assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	1	52275-52355	1	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,csa3,DinG	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	17	52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330|52300-52330	NZ_CP026069.1_1389980-1390010|NZ_CP026069.1_1390036-1390066|NZ_CP026069.1_1390092-1390122|NZ_CP026069.1_1390148-1390178|NZ_CP026069.1_41499-41529|NZ_CP026069.1_218533-218563|NZ_CP026069.1_624778-624808|NZ_CP026069.1_922822-922792|NZ_CP026069.1_1210907-1210877|NZ_CP026069.1_1390204-1390234|NZ_CP026069.1_1523322-1523292|NZ_CP026069.1_1842185-1842215|NZ_CP026069.1_2038328-2038298|NZ_CP026069.1_2126732-2126762|NZ_CP026069.1_2332830-2332860|NZ_CP026069.1_2435452-2435422|NZ_CP026069.1_2645708-2645678	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA|55aa|up_9|NZ_CP026069.1_42808_42973_+,NA|106aa|up_8|NZ_CP026069.1_43217_43535_+,NA|84aa|up_5|NZ_CP026069.1_48656_48908_+,NA|62aa|up_0|NZ_CP026069.1_52047_52233_+,NA	NA|55aa|up_9|NZ_CP026069.1_42808_42973_+	NA	NA|106aa|up_8|NZ_CP026069.1_43217_43535_+	NA	NA|1056aa|up_7|NZ_CP026069.1_43718_46886_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP026069.1_47002_48268_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP026069.1_48656_48908_+	NA	NA|255aa|up_4|NZ_CP026069.1_48899_49664_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP026069.1_49825_50266_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP026069.1_50258_51470_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP026069.1_51571_51922_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP026069.1_52047_52233_+	NA	NA|341aa|down_0|NZ_CP026069.1_52498_53521_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP026069.1_53540_54140_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP026069.1_54146_54380_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP026069.1_54385_54832_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP026069.1_54845_55331_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP026069.1_55327_56587_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP026069.1_56649_57144_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP026069.1_57145_57652_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP026069.1_57682_58687_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP026069.1_58856_59462_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	2	723264-723348	2	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	4	723290-723322|723290-723322|723290-723322|723290-723322	NZ_CP026069.1_2126720-2126688|NZ_CP026069.1_1382768-1382736|NZ_CP026069.1_1382827-1382795|NZ_CP026069.1_2038340-2038372	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA|402aa|up_9|NZ_CP026069.1_712409_713615_+,NA|68aa|down_0|NZ_CP026069.1_723409_723613_-	NA|402aa|up_9|NZ_CP026069.1_712409_713615_+	NA	NA|402aa|up_8|NZ_CP026069.1_713615_714821_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP026069.1_714831_715389_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP026069.1_715388_716276_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP026069.1_716329_717592_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP026069.1_717668_718814_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP026069.1_718878_719205_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP026069.1_719211_719595_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP026069.1_720021_721509_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP026069.1_722155_723115_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP026069.1_723409_723613_-	NA	NA|171aa|down_1|NZ_CP026069.1_723791_724304_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP026069.1_724645_725386_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NZ_CP026069.1_725399_726371_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP026069.1_726367_727129_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP026069.1_727141_728173_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP026069.1_728389_728749_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP026069.1_728922_729948_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP026069.1_730333_731584_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP026069.1_732030_739206_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	3	963049-963150	3	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,csa3,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA|70aa|up_9|NZ_CP026069.1_953088_953298_-,NA|128aa|up_7|NZ_CP026069.1_954122_954506_-,NA|33aa|up_1|NZ_CP026069.1_960753_960852_+,NA|221aa|down_1|NZ_CP026069.1_964240_964903_-,NA|68aa|down_9|NZ_CP026069.1_972450_972654_+	NA|70aa|up_9|NZ_CP026069.1_953088_953298_-	NA	NA|194aa|up_8|NZ_CP026069.1_953475_954057_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP026069.1_954122_954506_-	NA	NA|209aa|up_6|NZ_CP026069.1_954775_955402_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NZ_CP026069.1_955845_957369_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP026069.1_957384_957954_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP026069.1_958445_959201_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP026069.1_959280_960669_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NZ_CP026069.1_960753_960852_+	NA	NA|440aa|up_0|NZ_CP026069.1_961515_962835_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NZ_CP026069.1_963166_964123_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP026069.1_964240_964903_-	NA	NA|136aa|down_2|NZ_CP026069.1_965045_965453_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP026069.1_965965_966544_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP026069.1_966543_967812_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP026069.1_967849_969316_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP026069.1_969340_970882_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP026069.1_970949_972143_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP026069.1_972169_972370_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|68aa|down_9|NZ_CP026069.1_972450_972654_+	NA
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	4	1377178-1377256	4	CRISPRCasFinder	no	cas3	RT,WYL,cas3,DEDDh,csa3,DinG	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	1377202-1377232|1377202-1377232|1377202-1377232	NZ_CP026069.1_846490-846460|NZ_CP026069.1_846435-846405|NZ_CP026069.1_1822397-1822367	NA	1	1	Unclear	RT,WYL,cas3,DEDDh,csa3,DinG	NA|35aa|up_7|NZ_CP026069.1_1368054_1368159_+,NA|36aa|up_5|NZ_CP026069.1_1369591_1369699_+,NA	NA|191aa|up_9|NZ_CP026069.1_1364495_1365068_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP026069.1_1365481_1368013_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP026069.1_1368054_1368159_+	NA	NA|370aa|up_6|NZ_CP026069.1_1368327_1369438_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP026069.1_1369591_1369699_+	NA	NA|280aa|up_4|NZ_CP026069.1_1369846_1370686_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP026069.1_1370859_1371510_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP026069.1_1371506_1371743_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP026069.1_1372011_1373997_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP026069.1_1374004_1376851_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP026069.1_1377514_1378447_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP026069.1_1378452_1379292_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP026069.1_1379299_1379785_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP026069.1_1379792_1381232_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP026069.1_1381298_1382234_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP026069.1_1383178_1384090_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP026069.1_1384086_1385082_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP026069.1_1385192_1386137_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP026069.1_1386700_1387288_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP026069.1_1387530_1388433_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	5	1420691-1420843	1,5	PILER-CR,CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,csa3,DinG	Orphan	AATGCAAGTTGGGGTGGGGGCCCCAACACAGAGAAATTGGATTCCCAATTTC,ACAATGCAAGTTGGGGTGGGGGCC	52,24	2	14	1420802-1420824|1420802-1420824|1420802-1420824|1420802-1420824|1420802-1420824|1420802-1420824|1420802-1420824|1420802-1420824|1420802-1420824|1420756-1420789|1420756-1420789|1420756-1420789|1420756-1420789|1420756-1420789	NZ_CP026069.1_494187-494165|NZ_CP026069.1_1377197-1377175|NZ_CP026069.1_1728610-1728588|NZ_CP026069.1_2338448-2338426|NZ_CP026069.1_1669847-1669825|NZ_CP026069.1_2435483-2435505|NZ_CP026069.1_52271-52249|NZ_CP026069.1_1512603-1512625|NZ_CP026069.1_2332799-2332777|NZ_CP026069.1_1377210-1377177|NZ_CP026069.1_2338461-2338428|NZ_CP026069.1_1728623-1728590|NZ_CP026069.1_494200-494167|NZ_CP026069.1_2122314-2122347	NA:NA	2,1	2	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA|193aa|up_9|NZ_CP026069.1_1411187_1411766_+,NA|114aa|up_6|NZ_CP026069.1_1412582_1412924_+,NA|61aa|down_5|NZ_CP026069.1_1427407_1427590_-,NA|87aa|down_9|NZ_CP026069.1_1429639_1429900_+	NA|193aa|up_9|NZ_CP026069.1_1411187_1411766_+	NA	NA|73aa|up_8|NZ_CP026069.1_1411783_1412002_+	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|176aa|up_7|NZ_CP026069.1_1412052_1412580_+	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|114aa|up_6|NZ_CP026069.1_1412582_1412924_+	NA	NA|190aa|up_5|NZ_CP026069.1_1412920_1413490_+	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|235aa|up_4|NZ_CP026069.1_1413644_1414349_-	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|187aa|up_3|NZ_CP026069.1_1415227_1415788_-	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|267aa|up_2|NZ_CP026069.1_1416574_1417375_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|241aa|up_1|NZ_CP026069.1_1417543_1418266_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|436aa|up_0|NZ_CP026069.1_1419282_1420590_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|401aa|down_0|NZ_CP026069.1_1420897_1422100_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP026069.1_1422535_1423591_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP026069.1_1423612_1424629_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP026069.1_1425747_1426785_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|155aa|down_4|NZ_CP026069.1_1426843_1427308_-	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|61aa|down_5|NZ_CP026069.1_1427407_1427590_-	NA	NA|286aa|down_6|NZ_CP026069.1_1427634_1428492_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|239aa|down_7|NZ_CP026069.1_1428503_1429220_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|81aa|down_8|NZ_CP026069.1_1429383_1429626_+	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|87aa|down_9|NZ_CP026069.1_1429639_1429900_+	NA
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	6	1856795-1856879	6	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	1856821-1856853|1856821-1856853|1856821-1856853	NZ_CP026069.1_1382768-1382736|NZ_CP026069.1_1382827-1382795|NZ_CP026069.1_2126720-2126688	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA,NA	NA|190aa|up_9|NZ_CP026069.1_1847424_1847994_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP026069.1_1847983_1848568_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP026069.1_1848568_1848922_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP026069.1_1848924_1849641_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP026069.1_1849680_1850367_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP026069.1_1850458_1850920_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP026069.1_1850978_1853126_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP026069.1_1853182_1854157_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP026069.1_1854201_1854453_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP026069.1_1854798_1856622_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP026069.1_1857187_1858312_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP026069.1_1858411_1859389_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP026069.1_1859420_1860047_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP026069.1_1860115_1861948_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP026069.1_1862083_1863223_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP026069.1_1863226_1864165_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP026069.1_1864166_1864919_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP026069.1_1864925_1866272_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP026069.1_1866564_1866741_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP026069.1_1866984_1867668_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	7	2645963-2646044	7	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	2645987-2646020	NZ_CP026069.1_2126721-2126688	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA,NA|38aa|down_1|NZ_CP026069.1_2647027_2647141_-	NA|417aa|up_9|NZ_CP026069.1_2636390_2637641_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP026069.1_2637746_2639054_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP026069.1_2639151_2639913_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP026069.1_2640240_2641092_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP026069.1_2641325_2641520_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP026069.1_2641873_2642695_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP026069.1_2642712_2643408_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP026069.1_2643400_2644426_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP026069.1_2644675_2644972_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP026069.1_2644964_2645351_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP026069.1_2646147_2647026_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP026069.1_2647027_2647141_-	NA	NA|127aa|down_2|NZ_CP026069.1_2647204_2647585_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP026069.1_2647742_2648099_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP026069.1_2648242_2648563_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP026069.1_2648713_2649253_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP026069.1_2649335_2650052_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP026069.1_2650199_2650622_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP026069.1_2651020_2651515_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP026069.1_2651669_2652287_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	8	2681538-2681626	8	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,csa3,DinG	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA|114aa|up_9|NZ_CP026069.1_2675529_2675871_-,NA|127aa|up_7|NZ_CP026069.1_2676958_2677339_-,NA|70aa|up_3|NZ_CP026069.1_2680634_2680844_-,NA|49aa|up_2|NZ_CP026069.1_2680836_2680983_-,NA	NA|114aa|up_9|NZ_CP026069.1_2675529_2675871_-	NA	NA|214aa|up_8|NZ_CP026069.1_2676320_2676962_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NZ_CP026069.1_2676958_2677339_-	NA	NA|570aa|up_6|NZ_CP026069.1_2677648_2679358_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|NZ_CP026069.1_2679371_2680241_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|109aa|up_4|NZ_CP026069.1_2680305_2680632_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NZ_CP026069.1_2680634_2680844_-	NA	NA|49aa|up_2|NZ_CP026069.1_2680836_2680983_-	NA	NA|106aa|up_1|NZ_CP026069.1_2680979_2681297_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP026069.1_2681301_2681520_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP026069.1_2681692_2682367_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP026069.1_2682380_2683553_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP026069.1_2683621_2685238_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP026069.1_2685313_2685598_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP026069.1_2685772_2686516_+	pfam02517, Abi, CAAX protease self-immunity	NA|416aa|down_5|NZ_CP026069.1_2686540_2687788_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP026069.1_2687984_2688611_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP026069.1_2688971_2689757_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP026069.1_2690356_2690491_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP026069.1_2690726_2691290_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	9	2810699-2810779	9	CRISPRCasFinder	no	csa3	RT,WYL,cas3,DEDDh,csa3,DinG	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA|77aa|up_5|NZ_CP026069.1_2805573_2805804_-,NA|364aa|up_0|NZ_CP026069.1_2809590_2810682_+,NA|35aa|down_0|NZ_CP026069.1_2811114_2811219_-,NA|53aa|down_1|NZ_CP026069.1_2811898_2812057_+	NA|237aa|up_9|NZ_CP026069.1_2801184_2801895_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP026069.1_2802015_2802459_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP026069.1_2802658_2803072_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP026069.1_2803528_2804902_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP026069.1_2805573_2805804_-	NA	NA|313aa|up_4|NZ_CP026069.1_2805834_2806773_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP026069.1_2807208_2807874_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP026069.1_2808025_2808346_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP026069.1_2808347_2809325_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP026069.1_2809590_2810682_+	NA	NA|35aa|down_0|NZ_CP026069.1_2811114_2811219_-	NA	NA|53aa|down_1|NZ_CP026069.1_2811898_2812057_+	NA	NA|286aa|down_2|NZ_CP026069.1_2812714_2813572_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP026069.1_2813639_2814422_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP026069.1_2814653_2816459_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP026069.1_2817139_2818678_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP026069.1_2818712_2820845_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP026069.1_2820856_2821291_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP026069.1_2821290_2822397_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP026069.1_2822715_2830161_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_001019435.2_ASM101943v2	NZ_CP026069	Staphylococcus aureus strain FDAARGOS_25 chromosome, complete genome	10	2823020-2823105	10	CRISPRCasFinder	no	csa3	RT,WYL,cas3,DEDDh,csa3,DinG	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,csa3,DinG	NA|364aa|up_9|NZ_CP026069.1_2809590_2810682_+,NA|35aa|up_8|NZ_CP026069.1_2811114_2811219_-,NA|53aa|up_7|NZ_CP026069.1_2811898_2812057_+,NA	NA|364aa|up_9|NZ_CP026069.1_2809590_2810682_+	NA	NA|35aa|up_8|NZ_CP026069.1_2811114_2811219_-	NA	NA|53aa|up_7|NZ_CP026069.1_2811898_2812057_+	NA	NA|286aa|up_6|NZ_CP026069.1_2812714_2813572_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP026069.1_2813639_2814422_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP026069.1_2814653_2816459_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP026069.1_2817139_2818678_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP026069.1_2818712_2820845_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP026069.1_2820856_2821291_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP026069.1_2821290_2822397_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP026069.1_2830438_2831794_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP026069.1_2831820_2832753_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP026069.1_2832754_2833564_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP026069.1_2833752_2834661_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP026069.1_2840901_2841966_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP026069.1_2842113_2843556_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP026069.1_2843878_2844352_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|228aa|down_7|NZ_CP026069.1_2845750_2846434_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NZ_CP026069.1_2846452_2847640_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NZ_CP026069.1_2847683_2848199_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
