assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	1	521348-521448	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP026962.1_512920_513130_-,NA|128aa|up_6|NZ_CP026962.1_513954_514338_-,NA|34aa|up_0|NZ_CP026962.1_520572_520674_+,NA|221aa|down_1|NZ_CP026962.1_522538_523201_-,NA|179aa|down_7|NZ_CP026962.1_529292_529829_-	NA|84aa|up_9|NZ_CP026962.1_512630_512882_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP026962.1_512920_513130_-	NA	NA|194aa|up_7|NZ_CP026962.1_513307_513889_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP026962.1_513954_514338_-	NA	NA|209aa|up_5|NZ_CP026962.1_514592_515219_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP026962.1_515663_517187_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP026962.1_517202_517772_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP026962.1_518263_519019_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP026962.1_519099_520488_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP026962.1_520572_520674_+	NA	NA|319aa|down_0|NZ_CP026962.1_521464_522421_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP026962.1_522538_523201_-	NA	NA|136aa|down_2|NZ_CP026962.1_523343_523751_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP026962.1_524263_524842_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP026962.1_524841_526110_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP026962.1_526147_527614_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP026962.1_527638_529180_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP026962.1_529292_529829_-	NA	NA|235aa|down_8|NZ_CP026962.1_530221_530926_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP026962.1_531324_531597_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	2	756636-756728	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP026962.1_753119_753227_+,NA|169aa|down_4|NZ_CP026962.1_760475_760982_+,NA|239aa|down_5|NZ_CP026962.1_761143_761860_+	NA|313aa|up_9|NZ_CP026962.1_747321_748260_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP026962.1_748470_749007_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP026962.1_749175_749652_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP026962.1_749691_750987_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP026962.1_751014_751536_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP026962.1_752034_753045_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP026962.1_753119_753227_+	NA	NA|139aa|up_2|NZ_CP026962.1_753319_753736_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP026962.1_753732_755394_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP026962.1_755782_756418_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP026962.1_756796_757684_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP026962.1_757831_758782_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP026962.1_758836_759556_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP026962.1_759539_760340_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP026962.1_760475_760982_+	NA	NA|239aa|down_5|NZ_CP026962.1_761143_761860_+	NA	NA|263aa|down_6|NZ_CP026962.1_762028_762817_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP026962.1_763067_763442_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP026962.1_764389_765319_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP026962.1_765513_765738_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	3	819896-819994	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP026962.1_817923_818040_+,NA|230aa|down_2|NZ_CP026962.1_821815_822505_-,NA|100aa|down_5|NZ_CP026962.1_823674_823974_+	NA|336aa|up_9|NZ_CP026962.1_809703_810711_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP026962.1_811298_812096_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP026962.1_812456_813101_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP026962.1_813797_815948_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP026962.1_816093_816453_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP026962.1_816642_817359_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP026962.1_817358_817832_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP026962.1_817923_818040_+	NA	NA|215aa|up_1|NZ_CP026962.1_818184_818829_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP026962.1_818944_819811_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP026962.1_820011_821232_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP026962.1_821228_821717_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP026962.1_821815_822505_-	NA	NA|148aa|down_3|NZ_CP026962.1_822631_823075_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_CP026962.1_823141_823537_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_CP026962.1_823674_823974_+	NA	NA|181aa|down_6|NZ_CP026962.1_824053_824596_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP026962.1_824691_825258_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP026962.1_825259_825718_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP026962.1_825720_826404_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	4	962125-962206	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	962149-962182|962149-962182	NZ_CP026962.1_1437350-1437317|NZ_CP026962.1_1525759-1525792	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP026962.1_955228_955810_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP026962.1_955882_956500_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP026962.1_956654_957149_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP026962.1_957547_957970_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP026962.1_958117_958834_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP026962.1_958916_959456_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP026962.1_959605_959926_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP026962.1_960069_960426_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP026962.1_960583_960964_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP026962.1_961142_962021_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP026962.1_962762_963149_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP026962.1_963141_963438_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP026962.1_963687_964713_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP026962.1_964705_965401_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP026962.1_965418_966240_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP026962.1_966593_966788_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP026962.1_967020_967872_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP026962.1_968199_968961_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP026962.1_969058_970366_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP026962.1_970471_971722_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	5	1010980-1011262	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	9	1011010-1011035|1011010-1011035|1011010-1011035|1011010-1011035|1011010-1011035|1011010-1011035|1011124-1011149|1011124-1011149|1011124-1011149	NZ_CP026962.1_918874-918849|NZ_CP026962.1_1010954-1010979|NZ_CP026962.1_98878-98853|NZ_CP026962.1_98934-98909|NZ_CP026962.1_882269-882294|NZ_CP026962.1_1229151-1229176|NZ_CP026962.1_918930-918905|NZ_CP026962.1_918986-918961|NZ_CP026962.1_482735-482760	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP026962.1_999868_1001365_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP026962.1_1001357_1001699_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP026962.1_1001698_1002127_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP026962.1_1002119_1004525_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP026962.1_1004655_1005039_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP026962.1_1005102_1005696_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP026962.1_1006111_1006489_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP026962.1_1006850_1007978_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP026962.1_1008285_1009476_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP026962.1_1009584_1010829_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP026962.1_1011331_1012261_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP026962.1_1012502_1013882_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP026962.1_1013871_1015077_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP026962.1_1015427_1016759_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP026962.1_1017083_1017659_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP026962.1_1017663_1018188_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP026962.1_1018203_1018779_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP026962.1_1018938_1022415_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP026962.1_1022415_1026069_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP026962.1_1026234_1027137_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	6	1144664-1144751	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP026962.1_1144760_1144895_-,NA|432aa|down_1|NZ_CP026962.1_1145046_1146342_+	NA|224aa|up_9|NZ_CP026962.1_1132454_1133126_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP026962.1_1133118_1135308_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP026962.1_1135286_1136771_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP026962.1_1136763_1137792_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP026962.1_1137794_1138361_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP026962.1_1138375_1139854_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP026962.1_1139875_1141123_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP026962.1_1141387_1142194_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP026962.1_1142186_1143587_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP026962.1_1143601_1144177_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP026962.1_1144760_1144895_-	NA	NA|432aa|down_1|NZ_CP026962.1_1145046_1146342_+	NA	NA|391aa|down_2|NZ_CP026962.1_1146766_1147939_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP026962.1_1147992_1148535_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP026962.1_1148688_1148955_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP026962.1_1148957_1150676_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP026962.1_1150912_1151146_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP026962.1_1151343_1152705_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP026962.1_1152701_1153721_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP026962.1_1153853_1154516_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	7	1881014-1881224	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1881052-1881072|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881111-1881130|1881169-1881186	NZ_CP026962.1_1880993-1881013|NZ_CP026962.1_98972-98953|NZ_CP026962.1_256772-256791|NZ_CP026962.1_399970-399989|NZ_CP026962.1_482866-482885|NZ_CP026962.1_913423-913404|NZ_CP026962.1_913478-913459|NZ_CP026962.1_919083-919064|NZ_CP026962.1_919141-919122|NZ_CP026962.1_919199-919180|NZ_CP026962.1_962222-962203|NZ_CP026962.1_1030680-1030661|NZ_CP026962.1_1154666-1154647|NZ_CP026962.1_1437218-1437237|NZ_CP026962.1_1525891-1525872|NZ_CP026962.1_1702254-1702235|NZ_CP026962.1_1880938-1880957|NZ_CP026962.1_2039246-2039227|NZ_CP026962.1_2545649-2545668|NZ_CP026962.1_400024-400043|NZ_CP026962.1_926289-926270|NZ_CP026962.1_1229113-1229132|NZ_CP026962.1_1486563-1486544|NZ_CP026962.1_1736220-1736201|NZ_CP026962.1_2048595-2048576|NZ_CP026962.1_886869-886888|NZ_CP026962.1_1880996-1881013	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP026962.1_1871533_1872130_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP026962.1_1872158_1873016_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP026962.1_1873115_1873427_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP026962.1_1873491_1874568_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP026962.1_1874654_1874966_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP026962.1_1875090_1875933_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP026962.1_1876402_1877047_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP026962.1_1877061_1877853_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP026962.1_1878402_1879251_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP026962.1_1879254_1880664_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP026962.1_1881527_1881950_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP026962.1_1881966_1882662_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP026962.1_1882658_1884320_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP026962.1_1884726_1885995_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP026962.1_1886111_1892672_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP026962.1_1893014_1893326_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP026962.1_1893347_1895765_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP026962.1_1896052_1897234_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP026962.1_1897343_1898297_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP026962.1_1898293_1898857_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	8	2037797-2037875	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2037820-2037852|2037820-2037852|2037820-2037852|2037820-2037852|2037820-2037852|2037820-2037852	NZ_CP026962.1_918885-918917|NZ_CP026962.1_918941-918973|NZ_CP026962.1_1437304-1437272|NZ_CP026962.1_1702284-1702316|NZ_CP026962.1_2631220-2631252|NZ_CP026962.1_1525805-1525837	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP026962.1_2031991_2032267_+,NA|129aa|up_1|NZ_CP026962.1_2036252_2036639_-,NA|138aa|down_1|NZ_CP026962.1_2039558_2039972_-,NA|37aa|down_2|NZ_CP026962.1_2040000_2040111_-,NA|31aa|down_6|NZ_CP026962.1_2043116_2043209_-	NA|419aa|up_9|NZ_CP026962.1_2029914_2031171_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP026962.1_2031173_2031374_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP026962.1_2031520_2031985_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP026962.1_2031991_2032267_+	NA	NA|406aa|up_5|NZ_CP026962.1_2032544_2033762_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP026962.1_2033877_2034507_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP026962.1_2034496_2035540_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP026962.1_2035536_2036238_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP026962.1_2036252_2036639_-	NA	NA|253aa|up_0|NZ_CP026962.1_2036855_2037614_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP026962.1_2038141_2039128_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP026962.1_2039558_2039972_-	NA	NA|37aa|down_2|NZ_CP026962.1_2040000_2040111_-	NA	NA|244aa|down_3|NZ_CP026962.1_2040196_2040928_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP026962.1_2040929_2042243_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP026962.1_2042534_2043035_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP026962.1_2043116_2043209_-	NA	DEDDh|185aa|down_7|NZ_CP026962.1_2043423_2043978_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP026962.1_2044045_2045116_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP026962.1_2045362_2045893_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	9	2229878-2229967	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_4|NZ_CP026962.1_2224749_2224980_-,NA|364aa|up_0|NZ_CP026962.1_2228769_2229861_+,NA|35aa|down_0|NZ_CP026962.1_2230303_2230408_-,NA|31aa|down_2|NZ_CP026962.1_2232519_2232612_+	NA|221aa|up_9|NZ_CP026962.1_2219382_2220045_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|237aa|up_8|NZ_CP026962.1_2220359_2221070_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_7|NZ_CP026962.1_2221190_2221634_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_6|NZ_CP026962.1_2221833_2222247_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_5|NZ_CP026962.1_2222704_2224078_-	pfam01878, EVE, EVE domain	NA|77aa|up_4|NZ_CP026962.1_2224749_2224980_-	NA	NA|222aa|up_3|NZ_CP026962.1_2226384_2227050_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP026962.1_2227201_2227522_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP026962.1_2227523_2228504_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP026962.1_2228769_2229861_+	NA	NA|35aa|down_0|NZ_CP026962.1_2230303_2230408_-	NA	NA|379aa|down_1|NZ_CP026962.1_2231094_2232231_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP026962.1_2232519_2232612_+	NA	NA|286aa|down_3|NZ_CP026962.1_2233316_2234174_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP026962.1_2234241_2235024_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP026962.1_2235255_2237061_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP026962.1_2237741_2239280_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP026962.1_2239314_2241447_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP026962.1_2241458_2241893_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP026962.1_2241892_2242999_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001018655.2_ASM101865v2	NZ_CP026962	Staphylococcus aureus strain FDAARGOS_6 chromosome, complete genome	10	2353805-2353998	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	14	2353828-2353860|2353828-2353860|2353828-2353860|2353828-2353860|2353828-2353860|2353884-2353919|2353884-2353919|2353884-2353919|2353884-2353919|2353943-2353975|2353943-2353975|2353943-2353975|2353943-2353975|2353943-2353975	NZ_CP026962.1_918885-918917|NZ_CP026962.1_918941-918973|NZ_CP026962.1_1437304-1437272|NZ_CP026962.1_1525805-1525837|NZ_CP026962.1_2631220-2631252|NZ_CP026962.1_1229144-1229109|NZ_CP026962.1_1880969-1880934|NZ_CP026962.1_1702223-1702258|NZ_CP026962.1_2048564-2048599|NZ_CP026962.1_918829-918861|NZ_CP026962.1_918885-918917|NZ_CP026962.1_918941-918973|NZ_CP026962.1_1437304-1437272|NZ_CP026962.1_2631220-2631252	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP026962.1_2344330_2344495_+,NA|106aa|up_8|NZ_CP026962.1_2344739_2345057_+,NA|84aa|up_5|NZ_CP026962.1_2350181_2350433_+,NA|57aa|up_0|NZ_CP026962.1_2353574_2353745_+,NA	NA|55aa|up_9|NZ_CP026962.1_2344330_2344495_+	NA	NA|106aa|up_8|NZ_CP026962.1_2344739_2345057_+	NA	NA|1056aa|up_7|NZ_CP026962.1_2345243_2348411_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP026962.1_2348527_2349793_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP026962.1_2350181_2350433_+	NA	NA|255aa|up_4|NZ_CP026962.1_2350424_2351189_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP026962.1_2351350_2351791_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP026962.1_2351783_2352995_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP026962.1_2353098_2353449_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP026962.1_2353574_2353745_+	NA	NA|341aa|down_0|NZ_CP026962.1_2354139_2355162_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP026962.1_2355181_2355781_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP026962.1_2355787_2356021_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP026962.1_2356026_2356473_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP026962.1_2356486_2356972_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP026962.1_2356968_2358228_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP026962.1_2358290_2358785_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP026962.1_2358786_2359293_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP026962.1_2359323_2360328_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP026962.1_2360497_2361103_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
