down_2|NZ_CP026958.1_1936988_1937135_+	NA	NA|70aa|down_3|NZ_CP026958.1_1937127_1937337_+	NA	NA|109aa|down_4|NZ_CP026958.1_1937339_1937666_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_5|NZ_CP026958.1_1937730_1938600_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|570aa|down_6|NZ_CP026958.1_1938613_1940323_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|127aa|down_7|NZ_CP026958.1_1940632_1941013_+	NA	NA|214aa|down_8|NZ_CP026958.1_1941009_1941651_+	pfam16560, SAPI, Putative mobile pathogenicity island	NA|114aa|down_9|NZ_CP026958.1_1942100_1942442_+	NA
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	12	1971928-1972009	10	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	1971952-1971985	NZ_CP026958.1_2491285-2491252	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA,NA	NA|194aa|up_9|NZ_CP026958.1_1965030_1965612_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP026958.1_1965684_1966302_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP026958.1_1966456_1966951_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP026958.1_1967349_1967772_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP026958.1_1967919_1968636_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP026958.1_1968718_1969258_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP026958.1_1969408_1969729_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP026958.1_1969872_1970229_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP026958.1_1970386_1970767_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP026958.1_1970945_1971824_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP026958.1_1972620_1973007_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP026958.1_1972999_1973296_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP026958.1_1973545_1974571_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP026958.1_1974563_1975259_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP026958.1_1975276_1976098_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP026958.1_1976451_1976646_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP026958.1_1976879_1977731_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP026958.1_1978058_1978820_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP026958.1_1978917_1980225_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP026958.1_1980330_1981581_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001019495.2_ASM101949v2	NZ_CP026958	Staphylococcus aureus strain FDAARGOS_40 chromosome, complete genome	13	2761094-2761178	11	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	2761120-2761152	NZ_CP026958.1_2491285-2491253	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG	NA,NA	NA|228aa|up_9|NZ_CP026958.1_2750304_2750988_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP026958.1_2751231_2751408_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP026958.1_2751700_2753047_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP026958.1_2753053_2753806_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP026958.1_2753807_2754746_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP026958.1_2754749_2755889_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP026958.1_2756024_2757857_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP026958.1_2757925_2758552_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP026958.1_2758583_2759561_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP026958.1_2759660_2760785_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP026958.1_2761350_2763174_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP026958.1_2763519_2763771_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP026958.1_2763815_2764790_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_CP026958.1_2764846_2767048_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP026958.1_2767052_2767514_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP026958.1_2767605_2768292_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP026958.1_2768331_2769048_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP026958.1_2769050_2769404_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP026958.1_2769404_2769989_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP026958.1_2769978_2770548_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
