assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	1	120320-120409	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|52aa|down_2|NZ_CP026071.1_120962_121118_+,NA|68aa|down_3|NZ_CP026071.1_121102_121306_+,NA|128aa|down_4|NZ_CP026071.1_121307_121691_+,NA|127aa|down_8|NZ_CP026071.1_124976_125357_+	NA|188aa|up_9|NZ_CP026071.1_110685_111249_-	smart00793, AgrB, Accessory gene regulator B	NA|45aa|up_8|NZ_CP026071.1_111484_111619_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|NZ_CP026071.1_112221_113007_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|NZ_CP026071.1_113367_113994_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|405aa|up_5|NZ_CP026071.1_114190_115405_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_4|NZ_CP026071.1_115429_116173_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP026071.1_116347_116632_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|NZ_CP026071.1_116707_118324_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP026071.1_118392_119565_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP026071.1_119578_120253_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP026071.1_120425_120644_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP026071.1_120648_120966_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|52aa|down_2|NZ_CP026071.1_120962_121118_+	NA	NA|68aa|down_3|NZ_CP026071.1_121102_121306_+	NA	NA|128aa|down_4|NZ_CP026071.1_121307_121691_+	NA	NA|106aa|down_5|NZ_CP026071.1_121691_122009_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_6|NZ_CP026071.1_122072_122942_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|570aa|down_7|NZ_CP026071.1_122955_124665_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|127aa|down_8|NZ_CP026071.1_124976_125357_+	NA	NA|214aa|down_9|NZ_CP026071.1_125353_125995_+	pfam16560, SAPI, Putative mobile pathogenicity island
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	2	230970-231161	1	CRT	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	GGTGGGGCCCNCAACANAGANN	22	1	9	231049-231082|231049-231082|231049-231082|231049-231082|231049-231082|231049-231082|231049-231082|231049-231082|231049-231082	NZ_CP026071.1_454094-454061|NZ_CP026071.1_1148172-1148205|NZ_CP026071.1_1344919-1344886|NZ_CP026071.1_1407454-1407487|NZ_CP026071.1_1440691-1440658|NZ_CP026071.1_1880213-1880180|NZ_CP026071.1_1996062-1996029|NZ_CP026071.1_2588404-2588371|NZ_CP026071.1_2732072-2732105	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|49aa|up_0|NZ_CP026071.1_230518_230665_+,NA|31aa|down_5|NZ_CP026071.1_236546_236639_+,NA|37aa|down_9|NZ_CP026071.1_239644_239755_+	NA|101aa|up_9|NZ_CP026071.1_218699_219002_+	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_8|NZ_CP026071.1_219184_219877_+	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|731aa|up_7|NZ_CP026071.1_219873_222066_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|668aa|up_6|NZ_CP026071.1_222069_224073_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|400aa|up_5|NZ_CP026071.1_224085_225285_+	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|513aa|up_4|NZ_CP026071.1_225373_226912_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|101aa|up_3|NZ_CP026071.1_227278_227581_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|486aa|up_2|NZ_CP026071.1_227582_229040_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|476aa|up_1|NZ_CP026071.1_229052_230480_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|49aa|up_0|NZ_CP026071.1_230518_230665_+	NA	NA|316aa|down_0|NZ_CP026071.1_231302_232250_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|454aa|down_1|NZ_CP026071.1_232330_233692_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|down_2|NZ_CP026071.1_233861_234392_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|down_3|NZ_CP026071.1_234638_235709_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|down_4|NZ_CP026071.1_235775_236330_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|down_5|NZ_CP026071.1_236546_236639_+	NA	NA|167aa|down_6|NZ_CP026071.1_236720_237221_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|down_7|NZ_CP026071.1_237512_238826_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|down_8|NZ_CP026071.1_238827_239559_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|down_9|NZ_CP026071.1_239644_239755_+	NA
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	3	539869-539948	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCAACATAGAGAATTTCGTAAAGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|43aa|up_8|NZ_CP026071.1_532427_532556_+,NA|49aa|up_3|NZ_CP026071.1_535592_535739_+,NA	NA|589aa|up_9|NZ_CP026071.1_530328_532095_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_8|NZ_CP026071.1_532427_532556_+	NA	NA|258aa|up_7|NZ_CP026071.1_532555_533329_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|NZ_CP026071.1_533489_534764_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|NZ_CP026071.1_534848_535271_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP026071.1_535370_535553_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP026071.1_535592_535739_+	NA	NA|338aa|up_2|NZ_CP026071.1_535975_536989_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP026071.1_537298_538441_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP026071.1_538441_539560_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP026071.1_540241_540910_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP026071.1_540911_543389_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP026071.1_543731_546362_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP026071.1_546424_546685_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP026071.1_546688_547117_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP026071.1_547131_547440_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP026071.1_547724_548363_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP026071.1_548365_549289_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP026071.1_549300_550569_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP026071.1_550568_551192_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	4	997841-997933	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AGTTATCAATTTATTGATTACTGTTTCTTA	30	0	0	NA	NA	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|117aa|up_9|NZ_CP026071.1_987404_987755_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP026071.1_987857_988595_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP026071.1_988594_989098_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP026071.1_989285_989561_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP026071.1_989995_991363_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP026071.1_991388_991721_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|NZ_CP026071.1_991707_992958_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|NZ_CP026071.1_992957_996524_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|NZ_CP026071.1_996670_997402_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP026071.1_997517_997751_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP026071.1_998056_998791_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP026071.1_998783_999710_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|NZ_CP026071.1_999702_1000689_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|191aa|down_3|NZ_CP026071.1_1000693_1001266_-	PRK04424, PRK04424, transcription factor FapR	cas3|687aa|down_4|NZ_CP026071.1_1001468_1003529_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|549aa|down_5|NZ_CP026071.1_1003718_1005365_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_6|NZ_CP026071.1_1005379_1005754_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP026071.1_1006196_1006385_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_8|NZ_CP026071.1_1006765_1007407_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_9|NZ_CP026071.1_1007413_1008058_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	5	1349068-1349147	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GGGCCCCAACATAGAAGCTGACGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|417aa|up_9|NZ_CP026071.1_1339504_1340755_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP026071.1_1340860_1342168_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP026071.1_1342265_1343027_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP026071.1_1343354_1344206_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP026071.1_1344439_1344634_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP026071.1_1345332_1346154_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP026071.1_1346171_1346867_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP026071.1_1346859_1347885_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP026071.1_1348134_1348431_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP026071.1_1348423_1348810_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP026071.1_1349400_1350279_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP026071.1_1350456_1350837_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP026071.1_1350994_1351351_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP026071.1_1351494_1351815_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP026071.1_1351964_1352504_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP026071.1_1352586_1353303_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP026071.1_1353450_1353873_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP026071.1_1354271_1354766_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP026071.1_1354922_1355540_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|187aa|down_9|NZ_CP026071.1_1355612_1356173_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	6	1407468-1407552	5	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	1407494-1407526|1407494-1407526	NZ_CP026071.1_1174388-1174420|NZ_CP026071.1_2697817-2697785	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|33aa|down_1|NZ_CP026071.1_1409012_1409111_-	NA|312aa|up_9|NZ_CP026071.1_1394621_1395557_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_8|NZ_CP026071.1_1395623_1397063_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_7|NZ_CP026071.1_1397070_1397556_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|281aa|up_6|NZ_CP026071.1_1397563_1398406_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_5|NZ_CP026071.1_1398411_1399344_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|up_4|NZ_CP026071.1_1399954_1402801_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|up_3|NZ_CP026071.1_1402808_1404794_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|up_2|NZ_CP026071.1_1405062_1405299_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|up_1|NZ_CP026071.1_1405295_1405946_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|up_0|NZ_CP026071.1_1406119_1406959_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|370aa|down_0|NZ_CP026071.1_1407727_1408838_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|33aa|down_1|NZ_CP026071.1_1409012_1409111_-	NA	NA|844aa|down_2|NZ_CP026071.1_1409152_1411684_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_3|NZ_CP026071.1_1412097_1412670_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|225aa|down_4|NZ_CP026071.1_1412730_1413405_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas3|361aa|down_5|NZ_CP026071.1_1413397_1414480_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|289aa|down_6|NZ_CP026071.1_1414843_1415710_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|214aa|down_7|NZ_CP026071.1_1415853_1416495_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|352aa|down_8|NZ_CP026071.1_1416658_1417714_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|357aa|down_9|NZ_CP026071.1_1418031_1419102_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	7	1808008-1808163	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTGGTGTTGGTTGTGGCGATTGCGGTTGTACATTTGGTGAAGGCGG	46	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|103aa|up_9|NZ_CP026071.1_1797059_1797368_+,NA|496aa|up_8|NZ_CP026071.1_1797473_1798961_-,NA|40aa|up_4|NZ_CP026071.1_1802901_1803021_+,NA|51aa|down_5|NZ_CP026071.1_1813919_1814072_+,NA|179aa|down_7|NZ_CP026071.1_1816897_1817434_+	NA|103aa|up_9|NZ_CP026071.1_1797059_1797368_+	NA	NA|496aa|up_8|NZ_CP026071.1_1797473_1798961_-	NA	NA|233aa|up_7|NZ_CP026071.1_1798979_1799678_-	PRK13036, PRK13036, superantigen-like protein; Reviewed	NA|411aa|up_6|NZ_CP026071.1_1800060_1801293_-	cd17258, RMtype1_S_Sau13435ORF2165P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|519aa|up_5|NZ_CP026071.1_1801285_1802842_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|40aa|up_4|NZ_CP026071.1_1802901_1803021_+	NA	NA|228aa|up_3|NZ_CP026071.1_1803103_1803787_-	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|233aa|up_2|NZ_CP026071.1_1804149_1804848_-	PRK13345, PRK13345, superantigen-like protein; Reviewed	NA|232aa|up_1|NZ_CP026071.1_1805188_1805884_-	PRK13346, PRK13346, superantigen-like protein 7; Reviewed	NA|235aa|up_0|NZ_CP026071.1_1806330_1807035_-	PRK13035, PRK13035, superantigen-like protein 5; Reviewed	NA|344aa|down_0|NZ_CP026071.1_1808719_1809751_-	PRK13335, PRK13335, superantigen-like protein; Reviewed	NA|234aa|down_1|NZ_CP026071.1_1810038_1810740_-	PRK13041, PRK13041, superantigen-like protein; Reviewed	NA|227aa|down_2|NZ_CP026071.1_1811022_1811703_-	PRK13037, PRK13037, superantigen-like protein; Reviewed	NA|282aa|down_3|NZ_CP026071.1_1812174_1813020_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|120aa|down_4|NZ_CP026071.1_1813038_1813398_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|51aa|down_5|NZ_CP026071.1_1813919_1814072_+	NA	NA|109aa|down_6|NZ_CP026071.1_1814329_1814656_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|179aa|down_7|NZ_CP026071.1_1816897_1817434_+	NA	NA|514aa|down_8|NZ_CP026071.1_1817963_1819505_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|down_9|NZ_CP026071.1_1819529_1820996_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	8	2492587-2492845	2,6	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA,GCCAACACCACCGACACCAGAGGTACCA	17,28	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|67aa|up_0|NZ_CP026071.1_2489873_2490074_+,NA|103aa|down_2|NZ_CP026071.1_2495941_2496250_-,NA|89aa|down_3|NZ_CP026071.1_2496393_2496660_-,NA|41aa|down_9|NZ_CP026071.1_2504981_2505104_-	NA|204aa|up_9|NZ_CP026071.1_2478707_2479319_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP026071.1_2479869_2481147_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP026071.1_2481623_2483447_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP026071.1_2483585_2484002_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP026071.1_2484232_2484925_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|244aa|up_4|NZ_CP026071.1_2485089_2485821_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP026071.1_2486007_2486688_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP026071.1_2486712_2488266_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP026071.1_2488382_2489741_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_0|NZ_CP026071.1_2489873_2490074_+	NA	NA|523aa|down_0|NZ_CP026071.1_2493144_2494712_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|289aa|down_1|NZ_CP026071.1_2494948_2495815_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_2|NZ_CP026071.1_2495941_2496250_-	NA	NA|89aa|down_3|NZ_CP026071.1_2496393_2496660_-	NA	NA|603aa|down_4|NZ_CP026071.1_2496943_2498752_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_5|NZ_CP026071.1_2498868_2499261_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_6|NZ_CP026071.1_2499262_2502124_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|258aa|down_7|NZ_CP026071.1_2502430_2503204_+	pfam04507, DUF576, Csa1 family	NA|265aa|down_8|NZ_CP026071.1_2504183_2504978_+	pfam04507, DUF576, Csa1 family	NA|41aa|down_9|NZ_CP026071.1_2504981_2505104_-	NA
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	9	2574763-2574867	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCATAAGCCTTTCTAGCTCATAAAATCCGCAGAAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_0|NZ_CP026071.1_2574403_2574508_+,NA|35aa|down_2|NZ_CP026071.1_2577039_2577144_-	NA|453aa|up_9|NZ_CP026071.1_2564361_2565720_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP026071.1_2565721_2566729_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP026071.1_2566706_2567822_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP026071.1_2567832_2568525_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP026071.1_2568535_2569003_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP026071.1_2569054_2570032_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP026071.1_2570033_2570981_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP026071.1_2571530_2572460_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP026071.1_2572995_2574309_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP026071.1_2574403_2574508_+	NA	NA|289aa|down_0|NZ_CP026071.1_2575007_2575874_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP026071.1_2576200_2576887_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP026071.1_2577039_2577144_-	NA	NA|480aa|down_3|NZ_CP026071.1_2577317_2578757_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP026071.1_2578877_2579657_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP026071.1_2579637_2580357_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP026071.1_2580353_2581085_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP026071.1_2581181_2582432_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP026071.1_2582686_2583049_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP026071.1_2583067_2583667_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	10	2731989-2732069	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTGGCGGGGCCCCAACATAGA	25	1	4	2732014-2732044|2732014-2732044|2732014-2732044|2732014-2732044	NZ_CP026071.1_573976-574006|NZ_CP026071.1_1148112-1148142|NZ_CP026071.1_241668-241698|NZ_CP026071.1_1394106-1394136	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP026071.1_2732125_2732296_-,NA|84aa|down_5|NZ_CP026071.1_2735436_2735688_-,NA|106aa|down_8|NZ_CP026071.1_2740812_2741130_-,NA|55aa|down_9|NZ_CP026071.1_2741374_2741539_-	NA|202aa|up_9|NZ_CP026071.1_2724885_2725491_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP026071.1_2725658_2726663_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP026071.1_2726691_2727198_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP026071.1_2727199_2727694_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP026071.1_2727756_2729016_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP026071.1_2729012_2729498_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP026071.1_2729511_2729958_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP026071.1_2729963_2730197_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP026071.1_2730203_2730803_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP026071.1_2730822_2731845_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP026071.1_2732125_2732296_-	NA	NA|117aa|down_1|NZ_CP026071.1_2732421_2732772_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP026071.1_2732873_2734085_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP026071.1_2734077_2734518_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP026071.1_2734680_2735445_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP026071.1_2735436_2735688_-	NA	NA|422aa|down_6|NZ_CP026071.1_2736076_2737342_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP026071.1_2737458_2740626_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP026071.1_2740812_2741130_-	NA	NA|55aa|down_9|NZ_CP026071.1_2741374_2741539_-	NA
GCF_001018975.2_ASM101897v2	NZ_CP026071	Staphylococcus aureus strain FDAARGOS_30 chromosome, complete genome	11	2771951-2772076	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGG	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|61aa|down_1|NZ_CP026071.1_2772970_2773153_+,NA|56aa|down_8|NZ_CP026071.1_2781501_2781669_-	NA|315aa|up_9|NZ_CP026071.1_2762223_2763168_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_8|NZ_CP026071.1_2763184_2763553_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|523aa|up_7|NZ_CP026071.1_2763805_2765373_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|270aa|up_6|NZ_CP026071.1_2765748_2766558_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP026071.1_2766554_2767415_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP026071.1_2767404_2768211_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|265aa|up_3|NZ_CP026071.1_2768215_2769010_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP026071.1_2769258_2769696_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP026071.1_2769709_2770108_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP026071.1_2770456_2771893_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|60aa|down_0|NZ_CP026071.1_2772141_2772321_+	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|61aa|down_1|NZ_CP026071.1_2772970_2773153_+	NA	NA|555aa|down_2|NZ_CP026071.1_2773622_2775287_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP026071.1_2775323_2776028_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP026071.1_2776418_2776844_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP026071.1_2777138_2777954_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|285aa|down_6|NZ_CP026071.1_2778164_2779019_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|809aa|down_7|NZ_CP026071.1_2779078_2781505_-	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|56aa|down_8|NZ_CP026071.1_2781501_2781669_-	NA	NA|139aa|down_9|NZ_CP026071.1_2781911_2782328_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
