The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	254958	308390	4106389	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|254958_255909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|256078_257305_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|257504_258371_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|258363_259326_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|259426_260377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|260475_261426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|261524_262475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|262471_263965_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|263961_267069_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|267065_270134_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|270130_271381_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|271561_272323_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|272355_273006_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|273008_273848_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|274088_274832_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|274914_275262_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|275359_276202_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|276246_277134_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|277160_277349_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|277446_278904_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|278890_280417_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|280435_280903_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|280902_281925_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|282045_282765_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|282840_283941_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|283942_285133_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|285252_286269_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|286587_287259_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|287255_288164_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|288375_289023_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|292874_293951_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|293961_294771_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|294860_295634_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|295816_296767_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|296655_297678_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|297667_298822_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|298861_300274_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|300398_301265_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|301266_302091_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|302087_302849_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|302929_303616_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|303789_304797_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|304793_305573_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|305630_306893_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|307439_308390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	332787	392284	4106389	transposase,tRNA	Natrialba_phage(12.5%)	52	NA	NA
WP_010929569.1|332787_334707_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|334703_335396_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|335392_336190_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|336196_336958_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|337001_337919_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|337911_338697_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|338730_338913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|339508_340699_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|340937_341318_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|341327_341861_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|341924_342356_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|342358_343057_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|343299_343824_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|343905_344289_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|344448_348561_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|348560_352805_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|352913_353318_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|353558_354734_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|357139_358246_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|359257_360073_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|360069_361020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|361101_361437_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|361461_361896_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|361928_363146_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|363151_363649_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|363856_364792_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|365001_365793_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|365835_367257_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|367412_368363_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|368359_369550_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|369799_370711_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|370712_372851_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|372847_373387_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|373390_374119_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|374105_374999_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|375069_375465_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|375474_376005_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|376450_377401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|377987_378536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|378507_378744_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|378871_379765_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|380934_382182_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|382178_382793_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|382928_383879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|383977_384928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|384970_386227_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|387458_388193_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|388198_388789_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|388813_389503_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|389499_390261_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|390340_391240_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|391333_392284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	402921	455909	4106389	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|402921_403872_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|403965_404280_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|405472_407380_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|407541_408162_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|408193_408775_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|408863_409115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|409116_409959_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|410064_411474_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|411470_412421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|412495_413440_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|413436_415311_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|416658_417363_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|417359_418466_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|418727_419321_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|419317_420505_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|420567_421827_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|421850_422939_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|422946_424047_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|424050_424626_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|424629_425682_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|425812_426820_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|426821_428108_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|428124_428280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|428304_429108_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|429104_429971_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|430045_431176_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|431175_432015_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|432947_433550_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|433579_434233_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|434365_435622_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|435669_436569_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|436644_436920_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|436927_437590_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|437651_438653_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|438667_439216_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|439273_440170_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|440166_441228_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|441263_442214_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|443113_444307_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|444388_445018_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|445079_445763_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|445772_447455_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|447742_448090_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|448180_448498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|448780_449797_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|449872_450673_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|450669_451545_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|451555_452848_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|452890_453931_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|454036_454858_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|454958_455909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	499778	560289	4106389	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|499778_500729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|502172_503075_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|503052_503682_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|503964_505395_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|505428_506058_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|506106_507714_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|507738_508422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|508503_508980_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|509186_510137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|511252_511780_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|511871_512687_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|512747_513482_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|513519_515598_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|515847_516120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|516221_517307_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|517310_519215_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|519211_522886_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|522946_523510_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|523517_523940_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|523967_524387_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|524415_524889_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|524988_525486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|525640_527911_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|527959_529192_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|529290_530241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|530343_530979_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|530975_531869_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|532263_533364_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|533445_533820_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|533879_536744_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|536888_537629_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|537698_538910_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|538938_539907_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|540520_541471_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|541627_541951_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|542055_543096_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|543101_543881_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|543926_544223_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|544248_544524_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|544580_545225_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|545224_545911_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|546040_546892_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|546942_547668_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|547699_549049_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|549160_550093_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|550550_553346_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|553939_556882_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|556953_557673_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|557711_558260_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|558414_559314_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|559338_560289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	568221	621809	4106389	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|568221_569172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|569258_570209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997643.1|570205_571156_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|571254_572052_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|573001_573412_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|574433_575177_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|575220_576264_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|576434_578537_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|579947_580904_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|580922_581414_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|581410_582766_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|582766_583465_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|583461_584163_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|584415_585465_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|585570_586512_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|586508_588398_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|588484_589123_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|589265_590651_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|590581_591118_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|591269_592661_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|592677_593658_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|593793_594777_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|594841_595741_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|595847_597602_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|597609_598734_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|598747_599728_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|600458_601409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|601968_602514_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|602597_604217_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|604232_605387_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|605400_605526_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|605522_607274_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|607270_608950_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|609012_609561_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|610703_610982_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|612025_612976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|613253_613415_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|613422_613563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|614081_614531_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|614540_615152_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|615310_616165_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|616184_617567_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|617631_618273_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|618412_618871_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|618895_619672_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|619725_620862_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|620858_621809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	890194	949494	4106389	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|890194_891145_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|892468_893245_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|893279_895052_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|895053_895956_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|896080_896440_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|896471_897434_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|897532_898483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|898495_899431_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|899490_900330_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|900326_901496_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|901492_902782_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|902824_903199_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|903304_904042_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|904049_904754_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|905017_906538_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|906593_907157_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|907175_908207_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|908203_908992_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|909012_909171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|909167_910157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|911913_912864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|914086_914989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|914990_915845_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|915891_917001_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|917011_917530_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|917559_918192_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|918263_918923_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|918919_920140_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|920408_921281_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|921436_922174_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|922176_923808_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|923903_924893_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|924889_925600_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|925695_926712_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|926983_927610_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|927665_928793_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|928798_934516_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|935083_936028_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|936216_937152_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|937269_938841_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|938920_940129_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|940626_941544_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|943904_944126_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|944456_945473_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|945557_945809_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|945812_946628_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|946740_947619_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|947730_949494_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 8
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	955649	1009390	4106389	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|955649_956600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|956695_957667_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|957671_958352_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|958489_958882_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|958989_960006_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|960245_961031_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|961125_962535_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|962545_963346_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|963366_964137_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|964179_964647_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|964643_965594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|967542_968421_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|969347_972326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|972679_973630_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|973626_974715_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|974750_975614_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|976753_977143_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|977146_977929_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|977962_978748_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|979023_980163_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|980159_980951_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|980947_981697_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|981693_982566_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|982565_983567_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|983563_984727_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|984752_985436_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|985389_986724_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|986716_987811_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|988577_989528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|991468_992728_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|992724_994263_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|994259_995456_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|995452_996829_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|996840_997857_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|997925_999161_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|999261_1000056_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|1000425_1000833_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|1001250_1001523_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|1001692_1001917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|1002104_1002959_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|1003059_1003362_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|1003406_1004024_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|1004040_1004349_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|1004345_1006061_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|1006063_1006681_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|1006781_1007366_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|1007390_1008035_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|1008439_1009390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1058328	1098278	4106389	protease,transposase,integrase,tRNA	Pseudomonas_phage(33.33%)	28	1055576:1055594	1075464:1075482
1055576:1055594	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|1058328_1058925_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|1058921_1059704_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|1059776_1060868_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|1061147_1062275_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|1062616_1063663_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|1063810_1066930_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|1066931_1069883_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|1069898_1071110_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1071293_1072244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|1072260_1072755_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|1072758_1073016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|1073559_1074471_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|1074552_1074837_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|1075620_1076571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
1075464:1075482	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|1076989_1079554_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|1079598_1081452_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|1081784_1083356_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1084797_1085748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|1085833_1086574_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|1086800_1087748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1089135_1090086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|1090279_1091095_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|1091227_1092667_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|1092680_1093022_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|1093076_1094732_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|1094883_1095894_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|1096026_1096800_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1097327_1098278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1108205	1155823	4106389	protease,transposase,holin,tRNA	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|1108205_1109156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|1109294_1110047_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|1110285_1112010_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|1112029_1113289_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|1113303_1114398_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|1114394_1116521_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|1116533_1117214_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|1117491_1118865_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|1118866_1119886_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|1119949_1120921_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1120985_1121936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|1122034_1122877_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|1122876_1123212_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|1123282_1124701_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|1124980_1126021_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|1126100_1126352_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|1126462_1127626_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|1127909_1128764_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|1128760_1129651_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|1129693_1130605_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|1130631_1131324_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|1131338_1132319_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|1132331_1134473_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|1134521_1135490_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|1135480_1136149_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|1136109_1137045_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|1137041_1137938_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|1137934_1138657_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|1138647_1138812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|1138985_1139489_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|1139765_1140881_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|1141023_1141488_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|1141635_1142175_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|1142196_1143531_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|1143544_1143850_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|1144274_1144856_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1144937_1145888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1145986_1146937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|1147377_1148283_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|1148338_1149943_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|1150199_1151705_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|1151719_1152184_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|1152473_1153424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|1153586_1154117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|1154116_1154428_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|1154872_1155823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1331682	1435124	4106389	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|1331682_1332798_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1332898_1333717_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1333814_1334426_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1334585_1335962_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1336024_1336483_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1336567_1337263_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1337324_1337606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1338168_1338921_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1338965_1340042_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1340038_1340989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1341091_1341754_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1341848_1342019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1342371_1343373_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1343375_1344572_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1344592_1345396_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1345476_1345773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1345803_1346367_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1346407_1347265_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1347272_1348022_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1348043_1348916_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1348944_1349724_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1349757_1350555_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1353209_1353602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1353595_1354456_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1354459_1355422_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1356198_1356888_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1357748_1358699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1359048_1359918_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1359988_1360684_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1360673_1361183_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1361179_1362400_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1362347_1363250_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1364136_1365423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1365461_1366835_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1366873_1367575_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1367873_1368863_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1368963_1369425_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1369440_1369989_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1370130_1371606_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1371711_1372803_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1372806_1373589_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1373598_1374387_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1375512_1375947_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1375943_1376954_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1376997_1377924_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1378210_1378579_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1378795_1379746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1379790_1382217_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1382265_1382958_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1383030_1384230_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1384247_1385153_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1385268_1386198_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1386223_1387570_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1387597_1388347_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1388360_1389143_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1389335_1390286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1390347_1391457_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1391969_1392806_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1392875_1393841_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1393837_1394788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1395173_1395716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1396751_1397702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1397800_1398751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1398992_1399361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1399406_1400531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1401665_1402418_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1402509_1403130_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1403233_1404184_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1404180_1406289_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1406433_1407093_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1407124_1407589_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1407864_1408050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1408101_1408854_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1408860_1410123_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003820806.1|1412480_1413608_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1413618_1414446_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1414432_1415299_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1416665_1417070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1417161_1418112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1418481_1419393_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1419407_1420118_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1420114_1421359_+	aconitase X catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1421360_1421795_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1421823_1422129_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1422227_1423178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1423234_1424389_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1424463_1425414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1425945_1426743_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1426790_1427444_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1427400_1428489_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1428653_1430879_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1433156_1434053_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1434173_1435124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1465510	1536481	4106389	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1465510_1466461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1466517_1467630_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1470013_1470964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1471554_1472331_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1472448_1472712_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1472812_1473817_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1474017_1475619_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1475644_1476403_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1476494_1477151_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1477241_1478006_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1478015_1478204_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1478259_1479303_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1479299_1479713_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1479709_1480330_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1480610_1481561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1481728_1483120_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1483192_1483771_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1483887_1485285_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1485400_1486606_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1486705_1487224_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1487318_1487564_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1487791_1488106_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1488195_1493385_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1493381_1495550_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1495605_1497921_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1497925_1499245_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1499263_1500937_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1500941_1501610_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1501766_1505588_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1505918_1506869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1506890_1508036_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1508184_1509114_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1509110_1510199_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1510195_1510999_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1510995_1511727_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1511784_1513074_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1513170_1513773_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1518326_1518665_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1519372_1519639_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1521345_1522296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1522292_1523624_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1524884_1526885_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1526877_1527519_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1527515_1527923_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1527919_1528720_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1528794_1529499_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1529530_1530325_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1530321_1531272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1531370_1532321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1532419_1532854_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1532936_1535273_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1535464_1536481_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1577552	1659687	4106389	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_010929591.1|1577552_1578503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1578590_1580243_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1580253_1581042_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1581041_1581512_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1581586_1582900_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1582953_1583559_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1583875_1584826_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1584822_1585773_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1586033_1587062_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1587141_1588440_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1588436_1589018_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1589330_1593377_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1593617_1601279_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1601275_1602226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1603365_1603839_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1603978_1604599_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1604734_1605535_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1605589_1606681_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1606702_1607146_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1607174_1607807_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1607917_1608334_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1608326_1609019_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1609125_1609500_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1609576_1610386_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1610481_1611426_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1611464_1612436_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1612526_1612964_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1613022_1613904_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1614907_1615768_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1615800_1617183_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1617179_1618199_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1618571_1619066_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1619073_1619814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1619894_1621499_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1621538_1622327_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1623529_1624618_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1625498_1626311_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1626323_1626632_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1626749_1628480_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1628481_1629627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810957.1|1630545_1631013_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1631148_1632531_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1632527_1633652_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1633648_1636285_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1636700_1637651_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1641397_1642009_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1642231_1643692_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1643788_1645381_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1645734_1645992_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1645993_1647334_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1647429_1648119_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1648131_1649562_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1651286_1652108_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1652118_1653690_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1653718_1654696_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1654722_1655526_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1655522_1656317_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1656324_1657560_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1657552_1657987_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1658736_1659687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1663798	1704467	4106389	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1663798_1664749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1664789_1665860_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1665882_1666761_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1666932_1667904_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1668066_1668909_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1669070_1669751_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1669744_1670914_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1670910_1671942_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1671985_1673227_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1673261_1674794_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1674874_1675498_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1675528_1676140_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1676175_1676646_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1677077_1678082_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1678118_1679633_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1679636_1680596_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1680624_1681428_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1681429_1683064_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1683147_1684209_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1684407_1684677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1684680_1685205_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1685620_1686571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1686567_1687602_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1687710_1688349_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1688643_1688871_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1688993_1689707_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1689951_1690902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1691005_1691287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1691401_1692850_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1692960_1693911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1693907_1694357_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1694551_1695502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1695837_1696035_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1696050_1696410_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1696484_1697507_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1697519_1699937_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1699942_1700284_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1700342_1700753_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1701252_1702344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1702527_1703124_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1703223_1703406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1703516_1704467_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1784144	1836297	4106389	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1784144_1785095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1785261_1785615_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1785627_1785990_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1786031_1786457_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1786659_1787916_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1788114_1789095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1789244_1790486_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1790584_1791535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1791543_1792239_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1795060_1795660_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1795670_1797836_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1797859_1799644_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1799643_1799733_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1800427_1800700_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1800699_1802766_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1802762_1803713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1803811_1804762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1804877_1805210_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1805206_1805893_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1805879_1806839_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1806880_1809241_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1809240_1809873_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1809974_1811315_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1811361_1812717_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1812842_1813487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1813431_1813749_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1814021_1814537_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1814630_1814792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1814807_1815563_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1815901_1816108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1816115_1816775_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1817069_1819274_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1819384_1820608_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1820730_1821705_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1821772_1822966_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1822980_1823781_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1823777_1825634_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1825630_1826236_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1826254_1827640_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1828365_1829592_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1829680_1830463_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1830561_1831512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1831538_1832312_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1832323_1833565_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1835346_1836297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1880222	1948309	4106389	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1880222_1880711_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1880828_1881407_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1881512_1881881_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1881979_1882930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1882936_1884049_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1884735_1885938_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1885973_1886120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1886141_1888802_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1888814_1892219_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1892886_1895112_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1895158_1895485_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1895535_1896144_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1896242_1897193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1897262_1898027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1898023_1898623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1898726_1899578_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1899637_1900264_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1900260_1901211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1901309_1902422_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1902411_1903413_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1903518_1905030_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1905026_1906331_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1906442_1907003_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1907270_1907825_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1908280_1908496_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1908750_1911348_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1911344_1912532_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1913191_1913806_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1913894_1915022_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1915033_1915939_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010929577.1|1916831_1917782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1917963_1918716_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1918784_1919444_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1919440_1920169_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1920181_1922461_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1922485_1922689_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1922730_1923363_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1923498_1924416_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1924412_1925126_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1925363_1926134_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1926138_1926738_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1926982_1928473_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1928531_1928816_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1928953_1929109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1929381_1930308_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1930444_1931185_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1931351_1932728_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1932909_1933815_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1935466_1937269_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1937395_1938037_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1938135_1939086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1939107_1940328_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1940513_1941926_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1941989_1943057_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1943056_1944544_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1944553_1945498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1945657_1946356_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1946433_1947339_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1947358_1948309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	1984258	2039849	4106389	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1984258_1985209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1985267_1986041_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1986033_1987590_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1987586_1988537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1989863_1990466_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1990705_1991407_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1991400_1992183_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1992367_1993318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1993416_1994154_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1994343_1995102_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1995148_1996138_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1996315_1997284_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1998823_1999792_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1999800_2000742_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2001215_2002226_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|2002216_2003731_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|2003727_2005074_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|2005076_2006111_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|2006160_2007786_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|2008338_2009289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|2009393_2010341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|2010394_2012209_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|2012201_2012876_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|2013005_2016080_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|2016093_2016393_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|2016707_2017331_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|2017574_2018444_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|2018421_2019366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|2019451_2020378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|2020490_2021270_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|2021260_2022457_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|2022487_2023438_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|2023659_2024349_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|2024413_2025169_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|2025220_2026213_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2026222_2027176_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|2027291_2028254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|2029655_2030084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2030080_2031031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|2031324_2032062_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|2032485_2033673_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|2033676_2034057_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|2035776_2036748_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|2036761_2037475_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|2037479_2038397_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|2038503_2038800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2038898_2039849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	2273656	2343308	4106389	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|2273656_2276314_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2276391_2277594_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2277590_2278103_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2278225_2278663_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2278939_2279890_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|2279988_2280939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|2281192_2282998_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2283111_2283279_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2283342_2283579_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2283947_2285147_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2286662_2287613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2288064_2289066_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2289238_2290096_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2290092_2291355_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2291455_2291830_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2291902_2293090_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2293174_2293945_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2294058_2294823_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2294773_2296075_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2296071_2296878_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2298622_2299594_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2299750_2300263_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2300421_2301396_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2302396_2303191_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2303216_2304023_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2304133_2304724_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2304734_2305913_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2306015_2306390_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2306642_2307974_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2308040_2311271_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2312761_2313508_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2313592_2314054_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2314091_2315150_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2315112_2316942_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2316981_2317554_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2318978_2319800_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2320118_2321441_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2321800_2322436_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2322395_2323346_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2324216_2325089_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2325166_2326306_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2326664_2327921_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2327926_2328454_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2328458_2329277_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2329276_2329999_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2330020_2330335_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2330352_2331501_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2331531_2332407_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2332403_2333723_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2333795_2334992_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2335002_2336490_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2339084_2339984_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2340121_2341087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2341185_2342136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2342357_2343308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	2354804	2403161	4106389	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2354804_2355755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2355853_2356150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2356324_2357677_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2357819_2358836_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2360815_2361829_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2361915_2362821_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2362977_2363322_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2363479_2363938_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2363951_2366168_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2366164_2367226_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2367254_2368229_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2368180_2368999_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2369011_2369620_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2369794_2370190_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2370208_2371648_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2371676_2372024_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2372042_2372993_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2373645_2374596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2374679_2376497_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2376570_2377218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2377230_2378160_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2378329_2378794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2379041_2379722_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2379770_2381462_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2381477_2382029_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2382025_2382397_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2382509_2383346_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2383356_2383881_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2383978_2384158_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2384287_2385262_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2385392_2385749_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2385738_2386614_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2386712_2387597_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2387618_2388914_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2389862_2390513_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2390600_2392121_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2392378_2394244_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2395289_2396240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2396257_2396398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2397212_2397572_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2397559_2398996_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2398992_2399646_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2399642_2400836_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2400939_2402214_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2402210_2403161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	2414365	2482741	4106389	protease,transposase,tRNA	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2414365_2415316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2415275_2415689_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2415973_2416273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2416682_2418965_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2419430_2419625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2419650_2421681_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2421700_2421913_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2422190_2422730_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2422843_2424139_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2424215_2425373_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2425556_2426456_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2426474_2427779_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2427744_2428851_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2428938_2429175_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2429313_2430384_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2430387_2431743_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2431769_2432930_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2432932_2433571_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2433572_2434859_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2434917_2436213_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2436219_2436726_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2436722_2437871_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2437898_2438324_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2438646_2441529_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2441621_2442377_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2443142_2444492_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2444590_2445541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2445639_2446590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2446663_2447137_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2447162_2448371_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2448367_2449141_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2449140_2449764_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2449929_2450190_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2450493_2451075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2451141_2451396_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2451382_2454007_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2454078_2454897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2454893_2455499_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2455536_2456670_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2458385_2458760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2458857_2460132_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2460135_2461713_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2462619_2463975_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2463971_2465606_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2465598_2466429_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2466446_2467391_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2467443_2469018_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2469065_2469425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2469417_2469738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2469853_2470786_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2470888_2471845_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2471994_2473332_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2473336_2474593_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2474788_2475835_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2475892_2476261_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2476391_2477264_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2477340_2478243_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2479299_2480517_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2481790_2482741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	2536074	2593353	4106389	transposase,tRNA	Klosneuvirus(15.38%)	49	NA	NA
WP_005012067.1|2536074_2537025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930544.1|2537123_2538425_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930543.1|2539177_2540143_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2540132_2542994_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2542996_2543503_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2543607_2544816_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2544817_2545756_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2545917_2546391_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2546387_2547338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2547448_2547889_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2548017_2549247_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2549285_2550107_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2550160_2551312_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2551403_2551892_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2554442_2556992_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2557062_2559636_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2559901_2560102_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2560133_2560295_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2560352_2560691_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2560839_2561790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2562564_2563233_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2563214_2565230_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2565412_2566162_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2566174_2567038_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2567041_2568457_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2568590_2569319_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2569457_2569658_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2569833_2570232_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2570255_2571656_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2571774_2572527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2572815_2573415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2573519_2574299_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2574295_2575180_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2575197_2575977_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2575961_2576720_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2576845_2577493_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2577760_2578777_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2578874_2579915_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2580049_2581342_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2582701_2583085_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2583102_2583690_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2583727_2584678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2584776_2585337_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2585333_2585879_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2586074_2587103_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2587143_2588484_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2588592_2589597_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2589703_2592304_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2592402_2593353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	2839934	2898178	4106389	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2839934_2840885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2841364_2842021_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2842035_2843703_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2843705_2844335_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2844546_2845641_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2845785_2846598_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2846601_2848305_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2848355_2849486_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2849672_2850749_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2850830_2851481_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2851495_2852899_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2853182_2854001_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2853997_2854702_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2855601_2856717_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2856750_2857125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2857147_2858305_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2858317_2858551_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2859185_2862155_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2862169_2862379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2862530_2863160_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2863156_2865247_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2865270_2865951_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2865947_2866508_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2866514_2867612_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2867764_2868358_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2868354_2869647_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2869660_2870203_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2870212_2871049_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2871082_2872144_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2872185_2873238_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2873253_2873556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2873697_2874648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2874826_2876521_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2876517_2877603_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2877650_2878550_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2878560_2879205_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2880226_2883469_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2883479_2884634_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2884860_2885823_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2885921_2886872_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2886970_2887921_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2887930_2888620_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2888679_2889117_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2889162_2890056_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2890103_2891276_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2891272_2892427_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2892623_2892974_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2892963_2893398_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2893414_2894365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2894512_2894980_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2894960_2896118_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2896183_2897110_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2897227_2898178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	2940458	3006958	4106389	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2940458_2941409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2941778_2942351_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2942353_2943364_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2943356_2943857_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2943867_2944209_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2944220_2945012_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2945028_2945298_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2945320_2946109_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2946155_2947172_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2947388_2948831_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2949009_2950629_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2950749_2952570_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2952648_2954181_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2954214_2955861_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2955930_2956953_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2956970_2958104_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2958106_2958796_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2958795_2959581_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2959624_2960389_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2960427_2961849_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2961914_2962619_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2962666_2963086_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2963098_2963506_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2963689_2964400_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2964526_2964817_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2964834_2965317_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2969822_2970977_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2971282_2972299_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2972545_2973334_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2973400_2974081_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2974077_2974848_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2974946_2975897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2975952_2976870_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2976880_2978059_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2978078_2979074_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2980662_2981271_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2981258_2982299_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2982316_2983279_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2983275_2984469_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2984465_2985263_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2985288_2986275_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2986293_2988333_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2988534_2989215_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2989228_2990140_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2990136_2990715_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2990853_2991759_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2991766_2995186_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2995173_2997774_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2998729_2999362_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2999755_3000514_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|3000510_3001713_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|3001900_3002851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|3003758_3004904_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|3004890_3005646_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|3005762_3005942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|3006007_3006958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	3190410	3342057	4106389	transposase,holin,tRNA	uncultured_Mediterranean_phage(15.79%)	117	NA	NA
WP_010929956.1|3190410_3191361_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|3191459_3192341_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|3192418_3193798_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|3193836_3194682_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|3194697_3195042_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|3195044_3195581_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|3195753_3196329_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|3196431_3197169_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|3197236_3198874_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|3198981_3199737_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|3199724_3200687_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|3200788_3201589_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|3201650_3203726_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|3203890_3206266_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|3206346_3207702_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|3209180_3209903_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|3209957_3210941_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3211070_3212021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|3212017_3212920_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|3213007_3213766_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_047122789.1|3213778_3214870_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|3214967_3216395_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|3216624_3217839_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|3217884_3220755_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|3223165_3223654_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|3223779_3226476_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|3226630_3228913_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|3229085_3229709_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|3229807_3230758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|3230804_3231359_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|3231426_3232272_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|3232341_3233310_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|3237005_3240932_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|3241667_3244898_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|3245179_3246007_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|3246040_3246736_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|3246728_3248009_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|3248018_3248996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|3248977_3250678_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|3250780_3251884_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|3251914_3252670_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|3252676_3254197_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|3254239_3254542_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|3254538_3255171_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|3255249_3257115_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|3257111_3257906_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|3257934_3259050_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|3259954_3260833_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|3260832_3261657_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|3261824_3262775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|3262987_3265837_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|3265818_3266547_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|3266687_3268151_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|3268147_3268519_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|3268536_3269850_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|3269886_3270345_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3270457_3271408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3271506_3272457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|3272453_3273467_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|3273606_3274593_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|3274951_3275659_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|3276239_3277190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|3277341_3277944_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|3277962_3278595_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|3278639_3278891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|3278832_3280719_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|3280737_3281580_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|3281576_3282935_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|3283155_3283950_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|3284180_3285674_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|3285909_3287991_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|3288185_3289226_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|3289360_3290377_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|3290398_3291256_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|3291300_3292077_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|3292444_3293395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|3293421_3293886_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|3295092_3297381_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|3297497_3298370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|3298412_3299567_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|3299601_3300432_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|3300515_3302060_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|3302102_3302462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|3302463_3302877_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|3302917_3303235_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|3303319_3304036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|3304299_3305721_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|3305787_3308535_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|3308867_3309884_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|3310220_3310862_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|3310952_3312389_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3312546_3313620_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3313616_3314753_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3314896_3315241_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3315307_3317188_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3317237_3318173_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3318505_3319522_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3320459_3321887_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3321883_3322906_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3322895_3323369_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3323509_3324397_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3324393_3326037_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3326033_3327083_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3327871_3328888_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3328987_3329620_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3329628_3330018_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3330070_3331123_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3331986_3333693_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3333766_3334267_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3334281_3336339_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3336365_3336659_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3336760_3337708_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3337720_3338596_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3338716_3339277_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3339311_3339635_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3340070_3340808_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3341106_3342057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	3363008	3435496	4106389	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3363008_3363959_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3364001_3365177_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3365398_3367189_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3367201_3368863_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3368875_3371581_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3371873_3373628_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3373624_3374251_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3374247_3375099_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3375174_3377289_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3377475_3378090_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3378235_3378487_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3378556_3379939_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3379935_3383115_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3383922_3384840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3384891_3385623_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3385682_3386255_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3387763_3388780_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3388917_3389967_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3390071_3391022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3391117_3391843_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3392053_3392434_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3392739_3393612_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3393619_3394000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3394153_3395428_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3396915_3397824_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3398621_3399686_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3401516_3402518_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3402740_3403382_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3403464_3405291_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3405534_3406464_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3406463_3407213_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3407284_3408199_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3408218_3409364_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3409424_3410336_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3410416_3411367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3411465_3412050_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3412084_3413074_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3413070_3414012_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3414008_3415229_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3415271_3415586_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3415777_3416137_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3416138_3417854_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3418041_3418713_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3418727_3420056_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3420052_3420952_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3421038_3422124_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3422116_3423250_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3423249_3425931_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3426301_3426883_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3427008_3427734_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3427730_3428408_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3428623_3429805_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3430577_3430760_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3430789_3431740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3431869_3432262_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3432538_3433450_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3433574_3434549_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3434545_3435496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	3449003	3502521	4106389	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3449003_3449954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3450066_3450318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3450823_3451942_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3452061_3452274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3452433_3452655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3452707_3453658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3454834_3456205_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3456237_3457029_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3457041_3458097_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3458122_3458998_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3459103_3459352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3459386_3460841_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3460837_3461359_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3461387_3462740_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3462963_3465852_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3467996_3469298_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3469312_3470029_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3470310_3470991_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3471002_3471170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3471278_3471425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3471518_3472178_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3472576_3474409_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3474405_3475356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3476519_3478235_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3478245_3478737_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3478809_3479826_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3479993_3480773_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3480791_3481319_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3481612_3481882_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3481972_3484132_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3484252_3484972_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931070.1|3484968_3485919_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3486059_3487277_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3487270_3487882_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3488515_3489493_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3489636_3490383_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3490404_3490851_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3491638_3493870_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3493892_3494693_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_047122792.1|3494974_3496207_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3496317_3497307_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3497337_3498726_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3500324_3501308_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3501504_3502521_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	3566979	3640141	4106389	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3566979_3567930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3567926_3568946_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3568955_3571664_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3571811_3572468_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3572566_3573517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3573664_3574558_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3574757_3576452_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3576486_3577413_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3577481_3578579_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3578597_3579461_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3579472_3580255_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3580251_3581370_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3581366_3582899_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3582939_3583947_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3584091_3584814_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3584829_3585852_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3586168_3586903_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3586987_3588733_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3588729_3589482_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3589526_3590483_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3590571_3591138_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3591145_3592006_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3592035_3592764_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3592795_3593479_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3594316_3595231_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3595295_3596204_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3596294_3597719_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3597720_3599043_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3599039_3601178_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3601255_3606376_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3606476_3606785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3606854_3607412_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3607427_3608909_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3611079_3612417_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3612451_3614449_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3614466_3616515_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3616645_3617512_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3617780_3618746_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3618860_3620009_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3620433_3620745_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3620778_3621039_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3621188_3622322_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3622392_3623529_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3623694_3624489_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3624551_3624995_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3625110_3626061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3626162_3626591_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3626663_3628859_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3629080_3630031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3629990_3630515_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3630646_3631618_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3631737_3634182_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3634197_3634788_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3635031_3635982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3636139_3637405_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3637438_3638536_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3639190_3640141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4106389	3651428	3751540	4106389	transposase,tail,protease,terminase,tRNA	uncultured_Caudovirales_phage(14.29%)	106	NA	NA
WP_005012067.1|3651428_3652379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3653110_3653488_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3653472_3654174_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3654317_3655010_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3655009_3656113_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3656222_3658595_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3658591_3660151_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3660175_3660973_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3661004_3662150_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3662254_3663697_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3663699_3664929_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3667066_3668017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3669146_3669704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3669679_3670030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3670198_3670993_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3670989_3672039_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3672038_3672728_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3672814_3673312_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3673343_3674660_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814643.1|3675686_3676145_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3676144_3676825_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3676827_3677256_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3677308_3679039_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3679104_3679677_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3679657_3680344_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3680699_3681371_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3681699_3681921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3681920_3682202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3682198_3682714_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3682713_3683265_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3683243_3683486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3683490_3684303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3684302_3684566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3684606_3684804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3684784_3685201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3685205_3689162_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3689154_3689544_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3689540_3690074_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3690141_3690501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3690510_3693123_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3693148_3693439_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3693456_3693786_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3693795_3694314_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3694568_3695069_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3695076_3695499_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3695495_3695894_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3695890_3696286_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3696285_3696474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3696487_3696970_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3697032_3697284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3697958_3698909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3699337_3699940_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3700062_3700305_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3700310_3701366_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3701394_3702813_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3702815_3704093_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3704079_3704565_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3705204_3706155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3706411_3707101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3707093_3707345_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3707899_3708511_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3708582_3708789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3709040_3709991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3710089_3711163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3711330_3712125_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3712164_3712689_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3712681_3714424_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3714633_3715392_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3715394_3716102_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3716118_3717000_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3717010_3717769_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3717737_3718493_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3718562_3719981_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3720002_3720653_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3720786_3721122_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3721210_3722161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3722237_3724058_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3724062_3725136_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3725258_3726227_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3726300_3727212_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3727230_3727803_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3727883_3728432_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3728431_3730021_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3730090_3730330_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3730370_3731396_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3731461_3732643_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3732739_3733192_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3733201_3734542_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3734858_3735896_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3736277_3736637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3736720_3737662_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3737736_3738687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3738980_3740075_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3740156_3741038_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3741059_3741899_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3741974_3743492_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3743588_3744689_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3744705_3745128_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3745150_3745363_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3745409_3746330_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3746512_3747262_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3747264_3747594_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3747800_3749234_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3749245_3749629_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3749690_3750491_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3750589_3751540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
