assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001017635.1_ASM101763v1	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	1	33772-34041	1	CRT	no	RT	RT,csa3,cas14j,cas7,cas8c,cas5,cas3	Unclear	GCCAGAGACAAAACCAGA	18	1	2	33790-33807|33790-33807	NZ_CP011350.1_372977-372960|NZ_CP011350.1_677786-677769	NA	6	6	Orphan	csa3,RT,cas3,cas14k,cas14j,DinG,WYL,c2c9_V-U4,DEDDh,cas7,cas8c,cas5	NA|404aa|up_9|NZ_CP011350.1_19571_20783_-,NA|158aa|up_8|NZ_CP011350.1_20800_21274_-,NA|141aa|up_6|NZ_CP011350.1_24369_24792_+,NA|316aa|up_3|NZ_CP011350.1_29586_30534_+,NA|498aa|up_2|NZ_CP011350.1_30566_32060_+,NA|150aa|up_1|NZ_CP011350.1_32075_32525_+,NA|783aa|down_0|NZ_CP011350.1_34639_36988_+,NA|311aa|down_4|NZ_CP011350.1_40837_41770_+,NA|289aa|down_5|NZ_CP011350.1_41771_42638_+,NA|68aa|down_6|NZ_CP011350.1_42679_42883_+,NA|68aa|down_7|NZ_CP011350.1_42950_43154_+,NA|69aa|down_8|NZ_CP011350.1_43226_43433_+,NA|182aa|down_9|NZ_CP011350.1_43519_44065_+	NA|404aa|up_9|NZ_CP011350.1_19571_20783_-	NA	NA|158aa|up_8|NZ_CP011350.1_20800_21274_-	NA	NA|426aa|up_7|NZ_CP011350.1_21381_22659_-	pfam13814, Replic_Relax, Replication-relaxation	NA|141aa|up_6|NZ_CP011350.1_24369_24792_+	NA	NA|485aa|up_5|NZ_CP011350.1_24796_26251_+	cd02202, CetZ_tubulin-like, Cell-structure-related euryarchaeota tubulin/FtsZ homologs	NA|247aa|up_4|NZ_CP011350.1_26285_27026_-	smart00422, HTH_MERR, helix_turn_helix, mercury resistance	NA|316aa|up_3|NZ_CP011350.1_29586_30534_+	NA	NA|498aa|up_2|NZ_CP011350.1_30566_32060_+	NA	NA|150aa|up_1|NZ_CP011350.1_32075_32525_+	NA	NA|132aa|up_0|NZ_CP011350.1_32549_32945_+	pfam14208, DUF4320, Domain of unknown function (DUF4320)	NA|783aa|down_0|NZ_CP011350.1_34639_36988_+	NA	NA|287aa|down_1|NZ_CP011350.1_37699_38560_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|273aa|down_2|NZ_CP011350.1_38576_39395_+	pfam13614, AAA_31, AAA domain	NA|478aa|down_3|NZ_CP011350.1_39411_40845_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|311aa|down_4|NZ_CP011350.1_40837_41770_+	NA	NA|289aa|down_5|NZ_CP011350.1_41771_42638_+	NA	NA|68aa|down_6|NZ_CP011350.1_42679_42883_+	NA	NA|68aa|down_7|NZ_CP011350.1_42950_43154_+	NA	NA|69aa|down_8|NZ_CP011350.1_43226_43433_+	NA	NA|182aa|down_9|NZ_CP011350.1_43519_44065_+	NA
GCF_001017635.1_ASM101763v1	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	2	697165-697533	1,2	CRISPRCasFinder,CRT	no	RT,cas7,cas8c,cas5,cas3	RT,csa3,cas14j,cas7,cas8c,cas5,cas3	Type I-U, Type I-U?,Type I-C	ATTATATTTCAATCCACGCACCTA,ATTTCAATCCACGCACCTANANNAGGTGCGACNT	24,34	0	0	NA	NA	NA:NA	5,5	5	TypeI-U,TypeI-U?,TypeI-C	csa3,RT,cas3,cas14k,cas14j,DinG,WYL,c2c9_V-U4,DEDDh,cas7,cas8c,cas5	NA|193aa|up_9|NZ_CP011350.1_683888_684467_+,NA|212aa|up_8|NZ_CP011350.1_684517_685153_-,NA|210aa|up_7|NZ_CP011350.1_685152_685782_-,NA|238aa|up_6|NZ_CP011350.1_686118_686832_-,NA|76aa|up_3|NZ_CP011350.1_693120_693348_-,NA|142aa|up_1|NZ_CP011350.1_694718_695144_-,NA|306aa|down_5|NZ_CP011350.1_707726_708644_-,NA|131aa|down_7|NZ_CP011350.1_709533_709926_-,NA|270aa|down_8|NZ_CP011350.1_711723_712533_+,NA|575aa|down_9|NZ_CP011350.1_712914_714639_-	NA|193aa|up_9|NZ_CP011350.1_683888_684467_+	NA	NA|212aa|up_8|NZ_CP011350.1_684517_685153_-	NA	NA|210aa|up_7|NZ_CP011350.1_685152_685782_-	NA	NA|238aa|up_6|NZ_CP011350.1_686118_686832_-	NA	NA|801aa|up_5|NZ_CP011350.1_686848_689251_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	RT|622aa|up_4|NZ_CP011350.1_689528_691394_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|76aa|up_3|NZ_CP011350.1_693120_693348_-	NA	NA|364aa|up_2|NZ_CP011350.1_693363_694455_-	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	NA|142aa|up_1|NZ_CP011350.1_694718_695144_-	NA	cas7|52aa|up_0|NZ_CP011350.1_696083_696239_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas7|287aa|down_0|NZ_CP011350.1_698343_699204_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|640aa|down_1|NZ_CP011350.1_699206_701126_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|down_2|NZ_CP011350.1_701126_701846_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|790aa|down_3|NZ_CP011350.1_702051_704421_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|601aa|down_4|NZ_CP011350.1_705514_707317_-	sd00006, TPR, Tetratricopeptide repeat	NA|306aa|down_5|NZ_CP011350.1_707726_708644_-	NA	NA|261aa|down_6|NZ_CP011350.1_708658_709441_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|131aa|down_7|NZ_CP011350.1_709533_709926_-	NA	NA|270aa|down_8|NZ_CP011350.1_711723_712533_+	NA	NA|575aa|down_9|NZ_CP011350.1_712914_714639_-	NA
GCF_001017635.1_ASM101763v1	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	3	704505-705191	2,3,1	CRISPRCasFinder,CRT,PILER-CR	no	RT,cas7,cas8c,cas5,cas3	RT,csa3,cas14j,cas7,cas8c,cas5,cas3	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACGCACCTATATGAGGTGCGAC,ATTTCAATCCACGCACCTATATNAGGTGCGAC,ATTTCAATCCACGCACCTATATGAGGTGCGAC	32,32,32	1	1	704929-704960	NZ_CP011352.1_37079-37048	I-C:I-C:I-C	10,10,3	10	TypeI-U,TypeI-U?,TypeI-C	csa3,RT,cas3,cas14k,cas14j,DinG,WYL,c2c9_V-U4,DEDDh,cas7,cas8c,cas5	NA|76aa|up_7|NZ_CP011350.1_693120_693348_-,NA|142aa|up_5|NZ_CP011350.1_694718_695144_-,NA|306aa|down_1|NZ_CP011350.1_707726_708644_-,NA|131aa|down_3|NZ_CP011350.1_709533_709926_-,NA|270aa|down_4|NZ_CP011350.1_711723_712533_+,NA|575aa|down_5|NZ_CP011350.1_712914_714639_-,NA|490aa|down_6|NZ_CP011350.1_714674_716144_-,NA|570aa|down_7|NZ_CP011350.1_716830_718540_+	NA|801aa|up_9|NZ_CP011350.1_686848_689251_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	RT|622aa|up_8|NZ_CP011350.1_689528_691394_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|76aa|up_7|NZ_CP011350.1_693120_693348_-	NA	NA|364aa|up_6|NZ_CP011350.1_693363_694455_-	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	NA|142aa|up_5|NZ_CP011350.1_694718_695144_-	NA	cas7|52aa|up_4|NZ_CP011350.1_696083_696239_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas7|287aa|up_3|NZ_CP011350.1_698343_699204_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|640aa|up_2|NZ_CP011350.1_699206_701126_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|up_1|NZ_CP011350.1_701126_701846_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|790aa|up_0|NZ_CP011350.1_702051_704421_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|601aa|down_0|NZ_CP011350.1_705514_707317_-	sd00006, TPR, Tetratricopeptide repeat	NA|306aa|down_1|NZ_CP011350.1_707726_708644_-	NA	NA|261aa|down_2|NZ_CP011350.1_708658_709441_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|131aa|down_3|NZ_CP011350.1_709533_709926_-	NA	NA|270aa|down_4|NZ_CP011350.1_711723_712533_+	NA	NA|575aa|down_5|NZ_CP011350.1_712914_714639_-	NA	NA|490aa|down_6|NZ_CP011350.1_714674_716144_-	NA	NA|570aa|down_7|NZ_CP011350.1_716830_718540_+	NA	NA|316aa|down_8|NZ_CP011350.1_719766_720714_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|132aa|down_9|NZ_CP011350.1_720823_721219_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001017635.1_ASM101763v1	NZ_CP011349	Bacillus thuringiensis strain YC-10, complete genome	1	3093813-3093963	1	CRISPRCasFinder	no		csa3,RT,cas3,cas14k,cas14j,DinG,WYL,c2c9_V-U4,DEDDh	Orphan	CGCCGATATATTTTGAAAATCGCTGATATAA	31	1	2	3093844-3093872|3093844-3093872	NZ_CP011349.1_3093964-3093992|NZ_CP011349.1_3671417-3671389	NA	2	2	Orphan	csa3,RT,cas3,cas14k,cas14j,DinG,WYL,c2c9_V-U4,DEDDh,cas7,cas8c,cas5	NA,NA	NA|101aa|up_9|NZ_CP011349.1_3085408_3085711_+	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|434aa|up_8|NZ_CP011349.1_3085725_3087027_+	TIGR00359, NN'-diacetylchitobiose_permease_IIC_component, phosphotransferase system, cellobiose specific, IIC component	NA|106aa|up_7|NZ_CP011349.1_3087036_3087354_+	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|101aa|up_6|NZ_CP011349.1_3087700_3088003_+	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|436aa|up_5|NZ_CP011349.1_3088019_3089327_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|108aa|up_4|NZ_CP011349.1_3089508_3089832_+	cd00215, PTS_IIA_lac, PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit	NA|442aa|up_3|NZ_CP011349.1_3089835_3091161_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|235aa|up_2|NZ_CP011349.1_3091210_3091915_+	PRK02134, PRK02134, chitin disaccharide deacetylase	NA|394aa|up_1|NZ_CP011349.1_3091953_3093135_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|138aa|up_0|NZ_CP011349.1_3093322_3093736_+	smart00754, CHRD, A domain in the BMP inhibitor chordin and in microbial proteins	NA|892aa|down_0|NZ_CP011349.1_3094040_3096716_-	COG3933, COG3933, Transcriptional antiterminator [Transcription]	NA|246aa|down_1|NZ_CP011349.1_3096820_3097558_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|358aa|down_2|NZ_CP011349.1_3097757_3098831_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|442aa|down_3|NZ_CP011349.1_3099362_3100688_+	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|372aa|down_4|NZ_CP011349.1_3100762_3101878_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|375aa|down_5|NZ_CP011349.1_3101915_3103040_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|212aa|down_6|NZ_CP011349.1_3103122_3103758_-	TIGR00257, IMPACT_family_member_HI_0722, uncharacterized protein, YigZ family	NA|281aa|down_7|NZ_CP011349.1_3103994_3104837_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|105aa|down_8|NZ_CP011349.1_3105009_3105324_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|471aa|down_9|NZ_CP011349.1_3105472_3106885_+	pfam00877, NLPC_P60, NlpC/P60 family
