assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001007915.1_ASM100791v1	NZ_CP011416	Escherichia coli strain CFSAN029787 chromosome, complete genome	1	1067754-1068087	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACNC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,27,29	0	0	NA	NA	I-E:I-E:I-E	5,4,3	5	TypeI-E	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	NA,NA	NA|254aa|up_9|NZ_CP011416.1_1059627_1060389_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP011416.1_1060369_1061419_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP011416.1_1061415_1061895_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP011416.1_1061894_1062605_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP011416.1_1062623_1062935_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP011416.1_1063128_1063452_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP011416.1_1063501_1064107_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP011416.1_1064106_1065534_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP011416.1_1065535_1066444_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP011416.1_1066695_1067733_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP011416.1_1068183_1068477_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP011416.1_1068473_1069397_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP011416.1_1069393_1070044_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP011416.1_1070025_1070772_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP011416.1_1070782_1071838_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP011416.1_1071849_1072386_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP011416.1_1072382_1073945_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP011416.1_1074042_1076742_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP011416.1_1076936_1077089_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP011416.1_1077353_1078088_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001007915.1_ASM100791v1	NZ_CP011416	Escherichia coli strain CFSAN029787 chromosome, complete genome	2	1093787-1094791	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,16,16	16	Unclear	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	NA,NA|47aa|down_1|NZ_CP011416.1_1095940_1096081_+	NA|122aa|up_9|NZ_CP011416.1_1081988_1082354_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_8|NZ_CP011416.1_1082431_1083703_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_7|NZ_CP011416.1_1083693_1083954_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|NZ_CP011416.1_1083970_1084546_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_5|NZ_CP011416.1_1084693_1085587_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_4|NZ_CP011416.1_1085550_1086330_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_3|NZ_CP011416.1_1086307_1087717_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_2|NZ_CP011416.1_1087738_1089193_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_1|NZ_CP011416.1_1089262_1090048_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_0|NZ_CP011416.1_1090366_1091644_+	cd06174, MFS, Major Facilitator Superfamily	NA|224aa|down_0|NZ_CP011416.1_1095130_1095802_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP011416.1_1095940_1096081_+	NA	NA|433aa|down_2|NZ_CP011416.1_1097026_1098325_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP011416.1_1098412_1100050_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP011416.1_1100277_1101069_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP011416.1_1101139_1101475_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP011416.1_1101474_1101723_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP011416.1_1101800_1104035_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP011416.1_1104082_1105384_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP011416.1_1105440_1108197_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_001007915.1_ASM100791v1	NZ_CP011416	Escherichia coli strain CFSAN029787 chromosome, complete genome	3	3430973-3431069	3	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	NA,NA	NA|454aa|up_9|NZ_CP011416.1_3418842_3420204_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP011416.1_3420260_3421562_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP011416.1_3421583_3422729_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP011416.1_3422857_3423643_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP011416.1_3423653_3424889_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP011416.1_3424910_3425960_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP011416.1_3426276_3427944_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP011416.1_3427953_3429213_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP011416.1_3429223_3430039_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP011416.1_3430035_3430929_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP011416.1_3431133_3432201_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP011416.1_3432197_3432707_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP011416.1_3432824_3433547_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP011416.1_3433549_3434044_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP011416.1_3434217_3435603_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP011416.1_3435638_3436160_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP011416.1_3436267_3436480_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP011416.1_3436481_3437348_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP011416.1_3437828_3438371_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP011416.1_3438590_3439283_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_001007915.1_ASM100791v1	NZ_CP011416	Escherichia coli strain CFSAN029787 chromosome, complete genome	4	3671273-3671418	4	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	53	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	NA,NA|56aa|down_3|NZ_CP011416.1_3674201_3674369_-,NA|201aa|down_4|NZ_CP011416.1_3674611_3675214_+,NA|94aa|down_6|NZ_CP011416.1_3675744_3676026_-	NA|50aa|up_9|NZ_CP011416.1_3660253_3660403_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP011416.1_3660568_3661342_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP011416.1_3661341_3662031_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP011416.1_3662033_3663092_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP011416.1_3663092_3663911_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP011416.1_3664065_3665061_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP011416.1_3665101_3666055_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP011416.1_3666238_3667291_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP011416.1_3667366_3668800_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP011416.1_3668982_3671244_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP011416.1_3671477_3672761_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|357aa|down_1|NZ_CP011416.1_3672895_3673966_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|73aa|down_2|NZ_CP011416.1_3673943_3674162_-	pfam07825, Exc, Excisionase-like protein	NA|56aa|down_3|NZ_CP011416.1_3674201_3674369_-	NA	NA|201aa|down_4|NZ_CP011416.1_3674611_3675214_+	NA	NA|74aa|down_5|NZ_CP011416.1_3675424_3675646_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|94aa|down_6|NZ_CP011416.1_3675744_3676026_-	NA	NA|64aa|down_7|NZ_CP011416.1_3676036_3676228_-	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|61aa|down_8|NZ_CP011416.1_3676200_3676383_-	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|227aa|down_9|NZ_CP011416.1_3676379_3677060_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain
GCF_001007915.1_ASM100791v1	NZ_CP011416	Escherichia coli strain CFSAN029787 chromosome, complete genome	5	4369277-4369400	5	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,DinG	NA,NA|30aa|down_7|NZ_CP011416.1_4378296_4378386_+	NA|471aa|up_9|NZ_CP011416.1_4358730_4360143_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP011416.1_4360699_4360909_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP011416.1_4361364_4361991_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP011416.1_4362011_4364114_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP011416.1_4364126_4364765_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP011416.1_4364828_4365497_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP011416.1_4365493_4366279_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP011416.1_4366282_4367095_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP011416.1_4367106_4368711_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP011416.1_4368836_4369142_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP011416.1_4369714_4370971_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP011416.1_4371011_4372385_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP011416.1_4372599_4373241_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP011416.1_4373280_4374429_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP011416.1_4374719_4375931_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP011416.1_4376043_4376976_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP011416.1_4376972_4377998_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP011416.1_4378296_4378386_+	NA	NA|390aa|down_8|NZ_CP011416.1_4378551_4379721_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP011416.1_4379866_4380448_-	PRK10543, PRK10543, superoxide dismutase [Fe]
