assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	1	107694-107785	1	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	CTTTAGCGATTAGAGGCTTTTATGCAGTTG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|239aa|up_5|NZ_CP026964.1_102596_103313_-,NA|169aa|up_4|NZ_CP026964.1_103474_103981_-,NA|36aa|down_3|NZ_CP026964.1_111104_111212_-	NA|75aa|up_9|NZ_CP026964.1_98719_98944_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP026964.1_99138_100068_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP026964.1_101015_101390_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP026964.1_101639_102428_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP026964.1_102596_103313_-	NA	NA|169aa|up_4|NZ_CP026964.1_103474_103981_-	NA	NA|267aa|up_3|NZ_CP026964.1_104116_104917_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP026964.1_104900_105620_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP026964.1_105674_106625_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_CP026964.1_106773_107661_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP026964.1_107911_108547_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP026964.1_108937_110599_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_CP026964.1_110595_111012_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP026964.1_111104_111212_-	NA	NA|337aa|down_4|NZ_CP026964.1_111288_112299_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP026964.1_112797_113319_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP026964.1_113346_114642_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP026964.1_114681_115158_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP026964.1_115326_115863_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP026964.1_116073_117012_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2	806401-806574	1,2	PILER-CR,CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	TGCAAGTTGG---CGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	43,24	1	25	806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539|806524-806539	NZ_CP026964.1_474022-474007|NZ_CP026964.1_474078-474063|NZ_CP026964.1_489290-489305|NZ_CP026964.1_489562-489577|NZ_CP026964.1_971758-971773|NZ_CP026964.1_1211772-1211757|NZ_CP026964.1_1581564-1581579|NZ_CP026964.1_1918919-1918934|NZ_CP026964.1_2093631-2093646|NZ_CP026964.1_2179082-2179097|NZ_CP026964.1_2183494-2183479|NZ_CP026964.1_2391697-2391682|NZ_CP026964.1_2492333-2492348|NZ_CP026964.1_2702890-2702905|NZ_CP026964.1_2737983-2737998|NZ_CP026964.1_2738039-2738054|NZ_CP026964.1_474134-474119|NZ_CP026964.1_1592375-1592390|NZ_CP026964.1_1741729-1741714|NZ_CP026964.1_1798737-1798722|NZ_CP026964.1_1904387-1904372|NZ_CP026964.1_2136897-2136912|NZ_CP026964.1_2359008-2359023|NZ_CP026964.1_2745244-2745259|NZ_CP026964.1_2782156-2782141	NA:NA	2,1	2	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|60aa|up_1|NZ_CP026964.1_803360_803540_+,NA	NA|205aa|up_9|NZ_CP026964.1_797078_797693_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP026964.1_797685_798936_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP026964.1_798951_799965_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP026964.1_799933_800512_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP026964.1_800508_801087_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP026964.1_801079_801784_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP026964.1_801780_802539_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP026964.1_802535_803168_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP026964.1_803360_803540_+	NA	NA|681aa|up_0|NZ_CP026964.1_804260_806303_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP026964.1_806748_807801_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP026964.1_807787_808660_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP026964.1_808656_808962_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP026964.1_808925_810164_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP026964.1_810327_810888_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP026964.1_811736_812399_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP026964.1_812415_813108_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP026964.1_813104_813872_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP026964.1_814106_814607_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP026964.1_814609_815086_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	3	938832-938939	3	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	CCAACTGTAAACCGTAGTGTACTTATTATTTATAATAAT	39	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|163aa|up_7|NZ_CP026964.1_930333_930822_+,NA|64aa|down_1|NZ_CP026964.1_941755_941947_-,NA|56aa|down_4|NZ_CP026964.1_944630_944798_+	NA|604aa|up_9|NZ_CP026964.1_927219_929031_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|256aa|up_8|NZ_CP026964.1_929391_930159_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|163aa|up_7|NZ_CP026964.1_930333_930822_+	NA	NA|498aa|up_6|NZ_CP026964.1_930814_932308_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|376aa|up_5|NZ_CP026964.1_932313_933441_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|288aa|up_4|NZ_CP026964.1_933477_934341_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|503aa|up_3|NZ_CP026964.1_934352_935861_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|385aa|up_2|NZ_CP026964.1_936287_937442_+	PRK08068, PRK08068, transaminase; Reviewed	NA|333aa|up_1|NZ_CP026964.1_937464_938463_+	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|69aa|up_0|NZ_CP026964.1_938552_938759_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|803aa|down_0|NZ_CP026964.1_939107_941516_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|64aa|down_1|NZ_CP026964.1_941755_941947_-	NA	NA|200aa|down_2|NZ_CP026964.1_942185_942785_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|515aa|down_3|NZ_CP026964.1_942974_944519_+	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|56aa|down_4|NZ_CP026964.1_944630_944798_+	NA	NA|183aa|down_5|NZ_CP026964.1_944873_945422_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|830aa|down_6|NZ_CP026964.1_945566_948056_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|76aa|down_7|NZ_CP026964.1_948271_948499_+	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|665aa|down_8|NZ_CP026964.1_948510_950505_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|57aa|down_9|NZ_CP026964.1_950517_950688_+	pfam12669, P12, Virus attachment protein p12 family
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	4	1079074-1079152	4	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	TTTCTACAGACAATGCAAGTTGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|36aa|up_0|NZ_CP026964.1_1078659_1078767_+,NA|56aa|down_2|NZ_CP026964.1_1083202_1083370_+	NA|693aa|up_9|NZ_CP026964.1_1068482_1070561_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP026964.1_1070698_1072108_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP026964.1_1072393_1073200_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP026964.1_1073262_1073919_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP026964.1_1074031_1074505_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP026964.1_1074627_1075839_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP026964.1_1076020_1076680_-	PHA02562, 46, endonuclease subunit; Provisional	NA|381aa|up_2|NZ_CP026964.1_1076739_1077882_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP026964.1_1078139_1078526_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP026964.1_1078659_1078767_+	NA	NA|588aa|down_0|NZ_CP026964.1_1079450_1081214_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP026964.1_1081238_1082972_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_CP026964.1_1083202_1083370_+	NA	NA|229aa|down_3|NZ_CP026964.1_1083424_1084111_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_CP026964.1_1084088_1085447_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_CP026964.1_1085448_1086456_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_CP026964.1_1086433_1087549_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_CP026964.1_1087559_1088252_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_CP026964.1_1088262_1088730_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_CP026964.1_1088781_1089759_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	5	1246017-1246102	5	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	1	1246047-1246072	NZ_CP026964.1_2391727-2391702	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA,NA|57aa|down_0|NZ_CP026964.1_1246120_1246291_-,NA|84aa|down_5|NZ_CP026964.1_1249430_1249682_-,NA|106aa|down_8|NZ_CP026964.1_1254803_1255121_-,NA|55aa|down_9|NZ_CP026964.1_1255365_1255530_-	NA|202aa|up_9|NZ_CP026964.1_1238875_1239481_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP026964.1_1239650_1240655_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP026964.1_1240685_1241192_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP026964.1_1241193_1241688_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP026964.1_1241750_1243010_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP026964.1_1243006_1243492_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP026964.1_1243505_1243952_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP026964.1_1243957_1244191_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP026964.1_1244197_1244797_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP026964.1_1244816_1245839_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP026964.1_1246120_1246291_-	NA	NA|117aa|down_1|NZ_CP026964.1_1246416_1246767_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP026964.1_1246868_1248080_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP026964.1_1248072_1248513_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP026964.1_1248674_1249439_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP026964.1_1249430_1249682_-	NA	NA|422aa|down_6|NZ_CP026964.1_1250070_1251336_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP026964.1_1251452_1254620_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP026964.1_1254803_1255121_-	NA	NA|55aa|down_9|NZ_CP026964.1_1255365_1255530_-	NA
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	6	1357528-1357609	6	CRISPRCasFinder	no	csa3	cas3,WYL,csa3,DEDDh,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|53aa|up_1|NZ_CP026964.1_1356250_1356409_-,NA|35aa|up_0|NZ_CP026964.1_1357088_1357193_+,NA|364aa|down_0|NZ_CP026964.1_1357625_1358717_-,NA|77aa|down_5|NZ_CP026964.1_1362506_1362737_+	NA|452aa|up_9|NZ_CP026964.1_1336443_1337799_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|up_8|NZ_CP026964.1_1345909_1347016_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP026964.1_1347015_1347450_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP026964.1_1347461_1349594_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP026964.1_1349628_1351167_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP026964.1_1351847_1353653_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP026964.1_1353884_1354667_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP026964.1_1354734_1355592_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP026964.1_1356250_1356409_-	NA	NA|35aa|up_0|NZ_CP026964.1_1357088_1357193_+	NA	NA|364aa|down_0|NZ_CP026964.1_1357625_1358717_-	NA	NA|327aa|down_1|NZ_CP026964.1_1358982_1359963_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP026964.1_1359964_1360285_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP026964.1_1360436_1361102_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP026964.1_1361537_1362476_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP026964.1_1362506_1362737_+	NA	NA|458aa|down_6|NZ_CP026964.1_1363408_1364782_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP026964.1_1365239_1365653_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP026964.1_1365852_1366296_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP026964.1_1366416_1367127_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	7	1798751-1798835	7	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	TCTATGTTGGGGCCCACCCCAACTTGCAT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|33aa|up_4|NZ_CP026964.1_1794326_1794425_+,NA	NA|165aa|up_9|NZ_CP026964.1_1789343_1789838_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP026964.1_1789960_1790908_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP026964.1_1790995_1792198_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP026964.1_1792443_1792944_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP026964.1_1793084_1794203_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|33aa|up_4|NZ_CP026964.1_1794326_1794425_+	NA	NA|352aa|up_3|NZ_CP026964.1_1794518_1795574_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP026964.1_1795748_1796438_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP026964.1_1796742_1797156_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP026964.1_1797360_1798659_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP026964.1_1799112_1800054_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP026964.1_1800074_1803272_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP026964.1_1803721_1804951_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP026964.1_1805145_1806003_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP026964.1_1806002_1806947_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP026964.1_1807215_1808184_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP026964.1_1808205_1809963_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP026964.1_1810310_1811672_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP026964.1_1812019_1813141_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP026964.1_1813189_1814458_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	8	1884559-1884711	8,2	CRISPRCasFinder,PILER-CR	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	AAGTTGGGGACGGGGCCCCAACACAGA,TGCAAGTTGGGGACGGGGCCCCAACACAGA--------GAAATTCG	27,46	0	0	NA	NA	NA:NA	2,2	2	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|43aa|up_8|NZ_CP026964.1_1877300_1877429_+,NA|49aa|up_3|NZ_CP026964.1_1880465_1880612_+,NA	NA|589aa|up_9|NZ_CP026964.1_1875201_1876968_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_8|NZ_CP026964.1_1877300_1877429_+	NA	NA|258aa|up_7|NZ_CP026964.1_1877428_1878202_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|NZ_CP026964.1_1878362_1879637_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|NZ_CP026964.1_1879721_1880144_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP026964.1_1880243_1880426_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP026964.1_1880465_1880612_+	NA	NA|338aa|up_2|NZ_CP026964.1_1880848_1881862_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP026964.1_1882173_1883316_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP026964.1_1883316_1884435_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP026964.1_1885015_1885684_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP026964.1_1885685_1888163_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP026964.1_1888505_1891136_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP026964.1_1891198_1891459_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP026964.1_1891462_1891891_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP026964.1_1891905_1892214_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP026964.1_1892498_1893137_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP026964.1_1893139_1894063_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP026964.1_1894074_1895343_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP026964.1_1895342_1895966_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	9	2307826-2307911	9	CRISPRCasFinder	no	cas3	cas3,WYL,csa3,DEDDh,DinG	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	7	2307856-2307881|2307856-2307881|2307856-2307881|2307856-2307881|2307856-2307881|2307856-2307881|2307856-2307881	NZ_CP026964.1_474083-474108|NZ_CP026964.1_474027-474052|NZ_CP026964.1_2702885-2702860|NZ_CP026964.1_2738034-2738009|NZ_CP026964.1_2782105-2782130|NZ_CP026964.1_2782161-2782186|NZ_CP026964.1_2782217-2782242	NA	1	1	Unclear	cas3,WYL,csa3,DEDDh,DinG	NA,NA	NA|436aa|up_9|NZ_CP026964.1_2293530_2294838_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|692aa|up_8|NZ_CP026964.1_2294993_2297069_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|291aa|up_7|NZ_CP026964.1_2297242_2298115_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|415aa|up_6|NZ_CP026964.1_2298287_2299532_-	pfam02388, FemAB, FemAB family	NA|373aa|up_5|NZ_CP026964.1_2299559_2300678_-	pfam01476, LysM, LysM domain	NA|303aa|up_4|NZ_CP026964.1_2300904_2301813_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_3|NZ_CP026964.1_2301834_2303001_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|256aa|up_2|NZ_CP026964.1_2303109_2303877_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|295aa|up_1|NZ_CP026964.1_2303860_2304745_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|869aa|up_0|NZ_CP026964.1_2305145_2307752_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_0|NZ_CP026964.1_2308220_2308571_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_1|NZ_CP026964.1_2308673_2309411_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|down_2|NZ_CP026964.1_2309410_2309914_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|down_3|NZ_CP026964.1_2310101_2310377_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|down_4|NZ_CP026964.1_2310811_2312179_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|down_5|NZ_CP026964.1_2312204_2312537_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|down_6|NZ_CP026964.1_2312523_2313774_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|down_7|NZ_CP026964.1_2313773_2317340_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|down_8|NZ_CP026964.1_2317486_2318218_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|down_9|NZ_CP026964.1_2318333_2318567_-	PRK00982, acpP, acyl carrier protein; Provisional
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	10	2318658-2318750	10	CRISPRCasFinder	no	cas3	cas3,WYL,csa3,DEDDh,DinG	Unclear	CTTATCAATTTATTGATTAGTGTTTCTTA	29	0	0	NA	NA	NA	1	1	Unclear	cas3,WYL,csa3,DEDDh,DinG	NA,NA	NA|117aa|up_9|NZ_CP026964.1_2308220_2308571_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP026964.1_2308673_2309411_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP026964.1_2309410_2309914_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP026964.1_2310101_2310377_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP026964.1_2310811_2312179_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP026964.1_2312204_2312537_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|NZ_CP026964.1_2312523_2313774_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|NZ_CP026964.1_2313773_2317340_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|NZ_CP026964.1_2317486_2318218_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP026964.1_2318333_2318567_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP026964.1_2318936_2319671_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP026964.1_2319663_2320590_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|NZ_CP026964.1_2320582_2321569_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|191aa|down_3|NZ_CP026964.1_2321573_2322146_-	PRK04424, PRK04424, transcription factor FapR	cas3|687aa|down_4|NZ_CP026964.1_2322348_2324409_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|549aa|down_5|NZ_CP026964.1_2324598_2326245_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_6|NZ_CP026964.1_2326259_2326634_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP026964.1_2327076_2327265_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_8|NZ_CP026964.1_2327645_2328287_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_9|NZ_CP026964.1_2328293_2328938_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	11	2395512-2395763	1	CRT	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	TNTNGGNNCCNCNCCAACTTGCATTGT	27	1	1	2395708-2395736	NZ_CP026964.1_1477638-1477610	NA	4	4	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|75aa|up_4|NZ_CP026964.1_2391884_2392109_-,NA|49aa|up_3|NZ_CP026964.1_2392065_2392212_-,NA|78aa|up_1|NZ_CP026964.1_2394320_2394554_+,NA|62aa|up_0|NZ_CP026964.1_2395172_2395358_+,NA|169aa|down_2|NZ_CP026964.1_2397382_2397889_-,NA|34aa|down_4|NZ_CP026964.1_2398908_2399010_+,NA|56aa|down_6|NZ_CP026964.1_2399838_2400006_-	NA|311aa|up_9|NZ_CP026964.1_2386677_2387610_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP026964.1_2387632_2388634_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP026964.1_2389071_2389797_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP026964.1_2389891_2390617_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP026964.1_2390724_2391441_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP026964.1_2391884_2392109_-	NA	NA|49aa|up_3|NZ_CP026964.1_2392065_2392212_-	NA	NA|320aa|up_2|NZ_CP026964.1_2392884_2393844_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP026964.1_2394320_2394554_+	NA	NA|62aa|up_0|NZ_CP026964.1_2395172_2395358_+	NA	NA|117aa|down_0|NZ_CP026964.1_2396122_2396473_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP026964.1_2396626_2397124_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP026964.1_2397382_2397889_-	NA	NA|133aa|down_3|NZ_CP026964.1_2398559_2398958_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|34aa|down_4|NZ_CP026964.1_2398908_2399010_+	NA	NA|106aa|down_5|NZ_CP026964.1_2399327_2399645_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP026964.1_2399838_2400006_-	NA	NA|168aa|down_7|NZ_CP026964.1_2400133_2400637_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP026964.1_2400629_2401217_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP026964.1_2401228_2402029_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	12	2476061-2476153	11	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	CCTTACAACTTTTAGTTGTTAGGGGATTTT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|432aa|up_1|NZ_CP026964.1_2474469_2475765_-,NA|45aa|up_0|NZ_CP026964.1_2475916_2476051_+,NA	NA|221aa|up_9|NZ_CP026964.1_2466295_2466958_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|340aa|up_8|NZ_CP026964.1_2467090_2468110_-	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|454aa|up_7|NZ_CP026964.1_2468106_2469468_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|78aa|up_6|NZ_CP026964.1_2469665_2469899_+	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|573aa|up_5|NZ_CP026964.1_2470135_2471854_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|89aa|up_4|NZ_CP026964.1_2471856_2472123_-	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|181aa|up_3|NZ_CP026964.1_2472276_2472819_-	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|391aa|up_2|NZ_CP026964.1_2472872_2474045_-	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|432aa|up_1|NZ_CP026964.1_2474469_2475765_-	NA	NA|45aa|up_0|NZ_CP026964.1_2475916_2476051_+	NA	NA|192aa|down_0|NZ_CP026964.1_2476634_2477210_+	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|467aa|down_1|NZ_CP026964.1_2477224_2478625_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|269aa|down_2|NZ_CP026964.1_2478617_2479424_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|416aa|down_3|NZ_CP026964.1_2479688_2480936_-	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|493aa|down_4|NZ_CP026964.1_2480957_2482436_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|189aa|down_5|NZ_CP026964.1_2482450_2483017_-	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|343aa|down_6|NZ_CP026964.1_2483019_2484048_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|495aa|down_7|NZ_CP026964.1_2484040_2485525_-	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|730aa|down_8|NZ_CP026964.1_2485503_2487693_-	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|224aa|down_9|NZ_CP026964.1_2487685_2488357_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	13	2654339-2654420	12	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA,NA	NA|301aa|up_9|NZ_CP026964.1_2638382_2639285_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP026964.1_2639450_2643104_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP026964.1_2643104_2646581_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP026964.1_2646740_2647316_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP026964.1_2647331_2647856_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP026964.1_2647860_2648436_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP026964.1_2648760_2650092_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP026964.1_2650442_2651648_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP026964.1_2651637_2653017_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP026964.1_2653258_2654188_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP026964.1_2654577_2655822_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP026964.1_2655930_2657121_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP026964.1_2657428_2658556_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP026964.1_2658917_2659295_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP026964.1_2659709_2660303_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP026964.1_2660366_2660750_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP026964.1_2660880_2663286_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP026964.1_2663278_2663707_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_CP026964.1_2663706_2664048_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP026964.1_2664040_2665537_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	14	2703162-2703243	13	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	2703186-2703219|2703186-2703219	NZ_CP026964.1_2093659-2093692|NZ_CP026964.1_2183466-2183433	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA,NA	NA|417aa|up_9|NZ_CP026964.1_2693646_2694897_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP026964.1_2695002_2696310_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP026964.1_2696407_2697169_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP026964.1_2697496_2698348_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP026964.1_2698580_2698775_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP026964.1_2699128_2699950_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP026964.1_2699967_2700663_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP026964.1_2700655_2701681_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP026964.1_2701930_2702227_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP026964.1_2702219_2702606_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP026964.1_2703346_2704225_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP026964.1_2704403_2704784_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP026964.1_2704941_2705298_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP026964.1_2705441_2705762_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP026964.1_2705911_2706451_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP026964.1_2706533_2707250_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP026964.1_2707397_2707820_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP026964.1_2708218_2708713_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP026964.1_2708867_2709485_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|194aa|down_9|NZ_CP026964.1_2709533_2710115_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_001018645.2_ASM101864v2	NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	15	2750587-2750667	14	CRISPRCasFinder	no	cas3	cas3,WYL,csa3,DEDDh,DinG	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	11	2750613-2750641|2750613-2750641|2750613-2750641|2750613-2750641|2750613-2750641|2750613-2750641|2750613-2750641|2750613-2750641|2750613-2750641|2750613-2750641|2750613-2750641	NZ_CP026964.1_396423-396395|NZ_CP026964.1_1741794-1741766|NZ_CP026964.1_2053651-2053623|NZ_CP026964.1_489338-489366|NZ_CP026964.1_597414-597386|NZ_CP026964.1_597472-597444|NZ_CP026964.1_1918967-1918995|NZ_CP026964.1_2391651-2391623|NZ_CP026964.1_2654433-2654405|NZ_CP026964.1_2703149-2703177|NZ_CP026964.1_2745179-2745207	NA	1	1	Unclear	cas3,WYL,csa3,DEDDh,DinG	NA,NA|36aa|down_5|NZ_CP026964.1_2758108_2758216_-,NA|35aa|down_7|NZ_CP026964.1_2759648_2759753_-	NA|301aa|up_9|NZ_CP026964.1_2739602_2740505_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP026964.1_2740747_2741335_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP026964.1_2741907_2742852_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP026964.1_2742962_2743958_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP026964.1_2743954_2744866_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP026964.1_2745630_2746566_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP026964.1_2746632_2748072_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP026964.1_2748079_2748565_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP026964.1_2748572_2749412_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP026964.1_2749417_2750350_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP026964.1_2750956_2753803_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP026964.1_2753810_2755796_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP026964.1_2756064_2756301_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP026964.1_2756297_2756948_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP026964.1_2757121_2757961_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP026964.1_2758108_2758216_-	NA	NA|370aa|down_6|NZ_CP026964.1_2758369_2759480_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP026964.1_2759648_2759753_-	NA	NA|844aa|down_8|NZ_CP026964.1_2759794_2762326_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP026964.1_2762739_2763312_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
