The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	5814	13635	2800003		Pandoravirus(16.67%)	10	NA	NA
WP_001217806.1|5814_6966_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604515.1|6949_7543_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_000446724.1|7893_8562_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|8563_8983_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|8986_9700_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|9798_10383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|10662_11103_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|11445_11919_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|11893_12580_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|12579_13635_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 2
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	1479823	1567007	2800003	holin,capsid,tail,terminase,head,portal,integrase,protease	Staphylococcus_phage(91.18%)	101	1483778:1483795	1530234:1530251
WP_000197635.1|1479823_1480567_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|1480741_1481026_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|1481101_1482718_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000128898.1|1483419_1483632_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_001293059.1|1483628_1484219_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	94.7	1.2e-96
1483778:1483795	attL	ATATATACAAGAACAAAA	NA	NA	NA	NA
WP_072419900.1|1484535_1484973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022887.1|1485078_1485522_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001045079.1|1486375_1487683_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000825510.1|1487843_1488755_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000812008.1|1488816_1489662_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206623.1|1490033_1491257_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791417.1|1491692_1492745_+	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.6e-35
WP_000595401.1|1492766_1493783_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000857182.1|1494901_1495939_-|integrase	site-specific integrase	integrase	E9LT82	Staphylococcus_phage	100.0	2.6e-195
WP_000733771.1|1496022_1496751_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	6.4e-23
WP_001033320.1|1496774_1497503_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.9	2.3e-28
WP_001208482.1|1497698_1498469_-	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_000338186.1|1498627_1498852_+	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
WP_000435341.1|1498869_1499130_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000351243.1|1499153_1499693_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_001148861.1|1500510_1500708_+	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_000939496.1|1500738_1500879_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000275058.1|1500893_1501526_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_001120197.1|1501584_1501905_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066020.1|1501901_1502063_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000291488.1|1502155_1502416_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_001205732.1|1502424_1502688_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_047211354.1|1502684_1504640_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	98.6	0.0e+00
WP_000138475.1|1504641_1505562_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_072353921.1|1505642_1506260_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	98.1	1.3e-85
WP_000934765.1|1506260_1506731_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	96.2	7.7e-78
WP_000148328.1|1506760_1507654_+	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	97.6	1.6e-137
WP_000338527.1|1507660_1507879_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	98.6	4.0e-37
WP_000401978.1|1507887_1508292_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	91.0	6.9e-67
WP_000595265.1|1508632_1508782_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001005262.1|1508940_1509591_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_001570807.1|1509590_1509791_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000282755.1|1509813_1510284_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	99.3	1.7e-69
WP_000406191.1|1510398_1510851_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000817289.1|1510866_1511211_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000919026.1|1511339_1511807_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000133304.1|1511809_1513504_+|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000365299.1|1513517_1513718_+	hypothetical protein	NA	A0A1P8L6D3	Staphylococcus_phage	100.0	5.8e-27
WP_000511067.1|1513723_1514974_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
WP_000032525.1|1514966_1515551_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000849950.1|1515638_1516886_+|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_001252099.1|1516921_1517080_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_001177483.1|1517088_1517421_+|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_000975314.1|1517407_1517743_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_000501244.1|1517742_1518120_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000611454.1|1518116_1518497_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	99.2	2.2e-67
WP_000570652.1|1518497_1519451_+	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000442601.1|1519515_1519962_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570353.1|1520021_1520144_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_001133533.1|1520199_1524849_+|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	94.7	0.0e+00
WP_001154317.1|1524848_1526339_+|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_000582130.1|1526354_1530137_+	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.4	0.0e+00
WP_001000058.1|1530129_1530282_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
1530234:1530251	attR	ATATATACAAGAACAAAA	NA	NA	NA	NA
WP_001262621.1|1530327_1530615_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_000340977.1|1530670_1531045_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000750412.1|1531417_1532191_+	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_011447039.1|1532299_1532476_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|1532528_1532636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|1532687_1532942_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861025.1|1532953_1533709_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.6	7.6e-152
WP_000920038.1|1533899_1534391_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000702263.1|1535888_1536239_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|1536291_1536552_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669791.1|1536862_1537042_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001792928.1|1537999_1539748_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068523.1|1540372_1541659_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|1541858_1541957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|1542199_1542376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|1542634_1543015_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991301.1|1543011_1543908_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645726.1|1543908_1544589_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|1544585_1545458_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221657.1|1545457_1546198_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|1546263_1546827_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966287.1|1546947_1547472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001033971.1|1547531_1548089_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|1548085_1548928_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188043.1|1548984_1550025_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|1550475_1550649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|1551221_1551623_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181316.1|1551892_1552921_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021214.1|1553040_1554420_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001790680.1|1554471_1554645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|1554839_1555769_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|1555821_1556382_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275710.1|1556753_1557851_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.3	1.6e-46
WP_000323164.1|1558055_1559618_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|1559628_1559736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177816.1|1559807_1560602_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|1560621_1561698_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284431.1|1561881_1563351_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040866.1|1563343_1564165_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000011542.1|1564435_1565038_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669861.1|1565018_1565192_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434534.1|1565483_1565810_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827761.1|1565840_1567007_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 3
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	1661005	1683010	2800003	protease	Staphylococcus_phage(94.74%)	21	NA	NA
WP_000206350.1|1661005_1661794_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
WP_001086056.1|1661806_1662262_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.2	6.3e-61
WP_000473596.1|1663158_1664094_+	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|1664095_1665079_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|1665320_1665464_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|1666200_1666344_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092607.1|1666408_1669402_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.0	0.0e+00
WP_000566596.1|1669394_1670639_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|1670654_1671173_+	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|1671182_1672556_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|1672578_1673271_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|1673267_1674029_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|1674025_1674724_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092767.1|1675197_1675764_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	4.3e-99
WP_001005059.1|1676727_1677435_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	7.7e-130
WP_001039444.1|1677559_1678282_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001038859.1|1678339_1679059_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.6	3.2e-131
WP_001038709.1|1679179_1679899_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	9.2e-131
WP_001791797.1|1679963_1680098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028669.1|1680261_1681818_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_047230610.1|1681810_1683010_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.5	1.0e-227
>prophage 4
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	1689738	1736795	2800003	tRNA,transposase	Staphylococcus_phage(94.44%)	44	NA	NA
WP_001549059.1|1689738_1689882_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070814.1|1690485_1690869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375477.1|1690879_1691056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000414202.1|1692184_1692757_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	89.7	3.3e-22
WP_000627541.1|1692857_1693199_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	8.1e-53
WP_000669017.1|1693239_1693866_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	94.7	3.6e-91
WP_000070649.1|1693939_1694935_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
WP_001793444.1|1695015_1695666_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
WP_072419835.1|1695968_1696424_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.3	5.7e-78
WP_000348356.1|1696582_1698061_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.6e-281
WP_000778532.1|1698065_1699067_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.8e-186
WP_000718107.1|1699063_1699321_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|1699386_1699860_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_016169057.1|1699864_1700611_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
WP_000109910.1|1700988_1702581_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000933822.1|1702952_1704146_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366158.1|1704270_1705179_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000453314.1|1705390_1706224_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000623476.1|1706606_1706960_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	98.3	2.0e-22
WP_001200542.1|1706956_1707322_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|1707577_1707880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|1708139_1708853_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001030469.1|1710222_1710666_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|1710652_1711096_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|1711208_1711679_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|1711877_1712102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|1712377_1713232_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989115.1|1713318_1714611_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	3.2e-227
WP_000221179.1|1714610_1714925_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261671.1|1715447_1716950_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.5e-29
WP_000077351.1|1717430_1718474_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.7	1.7e-197
WP_000493886.1|1718480_1719113_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_001159035.1|1719123_1720305_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_001008549.1|1720317_1720782_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001196354.1|1720903_1721905_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001790712.1|1722016_1722136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|1722138_1722966_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|1723539_1723941_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|1724060_1724624_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|1724620_1725574_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025071.1|1725683_1726865_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	6.2e-217
WP_001789004.1|1727152_1729576_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.7	0.0e+00
WP_000836465.1|1729597_1729909_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050543.1|1730234_1736795_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.8	5.9e-301
>prophage 5
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	1860467	1869510	2800003	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005768.1|1860467_1861472_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|1861473_1862499_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|1862521_1863661_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|1863679_1863940_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|1864214_1866494_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594998.1|1866696_1868970_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	6.8e-63
WP_000364542.1|1868991_1869510_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 6
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	1939061	1947391	2800003	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217234.1|1939061_1940879_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.8	1.8e-53
WP_001283055.1|1941102_1942209_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624585.1|1942339_1943017_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683932.1|1943019_1944120_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062177.1|1944233_1945580_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924220.1|1945589_1946480_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|1946605_1947391_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 7
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	2482450	2490923	2800003		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238663.1|2482450_2483017_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	1.0e-28
WP_000030823.1|2483019_2484048_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|2484040_2485525_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|2485503_2487693_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666801.1|2487685_2488357_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|2488358_2488622_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|2488621_2489326_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000009495.1|2489329_2490454_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|2490440_2490923_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 8
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	2510860	2584740	2800003	holin,capsid,tail,bacteriocin,terminase,plate,head,portal,integrase,protease	Staphylococcus_phage(80.88%)	92	2537115:2537141	2581869:2581895
WP_001089097.1|2510860_2512042_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|2512079_2512409_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184953.1|2512646_2513468_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000951692.1|2513460_2514264_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526696.1|2514250_2515924_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190623.1|2515910_2517272_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|2517453_2518392_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620957.1|2518442_2518994_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|2519158_2519374_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_020978112.1|2519437_2519569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081343.1|2519614_2520574_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|2521061_2521418_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719185.1|2521506_2522988_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410716.1|2522993_2523281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795266.1|2523621_2523912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571184.1|2523999_2524641_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_000873930.1|2524637_2524958_-	YxeA family protein	NA	NA	NA	NA	NA
WP_001797239.1|2526967_2527240_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_031893173.1|2527249_2527351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|2528207_2528810_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|2528824_2529001_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|2529199_2530186_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|2530266_2530485_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287268.1|2530694_2531264_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414172.1|2531750_2533262_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021864.1|2533400_2534759_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001793567.1|2534775_2537100_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
2537115:2537141	attL	TATCATTATGACACATTAACACCTAAT	NA	NA	NA	NA
WP_000930266.1|2537660_2539115_-	N-acetylmuramoyl-L-alanine amidase	NA	I1W626	Staphylococcus_phage	98.8	1.2e-286
WP_000339144.1|2539125_2539428_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000466784.1|2539563_2539863_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|2539908_2540073_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|2540065_2540455_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067138.1|2540454_2541921_-|plate	phage baseplate upper protein	plate	A0A2I6PDE3	Staphylococcus_phage	98.2	9.3e-271
WP_000429552.1|2541920_2543831_-	hypothetical protein	NA	A0A2K9VBU3	Staphylococcus_phage	100.0	0.0e+00
WP_000179860.1|2543846_2544137_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384466.1|2544136_2545720_-|tail	phage tail protein	tail	Q4ZD01	Staphylococcus_virus	98.7	1.3e-305
WP_001190533.1|2545728_2546553_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003432.1|2546552_2552753_-|tail	phage tail tape measure protein	tail	A0A2K9VBQ5	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|2552766_2552925_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|2552966_2553317_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|2553374_2553830_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|2553921_2554563_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|2554597_2554993_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|2554993_2555395_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|2555391_2555724_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|2555735_2556014_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|2556082_2557246_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|2557257_2558031_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100668.1|2558014_2559253_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	1.2e-234
WP_000152859.1|2559257_2560949_-|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	99.6	0.0e+00
WP_000778935.1|2560938_2561244_-|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	100.0	2.9e-49
WP_000166257.1|2561369_2561690_-	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	86.8	4.6e-50
WP_000528515.1|2561850_2562288_-	transcriptional regulator	NA	Q4ZCF5	Staphylococcus_virus	99.3	3.6e-77
WP_078055707.1|2562300_2563677_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.3	7.4e-262
WP_000665205.1|2563657_2563948_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_015978074.1|2564081_2564186_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_000884882.1|2564288_2566736_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	99.0	0.0e+00
WP_000265252.1|2567023_2567224_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|2567291_2567444_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000664554.1|2567491_2568016_-	hypothetical protein	NA	A0A0K1LKF9	Staphylococcus_phage	88.5	4.7e-84
WP_000195773.1|2568015_2568210_-	DUF1381 domain-containing protein	NA	A1KX86	Staphylococcus_virus	84.4	7.9e-21
WP_001209217.1|2568226_2568400_-	hypothetical protein	NA	A0A2I6PEA8	Staphylococcus_phage	100.0	3.6e-25
WP_000185699.1|2568436_2568973_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	99.4	1.4e-94
WP_001065025.1|2568965_2569214_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	96.3	5.9e-37
WP_000144705.1|2569206_2569515_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	97.1	9.9e-50
WP_000979209.1|2569511_2569859_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695756.1|2569855_2570260_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000693989.1|2570262_2570469_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_078055706.1|2570482_2570731_-	hypothetical protein	NA	Q8SDR2	Staphylococcus_virus	93.9	1.8e-38
WP_000022732.1|2570730_2570985_-	DUF3310 domain-containing protein	NA	A0A059T7J9	Staphylococcus_phage	100.0	2.8e-42
WP_000113974.1|2570984_2571386_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|2571385_2571571_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_078055713.1|2571583_2573536_-	DNA polymerase	NA	B7T0G8	Staphylococcus_virus	98.9	0.0e+00
WP_000645049.1|2573604_2574162_-	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	95.7	1.3e-92
WP_000762536.1|2574187_2575354_-	DUF2800 domain-containing protein	NA	A0A0K1LKE3	Staphylococcus_phage	99.5	4.5e-220
WP_000279447.1|2575350_2575713_-	hypothetical protein	NA	A0A0K1LKE9	Staphylococcus_phage	95.8	1.7e-53
WP_000291505.1|2575726_2575987_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	94.2	8.4e-42
WP_001817285.1|2576026_2576287_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	98.8	1.3e-39
WP_000072842.1|2576379_2576541_-	DUF1270 family protein	NA	A0A059T7J6	Staphylococcus_phage	94.3	3.6e-19
WP_001124198.1|2576552_2576816_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|2576840_2577056_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|2577102_2577342_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001001356.1|2577338_2577515_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001115060.1|2577598_2577790_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|2577950_2578280_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000524996.1|2578292_2578754_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.0	4.9e-85
WP_000755720.1|2578771_2579206_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	93.1	7.5e-19
WP_000449605.1|2579234_2579630_+	hypothetical protein	NA	I1W601	Staphylococcus_phage	99.2	3.2e-69
WP_001166481.1|2579828_2580452_-	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	1.3e-104
WP_000264194.1|2580578_2581784_+|integrase	site-specific integrase	integrase	B7T0F2	Staphylococcus_virus	100.0	4.2e-221
WP_000928416.1|2582072_2582876_-	TerC family protein	NA	S5MAL1	Bacillus_phage	41.0	4.2e-31
2581869:2581895	attR	TATCATTATGACACATTAACACCTAAT	NA	NA	NA	NA
WP_001049957.1|2583177_2584740_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
>prophage 9
NZ_CP026964	Staphylococcus aureus strain FDAARGOS_2 chromosome, complete genome	2800003	2779027	2793758	2800003		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616840.1|2779027_2779789_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245573.1|2779785_2780742_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|2780728_2781700_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|2781738_2781894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|2782407_2783379_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|2783496_2785602_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2785564_2785963_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|2786763_2787630_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|2787649_2788150_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|2788490_2789996_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|2790073_2790175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429008.1|2790264_2791182_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.8e-07
WP_000197271.1|2791862_2792405_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663032.1|2792699_2793758_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	1.8e-21
