The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	4903	14733	2955890	tail,plate,holin	Staphylococcus_phage(90.91%)	11	NA	NA
WP_001190533.1|4903_5728_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|5736_7320_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|7319_7610_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|7625_9536_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|9535_11002_+|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|11001_11391_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|11383_11548_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|11593_11893_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|12028_12331_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909213.1|12341_13796_+	CHAP domain-containing protein	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000126130.1|14517_14733_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
>prophage 2
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	441082	499494	2955890	holin,terminase,tRNA,plate,head,portal,tail,capsid	Staphylococcus_phage(83.61%)	75	NA	NA
WP_000908982.1|441082_443485_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000003562.1|443484_444543_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.1	9.4e-31
WP_000435374.1|444923_445664_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_001788617.1|445903_446011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000670950.1|446047_446371_-	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001242429.1|446389_447124_-	class B sortase	NA	NA	NA	NA	NA
WP_001548422.1|447185_448154_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001220199.1|448163_449042_-	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_001246698.1|449038_450115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789821.1|450114_450798_-	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_000160859.1|451006_452059_+	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_001041586.1|452261_454199_+	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_001148123.1|454930_456376_-	CHAP domain-containing protein	NA	A0EWV1	Staphylococcus_virus	99.6	2.4e-295
WP_000354121.1|456356_456794_-|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	98.6	2.0e-72
WP_000398862.1|456849_457245_-	hypothetical protein	NA	Q4ZBW9	Staphylococcus_virus	100.0	1.6e-68
WP_000276641.1|457249_458488_-|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	100.0	3.5e-210
WP_000524017.1|458500_460399_-	CHAP domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.5	0.0e+00
WP_000466770.1|460535_460835_-	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	99.0	1.3e-46
WP_001790193.1|460875_461049_-	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000705893.1|461052_461430_-	DUF2977 domain-containing protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
WP_000259631.1|461429_463253_-|plate	BppU family phage baseplate upper protein	plate	B2ZYZ8	Staphylococcus_phage	99.8	0.0e+00
WP_000369024.1|463252_465163_-	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.8	0.0e+00
WP_000156407.1|465177_467079_-	peptidase	NA	Q8SDT5	Staphylococcus_phage	99.8	0.0e+00
WP_000350680.1|467087_468035_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_000141452.1|468047_471512_-	hypothetical protein	NA	S4V989	Staphylococcus_phage	99.0	1.8e-264
WP_000105584.1|471528_471873_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100162.1|471902_472268_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	99.2	8.1e-59
WP_000188648.1|472928_473312_-	hypothetical protein	NA	A0EWT5	Staphylococcus_virus	99.2	3.5e-68
WP_001017815.1|473323_473671_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_001268312.1|473670_473973_-	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_000208960.1|473969_474302_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114085.1|474310_474598_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000438504.1|474619_475594_-|capsid	phage major capsid protein	capsid	A0EWT0	Staphylococcus_virus	100.0	1.3e-183
WP_000392148.1|475607_476228_-	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	97.6	1.2e-73
WP_000072208.1|476336_476507_-	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_001133044.1|476579_477575_-|capsid	minor capsid protein	capsid	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000909977.1|477581_479120_-|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	99.6	1.3e-291
WP_000169946.1|479130_480408_-|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
WP_001003271.1|480394_480835_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000162697.1|481021_481444_-	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	99.3	2.1e-74
WP_000989960.1|481467_481614_-	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
WP_000989954.1|481614_481980_-	hypothetical protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
WP_000591892.1|481980_482154_-	transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	96.5	4.1e-21
WP_000483478.1|482146_482383_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	98.7	5.6e-37
WP_000195816.1|482407_482644_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	97.4	6.9e-35
WP_000185636.1|482680_483190_-	dUTP pyrophosphatase	NA	A0A1X9H051	Staphylococcus_phage	100.0	6.6e-91
WP_000144711.1|483422_483731_-	hypothetical protein	NA	R4IFL1	Staphylococcus_phage	100.0	4.8e-52
WP_000979209.1|483727_484075_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695757.1|484071_484473_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	91.0	6.0e-63
WP_000693989.1|484475_484682_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000131363.1|484696_484939_-	hypothetical protein	NA	D2JGL2	Staphylococcus_phage	97.5	2.5e-40
WP_000101274.1|484942_485311_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000401960.1|485323_485728_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|485736_485955_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148316.1|485961_486846_-	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	100.0	5.4e-141
WP_000934764.1|486875_487346_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
WP_071621397.1|487346_487964_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138472.1|488044_488965_-	recombinase	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
WP_000700572.1|488966_490910_-	hypothetical protein	NA	A0EWX0	Staphylococcus_phage	99.8	0.0e+00
WP_001205732.1|490918_491182_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291503.1|491190_491451_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_000165362.1|491431_491758_-	DUF2482 family protein	NA	A0EWW7	Staphylococcus_phage	100.0	1.6e-53
WP_000066025.1|491852_492014_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	98.1	7.2e-20
WP_000395455.1|492193_492424_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_001148623.1|492599_493343_-	oxidoreductase	NA	Q4ZBN2	Staphylococcus_phage	100.0	6.8e-137
WP_044118938.1|493350_493644_+	hypothetical protein	NA	Q4ZB03	Staphylococcus_virus	98.8	4.0e-40
WP_001153175.1|493636_493798_-	hypothetical protein	NA	Q4ZBN4	Staphylococcus_phage	100.0	1.9e-20
WP_000272858.1|493812_494061_-	helix-turn-helix transcriptional regulator	NA	Q4ZBN5	Staphylococcus_phage	100.0	2.2e-39
WP_001260487.1|494224_494548_+	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000525016.1|494560_495022_+	hypothetical protein	NA	Q4ZBN7	Staphylococcus_phage	100.0	1.2e-83
WP_000861313.1|495371_496757_+	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000290472.1|496873_497047_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000872158.1|497126_497684_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000843611.1|497810_498950_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000401377.1|499011_499494_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 3
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	551088	559561	2955890		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|551088_551655_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|551657_552686_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|552678_554163_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|554141_556331_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|556323_556995_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|556996_557260_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|557259_557964_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|557967_559092_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|559078_559561_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 4
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	579547	607109	2955890	bacteriocin,transposase,protease	Enterococcus_phage(25.0%)	30	NA	NA
WP_001088780.1|579547_580729_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|580766_581096_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|581334_582156_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150195.1|582148_582952_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|582938_584612_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_001804449.1|584598_585810_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_001791731.1|585886_585991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070966.1|586141_587080_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620953.1|587131_587683_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001788574.1|587772_588063_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_001790177.1|588126_588258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|588303_589263_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|589739_590096_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719184.1|590184_591666_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410720.1|591671_591959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795544.1|592237_592528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|593087_594260_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001566013.1|594337_594589_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	40.3	3.5e-05
WP_000668623.1|594585_594906_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870806.1|594908_596873_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001790097.1|596916_597189_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|597198_597300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|598216_598819_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|598833_599010_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|599208_600195_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|600275_600494_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|600703_601273_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414177.1|601759_603271_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021864.1|603409_604768_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000455278.1|604784_607109_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
>prophage 5
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	721740	742949	2955890	coat,terminase,integrase	Staphylococcus_phage(77.78%)	33	724462:724478	740397:740413
WP_000168845.1|721740_722502_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_001183858.1|722829_723681_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000752917.1|723913_724108_-	CsbD family protein	NA	NA	NA	NA	NA
724462:724478	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_000382163.1|724938_725139_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_001566008.1|725125_725236_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	91.7	7.1e-11
WP_001795626.1|725306_725459_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_001035631.1|725831_726389_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_000278085.1|726466_727267_-	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001293067.1|727574_728144_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000358777.1|728140_728482_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_000771368.1|728484_729012_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448101.1|729062_729281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846285.1|729298_729877_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_001190615.1|729888_730230_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_001019764.1|730746_731388_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_000998181.1|731384_731669_-	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001039168.1|731670_732033_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000390455.1|732333_733791_-	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
WP_001002732.1|733807_734677_-	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_001103942.1|734740_735061_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001058486.1|735063_735273_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_000784875.1|735265_735412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000091733.1|735423_735696_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	3.7e-40
WP_000243851.1|735688_735952_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_001260004.1|736144_736477_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000281657.1|736488_736947_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001228759.1|736963_737395_+	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_001033316.1|737464_738193_+	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
WP_000733775.1|738216_738945_+	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
WP_000266157.1|739033_740254_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000732326.1|740396_741218_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
740397:740413	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_000520233.1|741235_741931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000571218.1|741923_742949_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 6
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	822521	837194	2955890		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|822521_823283_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|823279_824236_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|824222_825194_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|825232_825388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|825731_826703_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|826820_828926_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|828888_829287_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|830087_830954_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|830973_831474_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|831814_833320_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|833397_833499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|833589_834507_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197271.1|835242_835785_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|836135_837194_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 7
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	849166	856986	2955890		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|849166_850318_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|850301_850895_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|851245_851914_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|851915_852335_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|852338_853052_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|853150_853735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|854014_854455_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|854796_855270_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|855244_855931_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|855930_856986_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 8
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	1174848	1247667	2955890	transposase,coat,terminase,integrase	Staphylococcus_phage(44.44%)	86	1164140:1164155	1250932:1250947
1164140:1164155	attL	TTTGTTTTAGTAATAC	NA	NA	NA	NA
WP_000195429.1|1174848_1176021_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000782618.1|1177088_1177784_-	superantigen-like protein SSL2	NA	NA	NA	NA	NA
WP_000669005.1|1178069_1178750_-	superantigen-like protein SSL1	NA	NA	NA	NA	NA
WP_001024377.1|1179221_1180067_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_001021622.1|1180085_1180445_+	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_000248839.1|1180968_1181121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000159787.1|1181381_1181654_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041885.1|1182052_1182769_+	mRNA interferase PemK	NA	U5U4R0	Staphylococcus_phage	37.9	3.8e-28
WP_001549130.1|1182751_1184113_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000551776.1|1184669_1185206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000997693.1|1185699_1186890_+|transposase	IS256-like element ISLgar5 family transposase	transposase	NA	NA	NA	NA
WP_000470931.1|1187023_1189213_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_000181735.1|1189209_1191003_+	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
WP_000421279.1|1191202_1191517_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_001234191.1|1191537_1191915_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000185761.1|1191924_1192698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001130244.1|1192719_1194123_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	2.2e-176
WP_000426689.1|1194304_1195489_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
WP_000055376.1|1195485_1195776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001009054.1|1195772_1195994_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000675717.1|1196035_1196815_+	abortive infection family protein	NA	NA	NA	NA	NA
WP_000870467.1|1196881_1197376_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.4	2.8e-54
WP_000248477.1|1197431_1198070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000723887.1|1198141_1198537_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
WP_000331165.1|1198520_1200974_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.9	0.0e+00
WP_000192392.1|1200970_1202998_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.5	2.3e-195
WP_000768372.1|1202994_1204017_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	3.1e-132
WP_000584386.1|1204033_1204963_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.9e-83
WP_001791010.1|1205207_1205324_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691738.1|1205339_1207259_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.0	0.0e+00
WP_032506803.1|1207356_1207545_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
WP_001227350.1|1207602_1207956_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_000804879.1|1208486_1208909_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	7.5e-48
WP_000845143.1|1208905_1209136_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_071875954.1|1209349_1209553_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_000633907.1|1209633_1209834_+	DUF3173 family protein	NA	NA	NA	NA	NA
WP_000237797.1|1209860_1211054_+|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000424966.1|1211121_1212663_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1212687_1214154_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000793009.1|1214191_1215460_-	purine permease	NA	NA	NA	NA	NA
WP_000421410.1|1215459_1216038_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000763768.1|1216550_1216958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394698.1|1217100_1217763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956132.1|1217880_1218837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001789518.1|1219627_1219729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000991007.1|1219813_1221202_+	L-cystine transporter	NA	NA	NA	NA	NA
WP_001289311.1|1221282_1222038_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000052781.1|1222529_1223099_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_000930486.1|1223114_1224638_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.9e-40
WP_001795623.1|1224716_1225010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000746687.1|1225082_1225709_+	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_000868248.1|1225963_1226347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000158374.1|1226412_1226994_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_000211676.1|1227171_1227381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000466748.1|1227419_1227671_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_001055897.1|1227970_1228234_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000769721.1|1228371_1228944_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_000849177.1|1229124_1229493_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000475326.1|1229861_1230473_-	toxin	NA	NA	NA	NA	NA
WP_000237577.1|1230832_1230991_+|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	66.7	6.7e-10
WP_001797636.1|1231068_1231380_+|integrase	tyrosine-type recombinase/integrase	integrase	Q4ZE80	Staphylococcus_phage	70.5	5.5e-24
WP_001822249.1|1231418_1232357_+	Abi family protein	NA	NA	NA	NA	NA
WP_000813310.1|1233155_1233668_-	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	99.4	4.2e-69
WP_001577971.1|1233785_1234067_-	hypothetical protein	NA	Q4ZE84	Staphylococcus_phage	85.0	3.7e-19
WP_000022954.1|1234377_1234548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293077.1|1234822_1235392_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	100.0	1.4e-102
WP_000358778.1|1235388_1235730_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771370.1|1235732_1236260_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	96.6	1.7e-86
WP_000448770.1|1236310_1236529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846280.1|1236546_1237125_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_001190606.1|1237136_1237478_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	4.2e-57
WP_001019274.1|1237927_1238569_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	6.5e-112
WP_000567971.1|1238570_1238915_-	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	74.5	1.4e-39
WP_000974924.1|1239185_1241438_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	73.0	0.0e+00
WP_001103949.1|1241508_1241823_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	7.1e-19
WP_001058494.1|1241825_1242035_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	8.5e-29
WP_000784873.1|1242027_1242174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001138303.1|1242185_1242458_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	2.1e-43
WP_001063623.1|1242458_1242671_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	91.4	4.6e-30
WP_000142630.1|1242820_1243555_+	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
WP_000270128.1|1243853_1245068_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	99.5	9.8e-226
WP_000119675.1|1245091_1245889_+	mRNA interferase PemK	NA	Q4ZE81	Staphylococcus_phage	100.0	7.1e-108
WP_000897044.1|1246117_1246360_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000934799.1|1246411_1246915_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1246935_1247232_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1247475_1247667_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
1250932:1250947	attR	TTTGTTTTAGTAATAC	NA	NA	NA	NA
>prophage 9
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	2381017	2466671	2955890	capsid,terminase,holin,protease,portal,head,tail,integrase	Staphylococcus_phage(91.76%)	116	2381167:2381184	2429888:2429905
WP_001293058.1|2381017_2381608_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
2381167:2381184	attL	ATATATACAAGAACAAAA	NA	NA	NA	NA
WP_001797573.1|2381925_2382303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022887.1|2382467_2382911_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001045079.1|2383763_2385071_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000812008.1|2386203_2387049_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206638.1|2387420_2388644_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791407.1|2389078_2390134_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595324.1|2390155_2391172_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
WP_000857193.1|2392290_2393328_-|integrase	site-specific integrase	integrase	E9LT82	Staphylococcus_phage	93.0	1.0e-178
WP_000191459.1|2393435_2394050_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_001013104.1|2394046_2394193_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000705240.1|2394228_2394411_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001208482.1|2394610_2395381_-	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_000338186.1|2395539_2395764_+	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
WP_000435341.1|2395781_2396042_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000351243.1|2396065_2396605_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_001148337.1|2396661_2397411_+	antirepressor	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_001148861.1|2397426_2397624_+	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_000939496.1|2397654_2397795_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000275058.1|2397809_2398442_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_001120197.1|2398500_2398821_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066020.1|2398817_2398979_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000291487.1|2399071_2399332_+	DUF1108 family protein	NA	A0A2H4PQR7	Staphylococcus_phage	100.0	3.4e-43
WP_000815400.1|2399341_2399563_+	DUF2483 family protein	NA	A0A2H4PQR5	Staphylococcus_phage	100.0	4.2e-34
WP_000139741.1|2399555_2400335_+	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	99.6	7.4e-142
WP_011447037.1|2400418_2400919_+	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
WP_001199434.1|2400931_2401603_+	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	98.7	4.9e-126
WP_001081076.1|2401599_2401749_+	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_000414755.1|2401741_2402023_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000132048.1|2402087_2402819_+	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	79.3	1.2e-80
WP_000443353.1|2402831_2403617_+	ATP-binding protein	NA	A0A0H4J332	Staphylococcus_phage	100.0	1.9e-145
WP_000628839.1|2403613_2403772_+	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	98.1	4.5e-22
WP_001123693.1|2403784_2404006_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	97.3	3.2e-34
WP_000049801.1|2404016_2404421_+	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	99.3	2.1e-68
WP_001187246.1|2404425_2404611_+	DUF3113 family protein	NA	A0A1X9H053	Staphylococcus_phage	96.7	1.2e-26
WP_000907344.1|2404611_2405229_+	hypothetical protein	NA	A0A059T7P3	Staphylococcus_phage	99.0	2.8e-83
WP_000022723.1|2405228_2405483_+	DUF3310 domain-containing protein	NA	A0A2K9VBW1	Staphylococcus_phage	97.6	1.4e-41
WP_073546265.1|2405482_2405731_+	hypothetical protein	NA	A0A2I6PDB4	Staphylococcus_phage	93.9	2.8e-39
WP_000693995.1|2405744_2405951_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	98.5	8.7e-34
WP_000695756.1|2405953_2406358_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000983953.1|2406354_2406549_+	hypothetical protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
WP_000982705.1|2406545_2406995_+	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	3.5e-80
WP_001105601.1|2406991_2407276_+	hypothetical protein	NA	E9LT36	Staphylococcus_phage	98.9	1.0e-45
WP_001065083.1|2407268_2407517_+	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_000185669.1|2407509_2408046_+	hypothetical protein	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_000195768.1|2408082_2408289_+	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	98.5	4.2e-20
WP_000219344.1|2408285_2408489_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	97.0	8.3e-29
WP_001820291.1|2408442_2408718_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	94.5	1.7e-40
WP_001570808.1|2408707_2409094_+	hypothetical protein	NA	Q4ZBK1	Staphylococcus_phage	98.4	1.5e-63
WP_000595265.1|2409093_2409243_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001570807.1|2409242_2409443_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000282755.1|2409465_2409936_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	99.3	1.7e-69
WP_000406191.1|2410050_2410503_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000817289.1|2410518_2410863_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000919026.1|2410991_2411459_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000133304.1|2411461_2413156_+|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000644964.1|2413130_2413370_+	membrane protein	NA	A7TWC1	Staphylococcus_phage	98.7	1.2e-34
WP_011447040.1|2413435_2414626_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
WP_000032525.1|2414618_2415203_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000849950.1|2415290_2416538_+|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_001252099.1|2416573_2416732_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_001177483.1|2416740_2417073_+|head,tail	phage head-tail adapter protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_000975314.1|2417059_2417395_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_000501242.1|2417394_2417772_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	98.4	3.4e-60
WP_000608371.1|2417768_2418149_+	hypothetical protein	NA	Q9MBP5	Staphylococcus_prophage	85.7	2.9e-59
WP_000570648.1|2418149_2419103_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	95.0	4.0e-166
WP_000442605.1|2419169_2419616_+	hypothetical protein	NA	O80053	Staphylococcus_phage	92.6	1.3e-69
WP_000571956.1|2419675_2419798_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_001133522.1|2419853_2424503_+|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	94.2	0.0e+00
WP_001154318.1|2424502_2425993_+|tail	phage tail protein	tail	R9QST9	Staphylococcus_phage	99.8	5.9e-297
WP_000582129.1|2426008_2429791_+	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.3	0.0e+00
WP_001000058.1|2429783_2429936_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
2429888:2429905	attR	ATATATACAAGAACAAAA	NA	NA	NA	NA
WP_001262621.1|2429981_2430269_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_000340977.1|2430324_2430699_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000750412.1|2431071_2431845_+	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_011447039.1|2431953_2432130_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|2432182_2432290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611508.1|2432341_2432596_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	1.5e-40
WP_000861038.1|2432607_2433363_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920038.1|2433553_2434045_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_165495560.1|2434689_2435031_+	hypothetical protein	NA	R9QTN8	Staphylococcus_phage	95.6	4.2e-57
WP_000702263.1|2435541_2435892_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2435944_2436205_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669791.1|2436515_2436695_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001565911.1|2437652_2439407_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068547.1|2440031_2441318_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|2441517_2441616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|2441858_2442035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|2442298_2442679_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|2442675_2443572_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|2443572_2444253_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|2444249_2445122_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|2445121_2445862_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|2445927_2446491_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|2446611_2447136_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|2447195_2447753_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|2447749_2448592_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188077.1|2448648_2449689_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|2450139_2450313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|2450885_2451287_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|2451556_2452585_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021214.1|2452704_2454084_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001797527.1|2454135_2454309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|2454503_2455433_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|2455485_2456046_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275732.1|2456417_2457515_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000323161.1|2457719_2459282_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|2459292_2459400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177817.1|2459471_2460266_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|2460285_2461362_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284431.1|2461545_2463015_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040873.1|2463007_2463829_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000011542.1|2464099_2464702_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|2464682_2464856_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|2465147_2465474_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827748.1|2465504_2466671_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 10
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	2526703	2645128	2955890	transposase,protease,tRNA	Staphylococcus_phage(90.77%)	110	NA	NA
WP_001549130.1|2526703_2528065_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|2528557_2529619_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|2529876_2531334_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|2531320_2532049_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001789049.1|2532184_2533327_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|2533331_2533802_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|2533960_2534560_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2534584_2534737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|2535513_2535909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|2536104_2537490_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2537952_2538774_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|2538936_2540049_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2540070_2540694_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2541049_2541514_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992527.1|2541692_2542817_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2542885_2543230_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|2543612_2543711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|2544001_2545198_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584648.1|2545187_2548124_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|2548120_2549062_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|2549182_2550145_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2550348_2550906_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2551638_2552004_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|2552145_2552568_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216878.1|2552701_2553442_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001245769.1|2553434_2554658_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|2554781_2555285_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|2555447_2555558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2555547_2556585_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2556642_2557566_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167538.1|2557589_2558990_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|2559312_2559867_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000206350.1|2562324_2563113_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
WP_001790220.1|2563125_2563665_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000473596.1|2564464_2565400_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|2565401_2566385_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|2566626_2566770_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|2567507_2567651_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|2567715_2570709_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|2570701_2571946_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|2571961_2572480_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|2572489_2573863_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|2573885_2574578_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|2574574_2575336_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|2575332_2576031_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|2576504_2577071_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001039435.1|2578034_2578742_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001039447.1|2578866_2579589_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|2579646_2580366_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038704.1|2580486_2581206_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|2581154_2581262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|2581363_2582080_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|2582230_2582950_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|2583014_2583149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011443644.1|2583129_2584869_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_000072576.1|2584861_2586061_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000831218.1|2586910_2591023_+	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_002868972.1|2591561_2591921_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|2592268_2592370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|2592492_2592588_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|2592790_2592934_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|2593537_2593921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|2593931_2594108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|2594109_2594295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|2594408_2595050_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|2595267_2595819_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|2595916_2596261_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000669046.1|2596301_2596928_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000070653.1|2597002_2597998_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|2598078_2598729_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|2599031_2599487_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|2599645_2601124_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|2601128_2602130_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|2602126_2602384_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|2602449_2602923_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|2602927_2603674_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000093392.1|2604048_2604534_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_000109906.1|2604669_2606262_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2606632_2607826_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|2607950_2608859_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|2609070_2609904_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000623471.1|2611986_2612340_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200542.1|2612336_2612702_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|2612957_2613260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|2613519_2614233_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|2614672_2615308_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|2615603_2616047_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|2616033_2616477_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|2616589_2617060_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|2617258_2617483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2617758_2618613_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|2618907_2619303_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989121.1|2619320_2620613_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|2620612_2620927_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261677.1|2621449_2622952_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000384180.1|2623444_2624476_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	2.4e-196
WP_000493892.1|2624482_2625115_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159022.1|2625125_2626307_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|2626319_2626784_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|2626905_2627907_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001790712.1|2628018_2628138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|2628140_2628968_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000195429.1|2630289_2631462_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000757543.1|2631878_2632280_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|2632399_2632963_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|2632959_2633913_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|2634022_2635204_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108732.1|2635494_2637909_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000836465.1|2637930_2638242_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050550.1|2638567_2645128_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 11
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	2772227	2781270	2955890	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|2772227_2773232_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|2773233_2774259_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112050.1|2774281_2775421_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	3.5e-84
WP_001160682.1|2775439_2775700_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|2775974_2778254_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|2778456_2780730_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|2780751_2781270_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 12
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	2850408	2858720	2955890	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|2850408_2852208_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|2852431_2853538_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|2853668_2854346_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|2854348_2855449_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|2855562_2856909_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|2856918_2857809_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|2857934_2858720_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 13
NZ_CP026072	Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome	2955890	2913844	2951538	2955890	terminase,protease,integrase,portal,head,tail,capsid	Staphylococcus_phage(89.47%)	58	2910665:2910679	2938611:2938625
2910665:2910679	attL	CGATAAAGAAAGAAT	NA	NA	NA	NA
WP_000064078.1|2913844_2914570_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987769.1|2914550_2916302_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_001548912.1|2916546_2917476_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001566047.1|2917468_2919496_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	6.9e-115
WP_000264751.1|2919538_2920744_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191459.1|2920869_2921484_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_078064955.1|2921480_2921627_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	95.8	5.8e-16
WP_000449655.1|2921716_2922112_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755718.1|2922140_2922575_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000525000.1|2922592_2923054_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.3	1.3e-85
WP_000429766.1|2923066_2923396_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|2923556_2923748_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001001356.1|2923831_2924008_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001566045.1|2924004_2924244_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	98.7	7.4e-37
WP_001036299.1|2924290_2924506_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|2924530_2924794_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001285951.1|2924805_2924967_+	DUF1270 domain-containing protein	NA	A0A2I6PEK6	Staphylococcus_phage	100.0	1.1e-20
WP_000829612.1|2925059_2925377_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_000163431.1|2925369_2925672_+	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000291481.1|2925676_2925937_+	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000985980.1|2925950_2926313_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	99.2	1.9e-55
WP_000762552.1|2926309_2927476_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000645048.1|2927501_2928059_+	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_001802096.1|2928126_2930079_+	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|2930091_2930277_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|2930276_2930678_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022736.1|2930677_2930932_+	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
WP_078064221.1|2930931_2931180_+	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	97.5	1.7e-39
WP_000693989.1|2931193_2931400_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000695756.1|2931402_2931807_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000979209.1|2931803_2932151_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000144703.1|2932147_2932456_+	hypothetical protein	NA	Q6R826	Staphylococcus_virus	96.1	8.4e-49
WP_001065071.1|2932448_2932697_+	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	97.6	2.0e-37
WP_000185653.1|2932689_2933220_+	dUTP pyrophosphatase	NA	C8CH05	Staphylococcus_phage	100.0	1.7e-94
WP_000195835.1|2933256_2933463_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	97.1	6.4e-29
WP_000592205.1|2933459_2933846_+	hypothetical protein	NA	A0A0H3U465	Staphylococcus_phage	96.9	2.4e-61
WP_000595263.1|2933842_2933995_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000265252.1|2934062_2934263_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000884870.1|2934550_2936998_+	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001801650.1|2937106_2937205_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000665205.1|2937338_2937629_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_001793488.1|2937609_2938977_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
2938611:2938625	attR	CGATAAAGAAAGAAT	NA	NA	NA	NA
WP_000513699.1|2938989_2939427_+	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_000160689.1|2939583_2939898_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000778932.1|2940026_2940332_+|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000153555.1|2940321_2942013_+|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_001100671.1|2942017_2943256_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	2.6e-234
WP_000061862.1|2943239_2944013_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.4	3.0e-135
WP_001142738.1|2944024_2945188_+|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
WP_000050973.1|2945256_2945535_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395495.1|2945546_2945879_+	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	99.1	8.2e-58
WP_000110020.1|2945875_2946277_+	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_001023802.1|2946277_2946673_+	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000807541.1|2946707_2947349_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	5.0e-120
WP_000169127.1|2947440_2947896_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|2947953_2948304_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|2948345_2948504_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003433.1|2948517_2951538_+|tail	phage tail tape measure protein	tail	Q9B0D2	Staphylococcus_virus	99.8	0.0e+00
