assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	1	37434-37512	1	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,WYL,cas3,DinG	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	37457-37489|37457-37489|37457-37489|37457-37489|37457-37489|37457-37489	NZ_CP026961.1_673578-673610|NZ_CP026961.1_1658885-1658917|NZ_CP026961.1_1658941-1658973|NZ_CP026961.1_2301857-2301825|NZ_CP026961.1_2612869-2612901|NZ_CP026961.1_2524368-2524336	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|92aa|up_6|NZ_CP026961.1_31628_31904_+,NA|129aa|up_1|NZ_CP026961.1_35889_36276_-,NA|138aa|down_1|NZ_CP026961.1_39195_39609_-,NA|37aa|down_2|NZ_CP026961.1_39637_39748_-,NA|31aa|down_6|NZ_CP026961.1_42753_42846_-	NA|419aa|up_9|NZ_CP026961.1_29551_30808_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP026961.1_30810_31011_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP026961.1_31157_31622_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP026961.1_31628_31904_+	NA	NA|406aa|up_5|NZ_CP026961.1_32181_33399_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP026961.1_33514_34144_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP026961.1_34133_35177_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP026961.1_35173_35875_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP026961.1_35889_36276_-	NA	NA|253aa|up_0|NZ_CP026961.1_36492_37251_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP026961.1_37778_38765_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP026961.1_39195_39609_-	NA	NA|37aa|down_2|NZ_CP026961.1_39637_39748_-	NA	NA|244aa|down_3|NZ_CP026961.1_39833_40565_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP026961.1_40566_41880_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP026961.1_42171_42672_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP026961.1_42753_42846_-	NA	DEDDh|185aa|down_7|NZ_CP026961.1_43060_43615_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP026961.1_43682_44753_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP026961.1_44999_45530_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	2	272236-272325	2	CRISPRCasFinder	no	csa3	DEDDh,csa3,WYL,cas3,DinG	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|77aa|up_4|NZ_CP026961.1_267107_267338_-,NA|364aa|up_0|NZ_CP026961.1_271127_272219_+,NA|35aa|down_0|NZ_CP026961.1_272661_272766_-,NA|31aa|down_2|NZ_CP026961.1_274877_274970_+	NA|221aa|up_9|NZ_CP026961.1_261740_262403_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|237aa|up_8|NZ_CP026961.1_262717_263428_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_7|NZ_CP026961.1_263548_263992_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_6|NZ_CP026961.1_264191_264605_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_5|NZ_CP026961.1_265062_266436_-	pfam01878, EVE, EVE domain	NA|77aa|up_4|NZ_CP026961.1_267107_267338_-	NA	NA|222aa|up_3|NZ_CP026961.1_268742_269408_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP026961.1_269559_269880_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP026961.1_269881_270862_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP026961.1_271127_272219_+	NA	NA|35aa|down_0|NZ_CP026961.1_272661_272766_-	NA	NA|379aa|down_1|NZ_CP026961.1_273452_274589_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP026961.1_274877_274970_+	NA	NA|286aa|down_3|NZ_CP026961.1_275674_276532_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP026961.1_276599_277382_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP026961.1_277613_279419_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP026961.1_280099_281638_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP026961.1_281672_283805_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP026961.1_283816_284251_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP026961.1_284250_285357_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	3	396163-396356	1	CRT	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	14	396186-396218|396186-396218|396186-396218|396186-396218|396186-396218|396242-396277|396242-396277|396242-396277|396242-396277|396301-396333|396301-396333|396301-396333|396301-396333|396301-396333	NZ_CP026961.1_673578-673610|NZ_CP026961.1_1658885-1658917|NZ_CP026961.1_1658941-1658973|NZ_CP026961.1_2524368-2524336|NZ_CP026961.1_2612869-2612901|NZ_CP026961.1_2821029-2821064|NZ_CP026961.1_2123177-2123212|NZ_CP026961.1_48201-48236|NZ_CP026961.1_2301918-2301883|NZ_CP026961.1_673578-673610|NZ_CP026961.1_1658829-1658861|NZ_CP026961.1_1658885-1658917|NZ_CP026961.1_1658941-1658973|NZ_CP026961.1_2612869-2612901	NA	3	3	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|55aa|up_9|NZ_CP026961.1_386688_386853_+,NA|106aa|up_8|NZ_CP026961.1_387097_387415_+,NA|84aa|up_5|NZ_CP026961.1_392539_392791_+,NA|57aa|up_0|NZ_CP026961.1_395932_396103_+,NA	NA|55aa|up_9|NZ_CP026961.1_386688_386853_+	NA	NA|106aa|up_8|NZ_CP026961.1_387097_387415_+	NA	NA|1056aa|up_7|NZ_CP026961.1_387601_390769_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP026961.1_390885_392151_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP026961.1_392539_392791_+	NA	NA|255aa|up_4|NZ_CP026961.1_392782_393547_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP026961.1_393708_394149_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP026961.1_394141_395353_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP026961.1_395456_395807_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP026961.1_395932_396103_+	NA	NA|341aa|down_0|NZ_CP026961.1_396497_397520_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP026961.1_397539_398139_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP026961.1_398145_398379_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP026961.1_398384_398831_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP026961.1_398844_399330_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP026961.1_399326_400586_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP026961.1_400648_401143_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP026961.1_401144_401651_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP026961.1_401681_402686_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP026961.1_402855_403461_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	4	1261349-1261449	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|70aa|up_8|NZ_CP026961.1_1252921_1253131_-,NA|128aa|up_6|NZ_CP026961.1_1253955_1254339_-,NA|34aa|up_0|NZ_CP026961.1_1260573_1260675_+,NA|221aa|down_1|NZ_CP026961.1_1262539_1263202_-,NA|179aa|down_7|NZ_CP026961.1_1269293_1269830_-	NA|84aa|up_9|NZ_CP026961.1_1252631_1252883_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP026961.1_1252921_1253131_-	NA	NA|194aa|up_7|NZ_CP026961.1_1253308_1253890_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP026961.1_1253955_1254339_-	NA	NA|209aa|up_5|NZ_CP026961.1_1254593_1255220_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP026961.1_1255664_1257188_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP026961.1_1257203_1257773_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP026961.1_1258264_1259020_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP026961.1_1259100_1260489_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP026961.1_1260573_1260675_+	NA	NA|319aa|down_0|NZ_CP026961.1_1261465_1262422_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP026961.1_1262539_1263202_-	NA	NA|136aa|down_2|NZ_CP026961.1_1263344_1263752_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP026961.1_1264264_1264843_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP026961.1_1264842_1266111_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP026961.1_1266148_1267615_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP026961.1_1267639_1269181_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP026961.1_1269293_1269830_-	NA	NA|235aa|down_8|NZ_CP026961.1_1270222_1270927_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP026961.1_1271325_1271598_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	5	1496636-1496728	4	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|36aa|up_3|NZ_CP026961.1_1493119_1493227_+,NA|169aa|down_4|NZ_CP026961.1_1500475_1500982_+,NA|239aa|down_5|NZ_CP026961.1_1501143_1501860_+	NA|313aa|up_9|NZ_CP026961.1_1487321_1488260_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP026961.1_1488470_1489007_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP026961.1_1489175_1489652_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP026961.1_1489691_1490987_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP026961.1_1491014_1491536_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP026961.1_1492034_1493045_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP026961.1_1493119_1493227_+	NA	NA|139aa|up_2|NZ_CP026961.1_1493319_1493736_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP026961.1_1493732_1495394_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP026961.1_1495782_1496418_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP026961.1_1496796_1497684_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP026961.1_1497831_1498782_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP026961.1_1498836_1499556_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP026961.1_1499539_1500340_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP026961.1_1500475_1500982_+	NA	NA|239aa|down_5|NZ_CP026961.1_1501143_1501860_+	NA	NA|263aa|down_6|NZ_CP026961.1_1502028_1502817_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP026961.1_1503067_1503442_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP026961.1_1504389_1505319_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP026961.1_1505513_1505738_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	6	1559896-1559994	5	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|39aa|up_2|NZ_CP026961.1_1557923_1558040_+,NA|230aa|down_2|NZ_CP026961.1_1561815_1562505_-,NA|100aa|down_5|NZ_CP026961.1_1563674_1563974_+	NA|336aa|up_9|NZ_CP026961.1_1549703_1550711_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP026961.1_1551298_1552096_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP026961.1_1552456_1553101_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP026961.1_1553797_1555948_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP026961.1_1556093_1556453_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP026961.1_1556642_1557359_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP026961.1_1557358_1557832_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP026961.1_1557923_1558040_+	NA	NA|215aa|up_1|NZ_CP026961.1_1558184_1558829_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP026961.1_1558944_1559811_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP026961.1_1560011_1561232_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP026961.1_1561228_1561717_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP026961.1_1561815_1562505_-	NA	NA|148aa|down_3|NZ_CP026961.1_1562631_1563075_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_CP026961.1_1563141_1563537_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_CP026961.1_1563674_1563974_+	NA	NA|181aa|down_6|NZ_CP026961.1_1564053_1564596_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP026961.1_1564691_1565258_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP026961.1_1565259_1565718_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP026961.1_1565720_1566404_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	7	1702125-1702206	6	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	1702149-1702182|1702149-1702182	NZ_CP026961.1_2524414-2524381|NZ_CP026961.1_2612823-2612856	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA	NA|194aa|up_9|NZ_CP026961.1_1695228_1695810_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP026961.1_1695882_1696500_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP026961.1_1696654_1697149_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP026961.1_1697547_1697970_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP026961.1_1698117_1698834_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP026961.1_1698916_1699456_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP026961.1_1699605_1699926_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP026961.1_1700069_1700426_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP026961.1_1700583_1700964_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP026961.1_1701142_1702021_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP026961.1_1702762_1703149_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP026961.1_1703141_1703438_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP026961.1_1703687_1704713_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP026961.1_1704705_1705401_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP026961.1_1705418_1706240_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP026961.1_1706593_1706788_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP026961.1_1707020_1707872_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP026961.1_1708199_1708961_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP026961.1_1709058_1710366_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP026961.1_1710471_1711722_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	8	1750980-1751262	2	CRT	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	9	1751010-1751035|1751010-1751035|1751010-1751035|1751010-1751035|1751010-1751035|1751010-1751035|1751124-1751149|1751124-1751149|1751124-1751149	NZ_CP026961.1_1658874-1658849|NZ_CP026961.1_1750954-1750979|NZ_CP026961.1_838878-838853|NZ_CP026961.1_838934-838909|NZ_CP026961.1_1622269-1622294|NZ_CP026961.1_2821022-2820997|NZ_CP026961.1_1658930-1658905|NZ_CP026961.1_1658986-1658961|NZ_CP026961.1_1222736-1222761	NA	4	4	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA	NA|499aa|up_9|NZ_CP026961.1_1739868_1741365_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP026961.1_1741357_1741699_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP026961.1_1741698_1742127_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP026961.1_1742119_1744525_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP026961.1_1744655_1745039_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP026961.1_1745102_1745696_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP026961.1_1746111_1746489_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP026961.1_1746850_1747978_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP026961.1_1748285_1749476_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP026961.1_1749584_1750829_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP026961.1_1751331_1752261_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP026961.1_1752502_1753882_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP026961.1_1753871_1755077_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP026961.1_1755427_1756759_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP026961.1_1757083_1757659_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP026961.1_1757663_1758188_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP026961.1_1758203_1758779_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP026961.1_1758938_1762415_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP026961.1_1762415_1766069_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP026961.1_1766234_1767137_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	9	1884664-1884751	7	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA|45aa|down_0|NZ_CP026961.1_1884760_1884895_-,NA|432aa|down_1|NZ_CP026961.1_1885046_1886342_+	NA|224aa|up_9|NZ_CP026961.1_1872454_1873126_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP026961.1_1873118_1875308_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP026961.1_1875286_1876771_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP026961.1_1876763_1877792_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP026961.1_1877794_1878361_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP026961.1_1878375_1879854_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP026961.1_1879875_1881123_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP026961.1_1881387_1882194_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP026961.1_1882186_1883587_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP026961.1_1883601_1884177_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP026961.1_1884760_1884895_-	NA	NA|432aa|down_1|NZ_CP026961.1_1885046_1886342_+	NA	NA|391aa|down_2|NZ_CP026961.1_1886766_1887939_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP026961.1_1887992_1888535_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP026961.1_1888688_1888955_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP026961.1_1888957_1890676_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP026961.1_1890912_1891146_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP026961.1_1891343_1892705_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP026961.1_1892701_1893721_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP026961.1_1893853_1894516_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	10	2122924-2123133	3	CRT	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	TGTGTTGGGGCCCTTACCCCAACTTGCACATTATTGANNN	40	3	25	2122961-2122982|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123020-2123037|2123075-2123096	NZ_CP026961.1_2123134-2123155|NZ_CP026961.1_38868-38885|NZ_CP026961.1_588022-588005|NZ_CP026961.1_996788-996771|NZ_CP026961.1_1222882-1222865|NZ_CP026961.1_1659068-1659085|NZ_CP026961.1_1659126-1659143|NZ_CP026961.1_1659184-1659201|NZ_CP026961.1_1702207-1702224|NZ_CP026961.1_1770665-1770682|NZ_CP026961.1_1894651-1894668|NZ_CP026961.1_2123193-2123210|NZ_CP026961.1_2301902-2301885|NZ_CP026961.1_2524297-2524280|NZ_CP026961.1_2612940-2612957|NZ_CP026961.1_48217-48234|NZ_CP026961.1_1140040-1140023|NZ_CP026961.1_1666274-1666291|NZ_CP026961.1_2267936-2267919|NZ_CP026961.1_2563625-2563608|NZ_CP026961.1_2608531-2608514|NZ_CP026961.1_2821045-2821062|NZ_CP026961.1_1626884-1626867|NZ_CP026961.1_2020681-2020664|NZ_CP026961.1_2123134-2123155	NA	3	3	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA	NA|188aa|up_9|NZ_CP026961.1_2105288_2105852_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|up_8|NZ_CP026961.1_2105848_2106802_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|394aa|up_7|NZ_CP026961.1_2106911_2108093_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|806aa|up_6|NZ_CP026961.1_2108380_2110798_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|up_5|NZ_CP026961.1_2110819_2111131_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|2187aa|up_4|NZ_CP026961.1_2111473_2118034_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|423aa|up_3|NZ_CP026961.1_2118150_2119419_-	pfam03486, HI0933_like, HI0933-like protein	NA|554aa|up_2|NZ_CP026961.1_2119825_2121487_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|232aa|up_1|NZ_CP026961.1_2121483_2122179_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|141aa|up_0|NZ_CP026961.1_2122195_2122618_+	pfam12732, YtxH, YtxH-like protein	NA|470aa|down_0|NZ_CP026961.1_2123481_2124891_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|283aa|down_1|NZ_CP026961.1_2124894_2125743_+	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|264aa|down_2|NZ_CP026961.1_2126292_2127084_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|215aa|down_3|NZ_CP026961.1_2127098_2127743_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|281aa|down_4|NZ_CP026961.1_2128212_2129055_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|104aa|down_5|NZ_CP026961.1_2129179_2129491_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|down_6|NZ_CP026961.1_2129577_2130654_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|down_7|NZ_CP026961.1_2130718_2131030_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|286aa|down_8|NZ_CP026961.1_2131129_2131987_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|199aa|down_9|NZ_CP026961.1_2132015_2132612_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed
GCF_001018725.2_ASM101872v2	NZ_CP026961	Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome	11	2824917-2825173	8,4	CRISPRCasFinder,CRT	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	TCTATGTTGGGGCCCCGCCAACTTGCA,CCCCGCCAACTTGCANNNT	27,19	3	10	2824944-2824972|2824944-2824972|2824944-2824972|2824944-2824972|2824944-2824972|2824944-2824972|2824944-2824972|2824944-2824972|2825000-2825029|2825118-2825154	NZ_CP026961.1_673578-673606|NZ_CP026961.1_838889-838917|NZ_CP026961.1_1658829-1658857|NZ_CP026961.1_1658885-1658913|NZ_CP026961.1_1658941-1658969|NZ_CP026961.1_1868383-1868411|NZ_CP026961.1_2612869-2612897|NZ_CP026961.1_2820977-2821005|NZ_CP026961.1_2825169-2825198|NZ_CP026961.1_152510-152546	NA:NA	2,4	4	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|75aa|up_4|NZ_CP026961.1_2821234_2821459_-,NA|49aa|up_3|NZ_CP026961.1_2821415_2821562_-,NA|78aa|up_1|NZ_CP026961.1_2823670_2823904_+,NA|62aa|up_0|NZ_CP026961.1_2824525_2824711_+,NA|169aa|down_2|NZ_CP026961.1_2826792_2827299_-,NA|31aa|down_4|NZ_CP026961.1_2828331_2828424_+,NA|56aa|down_6|NZ_CP026961.1_2829263_2829431_-	NA|311aa|up_9|NZ_CP026961.1_2816027_2816960_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP026961.1_2816982_2817984_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP026961.1_2818421_2819147_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP026961.1_2819241_2819967_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP026961.1_2820074_2820791_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP026961.1_2821234_2821459_-	NA	NA|49aa|up_3|NZ_CP026961.1_2821415_2821562_-	NA	NA|320aa|up_2|NZ_CP026961.1_2822234_2823194_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP026961.1_2823670_2823904_+	NA	NA|62aa|up_0|NZ_CP026961.1_2824525_2824711_+	NA	NA|117aa|down_0|NZ_CP026961.1_2825532_2825883_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP026961.1_2826036_2826534_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP026961.1_2826792_2827299_-	NA	NA|134aa|down_3|NZ_CP026961.1_2827970_2828372_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_4|NZ_CP026961.1_2828331_2828424_+	NA	NA|110aa|down_5|NZ_CP026961.1_2828740_2829070_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP026961.1_2829263_2829431_-	NA	NA|168aa|down_7|NZ_CP026961.1_2829558_2830062_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP026961.1_2830054_2830642_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP026961.1_2830653_2831454_-	PRK00865, PRK00865, glutamate racemase; Provisional
