assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	1	115286-115378	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP026068.1_111769_111877_+,NA|169aa|down_4|NZ_CP026068.1_119125_119632_+,NA|239aa|down_5|NZ_CP026068.1_119793_120510_+	NA|313aa|up_9|NZ_CP026068.1_105971_106910_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP026068.1_107120_107657_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP026068.1_107825_108302_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP026068.1_108341_109637_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP026068.1_109664_110186_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP026068.1_110684_111695_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP026068.1_111769_111877_+	NA	NA|128aa|up_2|NZ_CP026068.1_112002_112386_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP026068.1_112382_114044_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP026068.1_114432_115068_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP026068.1_115506_116334_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP026068.1_116481_117432_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP026068.1_117486_118206_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP026068.1_118189_118990_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP026068.1_119125_119632_+	NA	NA|239aa|down_5|NZ_CP026068.1_119793_120510_+	NA	NA|263aa|down_6|NZ_CP026068.1_120678_121467_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP026068.1_121717_122092_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP026068.1_123039_123969_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP026068.1_124163_124388_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	2	178548-178646	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP026068.1_176575_176692_+,NA|230aa|down_2|NZ_CP026068.1_180467_181157_-,NA|100aa|down_5|NZ_CP026068.1_182326_182626_+	NA|336aa|up_9|NZ_CP026068.1_168355_169363_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP026068.1_169950_170748_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP026068.1_171108_171753_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP026068.1_172449_174600_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP026068.1_174745_175105_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP026068.1_175294_176011_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP026068.1_176010_176484_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP026068.1_176575_176692_+	NA	NA|215aa|up_1|NZ_CP026068.1_176836_177481_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP026068.1_177596_178463_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP026068.1_178663_179884_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP026068.1_179880_180369_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP026068.1_180467_181157_-	NA	NA|148aa|down_3|NZ_CP026068.1_181283_181727_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_CP026068.1_181793_182189_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_CP026068.1_182326_182626_+	NA	NA|181aa|down_6|NZ_CP026068.1_182705_183248_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP026068.1_183343_183910_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP026068.1_183911_184370_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP026068.1_184372_185056_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	3	320777-320858	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	320801-320834|320801-320834	NZ_CP026068.1_796002-795969|NZ_CP026068.1_884411-884444	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP026068.1_319679_319793_+,NA	NA|206aa|up_9|NZ_CP026068.1_314534_315152_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP026068.1_315306_315801_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP026068.1_316199_316622_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP026068.1_316769_317486_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP026068.1_317568_318108_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP026068.1_318257_318578_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP026068.1_318721_319078_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP026068.1_319235_319616_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP026068.1_319679_319793_+	NA	NA|293aa|up_0|NZ_CP026068.1_319794_320673_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP026068.1_321414_321801_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP026068.1_321793_322090_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP026068.1_322339_323365_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP026068.1_323357_324053_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP026068.1_324070_324892_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP026068.1_325245_325440_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP026068.1_325672_326524_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP026068.1_326851_327613_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP026068.1_327710_329018_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP026068.1_329123_330374_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	4	369632-369914	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	9	369662-369687|369662-369687|369662-369687|369662-369687|369662-369687|369662-369687|369662-369687|369776-369801|369776-369801	NZ_CP026068.1_277526-277501|NZ_CP026068.1_369606-369631|NZ_CP026068.1_240921-240946|NZ_CP026068.1_277582-277557|NZ_CP026068.1_587803-587828|NZ_CP026068.1_2155079-2155054|NZ_CP026068.1_2155135-2155110|NZ_CP026068.1_277638-277613|NZ_CP026068.1_2538936-2538961	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP026068.1_358520_360017_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP026068.1_360009_360339_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP026068.1_360350_360779_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP026068.1_360771_363177_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP026068.1_363307_363691_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP026068.1_363754_364348_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP026068.1_364763_365141_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP026068.1_365502_366630_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP026068.1_366937_368128_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP026068.1_368236_369481_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP026068.1_369983_370913_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP026068.1_371154_372534_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP026068.1_372523_373729_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP026068.1_374079_375411_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP026068.1_375735_376311_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP026068.1_376315_376840_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP026068.1_376855_377431_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP026068.1_377590_381067_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP026068.1_381067_384721_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP026068.1_384886_385789_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	5	503316-503403	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP026068.1_503192_503312_+,NA|45aa|down_0|NZ_CP026068.1_503412_503547_-,NA|432aa|down_1|NZ_CP026068.1_503698_504994_+	NA|730aa|up_9|NZ_CP026068.1_491770_493960_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP026068.1_493938_495423_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP026068.1_495415_496444_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP026068.1_496446_497013_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP026068.1_497027_498506_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP026068.1_498527_499775_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP026068.1_500039_500846_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP026068.1_500838_502239_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP026068.1_502253_502829_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP026068.1_503192_503312_+	NA	NA|45aa|down_0|NZ_CP026068.1_503412_503547_-	NA	NA|432aa|down_1|NZ_CP026068.1_503698_504994_+	NA	NA|391aa|down_2|NZ_CP026068.1_505418_506591_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP026068.1_506644_507187_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP026068.1_507340_507607_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP026068.1_507609_509328_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP026068.1_509564_509798_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP026068.1_509995_511357_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP026068.1_511353_512373_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP026068.1_512505_513168_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	6	1239661-1239871	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1239699-1239719|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239758-1239777|1239816-1239833	NZ_CP026068.1_1239640-1239660|NZ_CP026068.1_272075-272056|NZ_CP026068.1_272130-272111|NZ_CP026068.1_277735-277716|NZ_CP026068.1_277793-277774|NZ_CP026068.1_277851-277832|NZ_CP026068.1_320874-320855|NZ_CP026068.1_389332-389313|NZ_CP026068.1_513318-513299|NZ_CP026068.1_795870-795889|NZ_CP026068.1_884543-884524|NZ_CP026068.1_1060906-1060887|NZ_CP026068.1_1239585-1239604|NZ_CP026068.1_1397805-1397786|NZ_CP026068.1_1904208-1904227|NZ_CP026068.1_2155173-2155154|NZ_CP026068.1_2312973-2312992|NZ_CP026068.1_2456171-2456190|NZ_CP026068.1_2539067-2539086|NZ_CP026068.1_284941-284922|NZ_CP026068.1_587765-587784|NZ_CP026068.1_845215-845196|NZ_CP026068.1_1094872-1094853|NZ_CP026068.1_1407154-1407135|NZ_CP026068.1_2456225-2456244|NZ_CP026068.1_245521-245540|NZ_CP026068.1_1239643-1239660	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP026068.1_1230180_1230777_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP026068.1_1230805_1231663_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP026068.1_1231762_1232074_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP026068.1_1232138_1233215_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP026068.1_1233301_1233613_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP026068.1_1233737_1234580_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP026068.1_1235049_1235694_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP026068.1_1235708_1236500_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP026068.1_1237049_1237898_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP026068.1_1237901_1239311_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP026068.1_1240174_1240597_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP026068.1_1240613_1241309_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP026068.1_1241305_1242967_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP026068.1_1243373_1244642_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP026068.1_1244758_1251319_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP026068.1_1251661_1251973_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|805aa|down_6|NZ_CP026068.1_1251994_1254409_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP026068.1_1254699_1255881_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP026068.1_1255990_1256944_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP026068.1_1256940_1257504_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	7	1362199-1362326	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_8|NZ_CP026068.1_1352661_1353057_-,NA|51aa|up_7|NZ_CP026068.1_1353833_1353986_-,NA|31aa|down_5|NZ_CP026068.1_1375114_1375207_-	NA|462aa|up_9|NZ_CP026068.1_1351080_1352466_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_8|NZ_CP026068.1_1352661_1353057_-	NA	NA|51aa|up_7|NZ_CP026068.1_1353833_1353986_-	NA	NA|200aa|up_6|NZ_CP026068.1_1354010_1354610_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_5|NZ_CP026068.1_1354768_1355239_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_4|NZ_CP026068.1_1355243_1356386_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_3|NZ_CP026068.1_1356521_1357250_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_2|NZ_CP026068.1_1357236_1358694_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_1|NZ_CP026068.1_1358951_1360013_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|401aa|up_0|NZ_CP026068.1_1360505_1361708_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|down_0|NZ_CP026068.1_1370313_1370760_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP026068.1_1370856_1371807_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP026068.1_1371812_1372268_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP026068.1_1372348_1373638_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP026068.1_1373930_1375025_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|31aa|down_5|NZ_CP026068.1_1375114_1375207_-	NA	NA|579aa|down_6|NZ_CP026068.1_1375215_1376952_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_7|NZ_CP026068.1_1377242_1377785_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_8|NZ_CP026068.1_1378086_1379124_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|NZ_CP026068.1_1379275_1380253_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	8	1396356-1396434	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1396379-1396411|1396379-1396411|1396379-1396411|1396379-1396411|1396379-1396411|1396379-1396411	NZ_CP026068.1_277593-277625|NZ_CP026068.1_795956-795924|NZ_CP026068.1_1060936-1060968|NZ_CP026068.1_1989779-1989811|NZ_CP026068.1_277537-277569|NZ_CP026068.1_884457-884489	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP026068.1_1390550_1390826_+,NA|129aa|up_1|NZ_CP026068.1_1394811_1395198_-,NA|138aa|down_1|NZ_CP026068.1_1398117_1398531_-,NA|37aa|down_2|NZ_CP026068.1_1398559_1398670_-,NA|31aa|down_6|NZ_CP026068.1_1401675_1401768_-	NA|419aa|up_9|NZ_CP026068.1_1388473_1389730_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP026068.1_1389732_1389933_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP026068.1_1390079_1390544_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP026068.1_1390550_1390826_+	NA	NA|406aa|up_5|NZ_CP026068.1_1391103_1392321_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP026068.1_1392436_1393066_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP026068.1_1393055_1394099_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP026068.1_1394095_1394797_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP026068.1_1394811_1395198_-	NA	NA|253aa|up_0|NZ_CP026068.1_1395414_1396173_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP026068.1_1396700_1397687_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP026068.1_1398117_1398531_-	NA	NA|37aa|down_2|NZ_CP026068.1_1398559_1398670_-	NA	NA|244aa|down_3|NZ_CP026068.1_1398755_1399487_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP026068.1_1399488_1400802_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP026068.1_1401093_1401594_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP026068.1_1401675_1401768_-	NA	DEDDh|185aa|down_7|NZ_CP026068.1_1401982_1402537_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP026068.1_1402604_1403675_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP026068.1_1403921_1404452_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	9	1588437-1588526	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_4|NZ_CP026068.1_1583308_1583539_-,NA|364aa|up_0|NZ_CP026068.1_1587328_1588420_+,NA|35aa|down_0|NZ_CP026068.1_1588862_1588967_-,NA|31aa|down_2|NZ_CP026068.1_1591078_1591171_+	NA|221aa|up_9|NZ_CP026068.1_1577941_1578604_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|237aa|up_8|NZ_CP026068.1_1578918_1579629_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_7|NZ_CP026068.1_1579749_1580193_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_6|NZ_CP026068.1_1580392_1580806_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_5|NZ_CP026068.1_1581263_1582637_-	pfam01878, EVE, EVE domain	NA|77aa|up_4|NZ_CP026068.1_1583308_1583539_-	NA	NA|222aa|up_3|NZ_CP026068.1_1584943_1585609_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP026068.1_1585760_1586081_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP026068.1_1586082_1587063_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP026068.1_1587328_1588420_+	NA	NA|35aa|down_0|NZ_CP026068.1_1588862_1588967_-	NA	NA|379aa|down_1|NZ_CP026068.1_1589653_1590790_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP026068.1_1591078_1591171_+	NA	NA|286aa|down_3|NZ_CP026068.1_1591875_1592733_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP026068.1_1592800_1593583_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP026068.1_1593814_1595620_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP026068.1_1596300_1597839_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP026068.1_1597873_1600006_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP026068.1_1600017_1600452_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP026068.1_1600451_1601558_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	10	1712364-1712557	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	1712387-1712419|1712387-1712419|1712387-1712419|1712387-1712419|1712443-1712478|1712443-1712478|1712443-1712478|1712443-1712478|1712502-1712534|1712502-1712534|1712502-1712534|1712502-1712534|1712502-1712534	NZ_CP026068.1_277593-277625|NZ_CP026068.1_795956-795924|NZ_CP026068.1_884457-884489|NZ_CP026068.1_1989779-1989811|NZ_CP026068.1_587796-587761|NZ_CP026068.1_1239616-1239581|NZ_CP026068.1_1060875-1060910|NZ_CP026068.1_1407123-1407158|NZ_CP026068.1_277537-277569|NZ_CP026068.1_277481-277513|NZ_CP026068.1_277593-277625|NZ_CP026068.1_795956-795924|NZ_CP026068.1_1989779-1989811	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP026068.1_1702889_1703054_+,NA|106aa|up_8|NZ_CP026068.1_1703298_1703616_+,NA|84aa|up_5|NZ_CP026068.1_1708740_1708992_+,NA|57aa|up_0|NZ_CP026068.1_1712133_1712304_+,NA	NA|55aa|up_9|NZ_CP026068.1_1702889_1703054_+	NA	NA|106aa|up_8|NZ_CP026068.1_1703298_1703616_+	NA	NA|1056aa|up_7|NZ_CP026068.1_1703802_1706970_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP026068.1_1707086_1708352_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP026068.1_1708740_1708992_+	NA	NA|255aa|up_4|NZ_CP026068.1_1708983_1709748_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP026068.1_1709909_1710350_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP026068.1_1710342_1711554_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP026068.1_1711657_1712008_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP026068.1_1712133_1712304_+	NA	NA|341aa|down_0|NZ_CP026068.1_1712698_1713721_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP026068.1_1713740_1714340_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP026068.1_1714346_1714580_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP026068.1_1714585_1715032_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP026068.1_1715045_1715531_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP026068.1_1715527_1716787_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP026068.1_1716849_1717344_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP026068.1_1717345_1717852_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP026068.1_1717882_1718887_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP026068.1_1719056_1719662_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001019415.2_ASM101941v2	NZ_CP026068	Staphylococcus aureus strain FDAARGOS_24 chromosome, complete genome	11	2577549-2577649	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP026068.1_2569121_2569331_-,NA|128aa|up_7|NZ_CP026068.1_2570155_2570539_-,NA|98aa|up_5|NZ_CP026068.1_2571492_2571786_-,NA|34aa|up_0|NZ_CP026068.1_2576773_2576875_+,NA|221aa|down_1|NZ_CP026068.1_2578739_2579402_-,NA|179aa|down_7|NZ_CP026068.1_2585493_2586030_-	NA|70aa|up_9|NZ_CP026068.1_2569121_2569331_-	NA	NA|194aa|up_8|NZ_CP026068.1_2569508_2570090_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP026068.1_2570155_2570539_-	NA	NA|209aa|up_6|NZ_CP026068.1_2570793_2571420_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP026068.1_2571492_2571786_-	NA	NA|508aa|up_4|NZ_CP026068.1_2571864_2573388_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP026068.1_2573403_2573973_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP026068.1_2574464_2575220_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP026068.1_2575300_2576689_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP026068.1_2576773_2576875_+	NA	NA|319aa|down_0|NZ_CP026068.1_2577665_2578622_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP026068.1_2578739_2579402_-	NA	NA|136aa|down_2|NZ_CP026068.1_2579544_2579952_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP026068.1_2580464_2581043_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP026068.1_2581042_2582311_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP026068.1_2582348_2583815_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP026068.1_2583839_2585381_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP026068.1_2585493_2586030_-	NA	NA|235aa|down_8|NZ_CP026068.1_2586422_2587127_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP026068.1_2587525_2587798_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
