assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	1	108296-108374	1	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	6	108319-108351|108319-108351|108319-108351|108319-108351|108319-108351|108319-108351	NZ_CP026080.1_443855-443887|NZ_CP026080.1_708899-708867|NZ_CP026080.1_1227198-1227230|NZ_CP026080.1_1227254-1227286|NZ_CP026080.1_2212560-2212592|NZ_CP026080.1_620334-620366	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_6|NZ_CP026080.1_102961_103054_+,NA|37aa|up_2|NZ_CP026080.1_106059_106170_+,NA|138aa|up_1|NZ_CP026080.1_106198_106612_+,NA|129aa|down_1|NZ_CP026080.1_109531_109918_+,NA|92aa|down_6|NZ_CP026080.1_113903_114179_-	NA|177aa|up_9|NZ_CP026080.1_100277_100808_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP026080.1_101054_102125_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP026080.1_102192_102747_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP026080.1_102961_103054_+	NA	NA|167aa|up_5|NZ_CP026080.1_103135_103636_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP026080.1_103927_105241_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP026080.1_105242_105974_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP026080.1_106059_106170_+	NA	NA|138aa|up_1|NZ_CP026080.1_106198_106612_+	NA	NA|329aa|up_0|NZ_CP026080.1_107042_108029_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP026080.1_108556_109315_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP026080.1_109531_109918_+	NA	NA|234aa|down_2|NZ_CP026080.1_109932_110634_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP026080.1_110630_111674_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP026080.1_111663_112293_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP026080.1_112408_113626_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP026080.1_113903_114179_-	NA	NA|155aa|down_7|NZ_CP026080.1_114185_114650_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP026080.1_114796_114997_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP026080.1_114999_116256_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	2	264949-265158	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTGTTGGGGCCCTTACCCCAACTTGCACATTATTGANNN	40	3	25	264986-265007|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265045-265062|265100-265121	NZ_CP026080.1_265159-265180|NZ_CP026080.1_106940-106923|NZ_CP026080.1_265218-265235|NZ_CP026080.1_443932-443915|NZ_CP026080.1_620295-620278|NZ_CP026080.1_708938-708955|NZ_CP026080.1_991520-991503|NZ_CP026080.1_1115506-1115489|NZ_CP026080.1_1183964-1183947|NZ_CP026080.1_1226987-1226970|NZ_CP026080.1_1227045-1227028|NZ_CP026080.1_1227103-1227086|NZ_CP026080.1_1663289-1663306|NZ_CP026080.1_1889383-1889400|NZ_CP026080.1_2298148-2298165|NZ_CP026080.1_97591-97574|NZ_CP026080.1_409966-409949|NZ_CP026080.1_659623-659606|NZ_CP026080.1_704529-704512|NZ_CP026080.1_917043-917060|NZ_CP026080.1_1219897-1219880|NZ_CP026080.1_1746131-1746148|NZ_CP026080.1_162706-162689|NZ_CP026080.1_1259287-1259304|NZ_CP026080.1_265159-265180	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|188aa|up_9|NZ_CP026080.1_247313_247877_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|up_8|NZ_CP026080.1_247873_248827_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|394aa|up_7|NZ_CP026080.1_248936_250118_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|up_6|NZ_CP026080.1_250408_252823_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|up_5|NZ_CP026080.1_252844_253156_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|2187aa|up_4|NZ_CP026080.1_253498_260059_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|423aa|up_3|NZ_CP026080.1_260175_261444_-	pfam03486, HI0933_like, HI0933-like protein	NA|554aa|up_2|NZ_CP026080.1_261850_263512_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|232aa|up_1|NZ_CP026080.1_263508_264204_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|141aa|up_0|NZ_CP026080.1_264220_264643_+	pfam12732, YtxH, YtxH-like protein	NA|470aa|down_0|NZ_CP026080.1_265506_266916_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|283aa|down_1|NZ_CP026080.1_266919_267768_+	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|264aa|down_2|NZ_CP026080.1_268317_269109_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|215aa|down_3|NZ_CP026080.1_269123_269768_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|281aa|down_4|NZ_CP026080.1_270237_271080_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|104aa|down_5|NZ_CP026080.1_271204_271516_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|down_6|NZ_CP026080.1_271602_272679_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|down_7|NZ_CP026080.1_272743_273055_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|286aa|down_8|NZ_CP026080.1_273154_274012_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|199aa|down_9|NZ_CP026080.1_274040_274637_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	3	920915-921171	2,2	CRISPRCasFinder,CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTGCA,CCCCGCCAACTTGCANNNT	27,19	3	9	920942-920970|920942-920970|920942-920970|920942-920970|920942-920970|920942-920970|920942-920970|920998-921027|921116-921152	NZ_CP026080.1_708867-708895|NZ_CP026080.1_916975-917003|NZ_CP026080.1_1017788-1017760|NZ_CP026080.1_1227230-1227202|NZ_CP026080.1_1227286-1227258|NZ_CP026080.1_1227342-1227314|NZ_CP026080.1_2212592-2212564|NZ_CP026080.1_921167-921196|NZ_CP026080.1_36020-35984	NA:NA	2,4	4	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|75aa|up_4|NZ_CP026080.1_917232_917457_-,NA|49aa|up_3|NZ_CP026080.1_917413_917560_-,NA|78aa|up_1|NZ_CP026080.1_919668_919902_+,NA|62aa|up_0|NZ_CP026080.1_920523_920709_+,NA|169aa|down_2|NZ_CP026080.1_922790_923297_-,NA|31aa|down_4|NZ_CP026080.1_924329_924422_+,NA|56aa|down_6|NZ_CP026080.1_925261_925429_-	NA|311aa|up_9|NZ_CP026080.1_912025_912958_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP026080.1_912980_913982_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP026080.1_914419_915145_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP026080.1_915239_915965_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP026080.1_916072_916789_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP026080.1_917232_917457_-	NA	NA|49aa|up_3|NZ_CP026080.1_917413_917560_-	NA	NA|320aa|up_2|NZ_CP026080.1_918232_919192_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP026080.1_919668_919902_+	NA	NA|62aa|up_0|NZ_CP026080.1_920523_920709_+	NA	NA|117aa|down_0|NZ_CP026080.1_921530_921881_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP026080.1_922034_922532_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP026080.1_922790_923297_-	NA	NA|134aa|down_3|NZ_CP026080.1_923968_924370_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_4|NZ_CP026080.1_924329_924422_+	NA	NA|110aa|down_5|NZ_CP026080.1_924738_925068_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP026080.1_925261_925429_-	NA	NA|168aa|down_7|NZ_CP026080.1_925556_926060_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP026080.1_926052_926640_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP026080.1_926651_927452_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	4	1134909-1135217	3,3	CRT,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	7	1135022-1135047|1135022-1135047|1135022-1135047|1135136-1135161|1135136-1135161|1135136-1135161|1135162-1135194	NZ_CP026080.1_1227210-1227185|NZ_CP026080.1_1227266-1227241|NZ_CP026080.1_1663410-1663435|NZ_CP026080.1_1227322-1227297|NZ_CP026080.1_916995-917020|NZ_CP026080.1_1263877-1263902|NZ_CP026080.1_1183717-1183685	NA:NA	4,1	4	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP026080.1_1119033_1119936_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP026080.1_1120101_1123755_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP026080.1_1123755_1127232_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP026080.1_1127391_1127967_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP026080.1_1127982_1128507_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP026080.1_1128511_1129087_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP026080.1_1129411_1130743_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP026080.1_1131093_1132299_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP026080.1_1132288_1133668_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP026080.1_1133909_1134839_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP026080.1_1135341_1136586_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP026080.1_1136694_1137885_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP026080.1_1138192_1139320_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP026080.1_1139681_1140059_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP026080.1_1140474_1141068_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP026080.1_1141131_1141515_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP026080.1_1141645_1144051_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP026080.1_1144043_1144472_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP026080.1_1144483_1144813_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP026080.1_1144805_1146302_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	5	1183965-1184046	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1183989-1184022|1183989-1184022	NZ_CP026080.1_620379-620412|NZ_CP026080.1_708854-708821	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|38aa|down_1|NZ_CP026080.1_1185029_1185143_-	NA|417aa|up_9|NZ_CP026080.1_1174448_1175699_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP026080.1_1175804_1177112_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP026080.1_1177209_1177971_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP026080.1_1178298_1179150_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP026080.1_1179382_1179577_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP026080.1_1179930_1180752_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP026080.1_1180769_1181465_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP026080.1_1181457_1182483_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP026080.1_1182732_1183029_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP026080.1_1183021_1183408_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP026080.1_1184149_1185028_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP026080.1_1185029_1185143_-	NA	NA|127aa|down_2|NZ_CP026080.1_1185206_1185587_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP026080.1_1185744_1186101_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP026080.1_1186244_1186565_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP026080.1_1186714_1187254_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP026080.1_1187336_1188053_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP026080.1_1188200_1188623_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP026080.1_1189021_1189516_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP026080.1_1189670_1190288_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	6	1326177-1326275	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCTTTTAATTTATTAATTAGGGGCTCTT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|100aa|up_5|NZ_CP026080.1_1322196_1322496_-,NA|230aa|up_2|NZ_CP026080.1_1323665_1324355_+,NA|39aa|down_2|NZ_CP026080.1_1328130_1328247_-	NA|228aa|up_9|NZ_CP026080.1_1319766_1320450_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|153aa|up_8|NZ_CP026080.1_1320452_1320911_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_7|NZ_CP026080.1_1320912_1321479_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|181aa|up_6|NZ_CP026080.1_1321574_1322117_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|100aa|up_5|NZ_CP026080.1_1322196_1322496_-	NA	NA|132aa|up_4|NZ_CP026080.1_1322633_1323029_-	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|148aa|up_3|NZ_CP026080.1_1323095_1323539_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|up_2|NZ_CP026080.1_1323665_1324355_+	NA	NA|163aa|up_1|NZ_CP026080.1_1324453_1324942_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|up_0|NZ_CP026080.1_1324938_1326159_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|289aa|down_0|NZ_CP026080.1_1326359_1327226_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|down_1|NZ_CP026080.1_1327341_1327986_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|39aa|down_2|NZ_CP026080.1_1328130_1328247_-	NA	NA|158aa|down_3|NZ_CP026080.1_1328338_1328812_-	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_4|NZ_CP026080.1_1328811_1329528_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_5|NZ_CP026080.1_1329717_1330077_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|717aa|down_6|NZ_CP026080.1_1330222_1332373_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|215aa|down_7|NZ_CP026080.1_1333069_1333714_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|266aa|down_8|NZ_CP026080.1_1334074_1334872_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|336aa|down_9|NZ_CP026080.1_1335459_1336467_-	pfam01384, PHO4, Phosphate transporter family
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	7	1389443-1389535	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|NZ_CP026080.1_1384310_1385027_-,NA|169aa|up_4|NZ_CP026080.1_1385188_1385695_-,NA|36aa|down_3|NZ_CP026080.1_1392943_1393051_-	NA|75aa|up_9|NZ_CP026080.1_1380432_1380657_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP026080.1_1380851_1381781_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP026080.1_1382728_1383103_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP026080.1_1383353_1384142_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP026080.1_1384310_1385027_-	NA	NA|169aa|up_4|NZ_CP026080.1_1385188_1385695_-	NA	NA|267aa|up_3|NZ_CP026080.1_1385830_1386631_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP026080.1_1386614_1387334_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP026080.1_1387388_1388339_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP026080.1_1388486_1389314_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP026080.1_1389752_1390388_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP026080.1_1390776_1392438_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP026080.1_1392434_1392818_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP026080.1_1392943_1393051_-	NA	NA|337aa|down_4|NZ_CP026080.1_1393125_1394136_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP026080.1_1394634_1395156_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP026080.1_1395183_1396479_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP026080.1_1396518_1396995_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP026080.1_1397163_1397700_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP026080.1_1397910_1398849_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	8	1624722-1624823	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|179aa|up_7|NZ_CP026080.1_1616340_1616877_+,NA|221aa|up_1|NZ_CP026080.1_1622968_1623631_+,NA|34aa|down_0|NZ_CP026080.1_1625495_1625597_-,NA|98aa|down_5|NZ_CP026080.1_1630584_1630878_+,NA|128aa|down_7|NZ_CP026080.1_1631831_1632215_+,NA|70aa|down_9|NZ_CP026080.1_1633039_1633249_+	NA|91aa|up_9|NZ_CP026080.1_1614572_1614845_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP026080.1_1615243_1615948_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP026080.1_1616340_1616877_+	NA	NA|514aa|up_6|NZ_CP026080.1_1616989_1618531_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP026080.1_1618555_1620022_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP026080.1_1620059_1621328_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP026080.1_1621327_1621906_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP026080.1_1622418_1622826_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP026080.1_1622968_1623631_+	NA	NA|319aa|up_0|NZ_CP026080.1_1623748_1624705_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP026080.1_1625495_1625597_-	NA	NA|463aa|down_1|NZ_CP026080.1_1625681_1627070_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP026080.1_1627150_1627906_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP026080.1_1628397_1628967_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP026080.1_1628982_1630506_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_5|NZ_CP026080.1_1630584_1630878_+	NA	NA|209aa|down_6|NZ_CP026080.1_1630950_1631577_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP026080.1_1631831_1632215_+	NA	NA|194aa|down_8|NZ_CP026080.1_1632280_1632862_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP026080.1_1633039_1633249_+	NA
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	9	2047177-2047350	1,8	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	20	2047230-2047246|2047230-2047246|2047230-2047246|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315|2047300-2047315	NZ_CP026080.1_1232691-1232707|NZ_CP026080.1_1232746-1232762|NZ_CP026080.1_1746202-1746186|NZ_CP026080.1_97473-97488|NZ_CP026080.1_97531-97546|NZ_CP026080.1_620351-620366|NZ_CP026080.1_704470-704485|NZ_CP026080.1_708882-708867|NZ_CP026080.1_916990-916975|NZ_CP026080.1_1017773-1017788|NZ_CP026080.1_1183692-1183707|NZ_CP026080.1_1227215-1227230|NZ_CP026080.1_1227271-1227286|NZ_CP026080.1_1227327-1227342|NZ_CP026080.1_2212577-2212592|NZ_CP026080.1_443872-443887|NZ_CP026080.1_662820-662835|NZ_CP026080.1_1263816-1263801|NZ_CP026080.1_1663405-1663390|NZ_CP026080.1_2400336-2400351	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|60aa|up_1|NZ_CP026080.1_2044136_2044316_+,NA	NA|205aa|up_9|NZ_CP026080.1_2037854_2038469_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP026080.1_2038461_2039712_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP026080.1_2039727_2040741_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP026080.1_2040709_2041288_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP026080.1_2041284_2041863_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP026080.1_2041855_2042560_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP026080.1_2042556_2043315_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP026080.1_2043311_2043944_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP026080.1_2044136_2044316_+	NA	NA|681aa|up_0|NZ_CP026080.1_2045036_2047079_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP026080.1_2047525_2048578_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP026080.1_2048564_2049437_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP026080.1_2049433_2049739_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP026080.1_2049702_2050941_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP026080.1_2051104_2051665_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP026080.1_2052513_2053176_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP026080.1_2053192_2053885_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP026080.1_2053881_2054649_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP026080.1_2054883_2055384_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP026080.1_2055386_2055863_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	10	2489814-2490007	4	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	14	2489837-2489869|2489837-2489869|2489837-2489869|2489837-2489869|2489837-2489869|2489893-2489928|2489893-2489928|2489893-2489928|2489893-2489928|2489952-2489984|2489952-2489984|2489952-2489984|2489952-2489984|2489952-2489984	NZ_CP026080.1_708899-708867|NZ_CP026080.1_1227198-1227230|NZ_CP026080.1_1227254-1227286|NZ_CP026080.1_1227310-1227342|NZ_CP026080.1_2212560-2212592|NZ_CP026080.1_917062-917027|NZ_CP026080.1_265237-265202|NZ_CP026080.1_97572-97607|NZ_CP026080.1_443913-443948|NZ_CP026080.1_620334-620366|NZ_CP026080.1_708899-708867|NZ_CP026080.1_1227198-1227230|NZ_CP026080.1_1227254-1227286|NZ_CP026080.1_2212560-2212592	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP026080.1_2490066_2490237_-,NA|84aa|down_5|NZ_CP026080.1_2493378_2493630_-,NA|106aa|down_8|NZ_CP026080.1_2498754_2499072_-,NA|55aa|down_9|NZ_CP026080.1_2499316_2499481_-	NA|202aa|up_9|NZ_CP026080.1_2482708_2483314_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP026080.1_2483483_2484488_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP026080.1_2484518_2485025_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP026080.1_2485026_2485521_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP026080.1_2485583_2486843_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP026080.1_2486839_2487325_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP026080.1_2487338_2487785_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP026080.1_2487790_2488024_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP026080.1_2488030_2488630_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP026080.1_2488649_2489672_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP026080.1_2490066_2490237_-	NA	NA|117aa|down_1|NZ_CP026080.1_2490362_2490713_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP026080.1_2490816_2492028_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP026080.1_2492020_2492461_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP026080.1_2492622_2493387_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP026080.1_2493378_2493630_-	NA	NA|422aa|down_6|NZ_CP026080.1_2494018_2495284_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP026080.1_2495400_2498568_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP026080.1_2498754_2499072_-	NA	NA|55aa|down_9|NZ_CP026080.1_2499316_2499481_-	NA
GCF_001018735.2_ASM101873v2	NZ_CP026080	Staphylococcus aureus strain FDAARGOS_12 chromosome, complete genome	11	2613844-2613934	9	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_2|NZ_CP026080.1_2611199_2611292_-,NA|35aa|up_0|NZ_CP026080.1_2613403_2613508_+,NA|364aa|down_0|NZ_CP026080.1_2613950_2615042_-,NA|77aa|down_4|NZ_CP026080.1_2618831_2619062_+	NA|369aa|up_9|NZ_CP026080.1_2600812_2601919_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP026080.1_2601918_2602353_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP026080.1_2602364_2604497_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP026080.1_2604531_2606070_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP026080.1_2606750_2608556_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP026080.1_2608787_2609570_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP026080.1_2609637_2610495_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP026080.1_2611199_2611292_-	NA	NA|379aa|up_1|NZ_CP026080.1_2611580_2612717_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP026080.1_2613403_2613508_+	NA	NA|364aa|down_0|NZ_CP026080.1_2613950_2615042_-	NA	NA|327aa|down_1|NZ_CP026080.1_2615307_2616288_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP026080.1_2616289_2616610_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP026080.1_2616761_2617427_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|77aa|down_4|NZ_CP026080.1_2618831_2619062_+	NA	NA|458aa|down_5|NZ_CP026080.1_2619733_2621107_+	pfam01878, EVE, EVE domain	NA|138aa|down_6|NZ_CP026080.1_2621564_2621978_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_7|NZ_CP026080.1_2622177_2622621_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_8|NZ_CP026080.1_2622741_2623452_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|221aa|down_9|NZ_CP026080.1_2623766_2624429_+	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional
