assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	1	109448-109532	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	109474-109506	NZ_CP026953.1_2674291-2674259	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA	NA|228aa|up_9|NZ_CP026953.1_98657_99341_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP026953.1_99584_99761_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP026953.1_100053_101400_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP026953.1_101406_102159_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP026953.1_102160_103099_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP026953.1_103102_104242_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP026953.1_104377_106210_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP026953.1_106278_106905_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP026953.1_106936_107914_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP026953.1_108014_109139_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP026953.1_109704_111528_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP026953.1_111873_112125_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP026953.1_112169_113144_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_CP026953.1_113200_115402_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP026953.1_115406_115868_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP026953.1_115959_116646_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP026953.1_116685_117402_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP026953.1_117404_117758_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP026953.1_117758_118343_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP026953.1_118332_118902_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	2	545985-546066	2	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,RT,WYL,DinG	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	546009-546042|546009-546042|546009-546042|546009-546042|546009-546042	NZ_CP026953.1_2110413-2110446|NZ_CP026953.1_2463957-2463924|NZ_CP026953.1_229504-229471|NZ_CP026953.1_1234451-1234484|NZ_CP026953.1_2678632-2678665	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|58aa|up_9|NZ_CP026953.1_536700_536874_-,NA|114aa|up_6|NZ_CP026953.1_538503_538845_+,NA|61aa|up_5|NZ_CP026953.1_539048_539231_+,NA	NA|58aa|up_9|NZ_CP026953.1_536700_536874_-	NA	NA|238aa|up_8|NZ_CP026953.1_536836_537550_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_7|NZ_CP026953.1_537565_538498_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_6|NZ_CP026953.1_538503_538845_+	NA	NA|61aa|up_5|NZ_CP026953.1_539048_539231_+	NA	NA|155aa|up_4|NZ_CP026953.1_539330_539795_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|346aa|up_3|NZ_CP026953.1_539853_540891_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP026953.1_542011_543028_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP026953.1_543049_544105_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP026953.1_544540_545764_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP026953.1_546207_547515_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP026953.1_548054_549671_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP026953.1_549746_550031_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP026953.1_550205_550949_+	pfam02517, Abi, CAAX protease self-immunity	NA|422aa|down_4|NZ_CP026953.1_550973_552239_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP026953.1_552435_553062_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP026953.1_553422_554208_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP026953.1_554807_554942_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP026953.1_555177_555741_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP026953.1_555743_555887_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	3	673468-673548	3	CRISPRCasFinder	no	csa3	cas3,csa3,DEDDh,RT,WYL,DinG	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|77aa|up_5|NZ_CP026953.1_668342_668573_-,NA|364aa|up_0|NZ_CP026953.1_672359_673451_+,NA|35aa|down_0|NZ_CP026953.1_673883_673988_-,NA|53aa|down_1|NZ_CP026953.1_674667_674826_+	NA|237aa|up_9|NZ_CP026953.1_663953_664664_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP026953.1_664784_665228_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP026953.1_665427_665841_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP026953.1_666297_667671_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP026953.1_668342_668573_-	NA	NA|313aa|up_4|NZ_CP026953.1_668603_669542_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP026953.1_669977_670643_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP026953.1_670794_671115_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP026953.1_671116_672094_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP026953.1_672359_673451_+	NA	NA|35aa|down_0|NZ_CP026953.1_673883_673988_-	NA	NA|53aa|down_1|NZ_CP026953.1_674667_674826_+	NA	NA|286aa|down_2|NZ_CP026953.1_675483_676341_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP026953.1_676408_677191_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP026953.1_677422_679228_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP026953.1_679908_681447_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP026953.1_681481_683614_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP026953.1_683625_684060_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP026953.1_684059_685166_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP026953.1_685484_692930_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	4	685789-685874	4	CRISPRCasFinder	no	csa3	cas3,csa3,DEDDh,RT,WYL,DinG	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|364aa|up_9|NZ_CP026953.1_672359_673451_+,NA|35aa|up_8|NZ_CP026953.1_673883_673988_-,NA|53aa|up_7|NZ_CP026953.1_674667_674826_+,NA	NA|364aa|up_9|NZ_CP026953.1_672359_673451_+	NA	NA|35aa|up_8|NZ_CP026953.1_673883_673988_-	NA	NA|53aa|up_7|NZ_CP026953.1_674667_674826_+	NA	NA|286aa|up_6|NZ_CP026953.1_675483_676341_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP026953.1_676408_677191_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP026953.1_677422_679228_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP026953.1_679908_681447_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP026953.1_681481_683614_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP026953.1_683625_684060_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP026953.1_684059_685166_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP026953.1_693207_694563_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP026953.1_694589_695522_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP026953.1_695523_696333_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP026953.1_696521_697430_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP026953.1_703670_704735_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP026953.1_704882_706325_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP026953.1_706647_707121_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP026953.1_707219_708563_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP026953.1_708739_709423_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP026953.1_709441_710629_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	5	793832-793912	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	14	793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887|793857-793887	NZ_CP026953.1_2122985-2123015|NZ_CP026953.1_124142-124112|NZ_CP026953.1_432983-433013|NZ_CP026953.1_783056-783086|NZ_CP026953.1_959070-959100|NZ_CP026953.1_1336454-1336484|NZ_CP026953.1_1678237-1678207|NZ_CP026953.1_1945638-1945608|NZ_CP026953.1_2159531-2159561|NZ_CP026953.1_2366818-2366848|NZ_CP026953.1_2366934-2366964|NZ_CP026953.1_2468091-2468061|NZ_CP026953.1_2674247-2674217|NZ_CP026953.1_2762592-2762622	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|55aa|up_9|NZ_CP026953.1_784365_784530_+,NA|106aa|up_8|NZ_CP026953.1_784774_785092_+,NA|84aa|up_5|NZ_CP026953.1_790213_790465_+,NA|62aa|up_0|NZ_CP026953.1_793604_793790_+,NA	NA|55aa|up_9|NZ_CP026953.1_784365_784530_+	NA	NA|106aa|up_8|NZ_CP026953.1_784774_785092_+	NA	NA|1056aa|up_7|NZ_CP026953.1_785275_788443_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP026953.1_788559_789825_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP026953.1_790213_790465_+	NA	NA|255aa|up_4|NZ_CP026953.1_790456_791221_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP026953.1_791382_791823_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP026953.1_791815_793027_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP026953.1_793128_793479_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP026953.1_793604_793790_+	NA	NA|341aa|down_0|NZ_CP026953.1_794055_795078_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP026953.1_795097_795697_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP026953.1_795703_795937_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP026953.1_795942_796389_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP026953.1_796402_796888_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP026953.1_796884_798144_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP026953.1_798206_798701_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP026953.1_798702_799209_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP026953.1_799239_800244_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP026953.1_800413_801019_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	6	1716945-1717046	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|70aa|up_8|NZ_CP026953.1_1708504_1708714_-,NA|128aa|up_6|NZ_CP026953.1_1709538_1709922_-,NA|33aa|up_0|NZ_CP026953.1_1716169_1716268_+,NA|221aa|down_1|NZ_CP026953.1_1718136_1718799_-,NA|179aa|down_7|NZ_CP026953.1_1724890_1725427_-	NA|84aa|up_9|NZ_CP026953.1_1708214_1708466_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP026953.1_1708504_1708714_-	NA	NA|194aa|up_7|NZ_CP026953.1_1708891_1709473_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP026953.1_1709538_1709922_-	NA	NA|209aa|up_5|NZ_CP026953.1_1710191_1710818_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP026953.1_1711261_1712785_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP026953.1_1712800_1713370_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP026953.1_1713861_1714617_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP026953.1_1714696_1716085_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP026953.1_1716169_1716268_+	NA	NA|319aa|down_0|NZ_CP026953.1_1717062_1718019_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP026953.1_1718136_1718799_-	NA	NA|136aa|down_2|NZ_CP026953.1_1718941_1719349_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP026953.1_1719861_1720440_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP026953.1_1720439_1721708_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP026953.1_1721745_1723212_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP026953.1_1723236_1724778_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP026953.1_1724890_1725427_-	NA	NA|235aa|down_8|NZ_CP026953.1_1725818_1726523_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP026953.1_1726921_1727194_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	7	2115821-2115907	7	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,RT,WYL,DinG	Unclear	TGTTGGGGCCCACACCCCAACTCGCATTG	29	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA	NA|280aa|up_9|NZ_CP026953.1_2103082_2103922_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP026953.1_2104095_2104746_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP026953.1_2104742_2104979_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP026953.1_2105247_2107233_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP026953.1_2107240_2110087_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP026953.1_2110695_2111628_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP026953.1_2111633_2112473_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP026953.1_2112480_2112966_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP026953.1_2112973_2114413_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP026953.1_2114479_2115415_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP026953.1_2116183_2117095_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP026953.1_2117091_2118087_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP026953.1_2118197_2119142_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP026953.1_2119705_2120293_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP026953.1_2120535_2121438_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP026953.1_2122140_2122770_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP026953.1_2123526_2124540_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP026953.1_2124592_2125603_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP026953.1_2125741_2126932_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP026953.1_2127053_2127815_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	8	2123011-2123090	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	CAGCTTCTGTGTTGGGGCCCCGCC	24	1	8	2123035-2123066|2123035-2123066|2123035-2123066|2123035-2123066|2123035-2123066|2123035-2123066|2123035-2123066|2123035-2123066	NZ_CP026953.1_124148-124117|NZ_CP026953.1_570097-570066|NZ_CP026953.1_959064-959095|NZ_CP026953.1_1336448-1336479|NZ_CP026953.1_2159525-2159556|NZ_CP026953.1_2674367-2674336|NZ_CP026953.1_2464140-2464109|NZ_CP026953.1_2464252-2464221	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA|153aa|down_6|NZ_CP026953.1_2131107_2131566_+	NA|280aa|up_9|NZ_CP026953.1_2111633_2112473_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP026953.1_2112480_2112966_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP026953.1_2112973_2114413_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP026953.1_2114479_2115415_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP026953.1_2116183_2117095_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP026953.1_2117091_2118087_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP026953.1_2118197_2119142_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP026953.1_2119705_2120293_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP026953.1_2120535_2121438_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP026953.1_2122140_2122770_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP026953.1_2123526_2124540_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP026953.1_2124592_2125603_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP026953.1_2125741_2126932_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP026953.1_2127053_2127815_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP026953.1_2127817_2129335_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP026953.1_2129464_2130769_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP026953.1_2131107_2131566_+	NA	NA|78aa|down_7|NZ_CP026953.1_2131632_2131866_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP026953.1_2131981_2132722_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP026953.1_2132755_2135128_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_001019205.2_ASM101920v2	NZ_CP026953	Staphylococcus aureus strain FDAARGOS_48 chromosome, complete genome	9	2159194-2159275	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	2159218-2159251	NZ_CP026953.1_2674291-2674258	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA	NA|194aa|up_9|NZ_CP026953.1_2152296_2152878_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP026953.1_2152950_2153568_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP026953.1_2153722_2154217_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP026953.1_2154615_2155038_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP026953.1_2155185_2155902_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP026953.1_2155984_2156524_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP026953.1_2156674_2156995_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP026953.1_2157138_2157495_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP026953.1_2157652_2158033_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP026953.1_2158211_2159090_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP026953.1_2159831_2160218_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP026953.1_2160210_2160507_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP026953.1_2160756_2161782_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP026953.1_2161774_2162470_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP026953.1_2162487_2163309_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP026953.1_2163662_2163857_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP026953.1_2164090_2164942_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP026953.1_2165269_2166031_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP026953.1_2166128_2167436_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP026953.1_2167541_2168792_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
