assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001006025.1_ASM100602v1	NZ_CP011386	Lactobacillus helveticus strain MB2-1, complete genome	1	372695-372830	1	CRISPRCasFinder	no	cas3	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	Unclear	TATCCCGTCTCATTAGGAATGAAA	24	0	0	NA	NA	NA	2	2	Unclear	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	NA|31aa|up_9|NZ_CP011386.1_365705_365798_-,NA|178aa|up_8|NZ_CP011386.1_366094_366628_+,NA|65aa|up_7|NZ_CP011386.1_367949_368144_+,NA|192aa|up_4|NZ_CP011386.1_370110_370686_-,NA|101aa|up_3|NZ_CP011386.1_370705_371008_-,NA|141aa|up_2|NZ_CP011386.1_371010_371433_-,NA|34aa|up_0|NZ_CP011386.1_372573_372675_-,NA	NA|31aa|up_9|NZ_CP011386.1_365705_365798_-	NA	NA|178aa|up_8|NZ_CP011386.1_366094_366628_+	NA	NA|65aa|up_7|NZ_CP011386.1_367949_368144_+	NA	NA|498aa|up_6|NZ_CP011386.1_368196_369690_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|87aa|up_5|NZ_CP011386.1_369774_370035_-	pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1	NA|192aa|up_4|NZ_CP011386.1_370110_370686_-	NA	NA|101aa|up_3|NZ_CP011386.1_370705_371008_-	NA	NA|141aa|up_2|NZ_CP011386.1_371010_371433_-	NA	NA|73aa|up_1|NZ_CP011386.1_371433_371652_-	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins	NA|34aa|up_0|NZ_CP011386.1_372573_372675_-	NA	NA|384aa|down_0|NZ_CP011386.1_372945_374097_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|95aa|down_1|NZ_CP011386.1_374333_374618_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|NZ_CP011386.1_374671_376294_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|859aa|down_3|NZ_CP011386.1_376475_379052_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|637aa|down_4|NZ_CP011386.1_379051_380962_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|197aa|down_5|NZ_CP011386.1_380962_381553_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|339aa|down_6|NZ_CP011386.1_381601_382618_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|145aa|down_7|NZ_CP011386.1_382667_383102_+	pfam02699, YajC, Preprotein translocase subunit	NA|484aa|down_8|NZ_CP011386.1_383235_384687_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_9|NZ_CP011386.1_384679_385801_+	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa
GCF_001006025.1_ASM100602v1	NZ_CP011386	Lactobacillus helveticus strain MB2-1, complete genome	2	531455-531637	1	PILER-CR	no	cas14k	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	Unclear	CACGCGTGGGTTCAAATCCCACAT	24	0	0	NA	NA	NA	2	2	TypeV	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	NA|149aa|up_3|NZ_CP011386.1_526711_527158_+,NA|224aa|down_7|NZ_CP011386.1_544735_545407_+	NA|459aa|up_9|NZ_CP011386.1_516598_517975_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|451aa|up_8|NZ_CP011386.1_518339_519692_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|321aa|up_7|NZ_CP011386.1_521129_522092_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|393aa|up_6|NZ_CP011386.1_522110_523289_-	PRK08068, PRK08068, transaminase; Reviewed	NA|264aa|up_5|NZ_CP011386.1_523309_524101_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|68aa|up_4|NZ_CP011386.1_526149_526353_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|149aa|up_3|NZ_CP011386.1_526711_527158_+	NA	NA|167aa|up_2|NZ_CP011386.1_528499_529000_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|203aa|up_1|NZ_CP011386.1_529102_529711_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas14k|439aa|up_0|NZ_CP011386.1_529740_531057_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|443aa|down_0|NZ_CP011386.1_534850_536179_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|177aa|down_1|NZ_CP011386.1_536191_536722_-	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|490aa|down_2|NZ_CP011386.1_537012_538482_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|579aa|down_3|NZ_CP011386.1_538435_540172_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|402aa|down_4|NZ_CP011386.1_540317_541523_-	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|361aa|down_5|NZ_CP011386.1_541649_542732_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|541aa|down_6|NZ_CP011386.1_542836_544459_+	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|224aa|down_7|NZ_CP011386.1_544735_545407_+	NA	NA|273aa|down_8|NZ_CP011386.1_546129_546948_-	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|154aa|down_9|NZ_CP011386.1_547089_547551_+	pfam12802, MarR_2, MarR family
GCF_001006025.1_ASM100602v1	NZ_CP011386	Lactobacillus helveticus strain MB2-1, complete genome	3	741665-741768	2	CRISPRCasFinder	no	cas14j	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	Unclear	GTTTAAACTGGCTTGCTTATTTTAGTAATTAATAC	35	0	0	NA	NA	NA	1	1	TypeV	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	NA,NA|76aa|down_1|NZ_CP011386.1_742089_742317_-,NA|73aa|down_2|NZ_CP011386.1_742320_742539_-	NA|130aa|up_9|NZ_CP011386.1_722506_722896_+	pfam13630, SdpI, SdpI/YfhL protein family	NA|241aa|up_8|NZ_CP011386.1_722898_723621_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|486aa|up_7|NZ_CP011386.1_723620_725078_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	cas14j|397aa|up_6|NZ_CP011386.1_725170_726361_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|724aa|up_5|NZ_CP011386.1_726576_728748_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|205aa|up_4|NZ_CP011386.1_728872_729487_+	pfam04892, VanZ, VanZ like family	NA|447aa|up_3|NZ_CP011386.1_729562_730903_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|410aa|up_2|NZ_CP011386.1_734081_735311_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|338aa|up_1|NZ_CP011386.1_735580_736594_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|532aa|up_0|NZ_CP011386.1_739048_740644_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|92aa|down_0|NZ_CP011386.1_741811_742087_-	pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1	NA|76aa|down_1|NZ_CP011386.1_742089_742317_-	NA	NA|73aa|down_2|NZ_CP011386.1_742320_742539_-	NA	NA|69aa|down_3|NZ_CP011386.1_742531_742738_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|234aa|down_4|NZ_CP011386.1_742886_743588_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|386aa|down_5|NZ_CP011386.1_743730_744888_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|451aa|down_6|NZ_CP011386.1_745065_746418_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|200aa|down_7|NZ_CP011386.1_746567_747167_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|363aa|down_8|NZ_CP011386.1_747183_748272_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|281aa|down_9|NZ_CP011386.1_748264_749107_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
GCF_001006025.1_ASM100602v1	NZ_CP011386	Lactobacillus helveticus strain MB2-1, complete genome	4	1524688-1524776	3	CRISPRCasFinder	no		cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	Orphan	GACTATGCCATTGCCGCAGGGATTTTAG	28	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	NA|178aa|up_8|NZ_CP011386.1_1514233_1514767_-,NA|98aa|up_0|NZ_CP011386.1_1524106_1524400_-,NA|180aa|down_1|NZ_CP011386.1_1526666_1527206_-,NA|121aa|down_2|NZ_CP011386.1_1527217_1527580_-,NA|46aa|down_3|NZ_CP011386.1_1527908_1528046_+,NA|78aa|down_5|NZ_CP011386.1_1530130_1530364_+,NA|169aa|down_7|NZ_CP011386.1_1532631_1533138_+,NA|245aa|down_9|NZ_CP011386.1_1534737_1535472_-	NA|582aa|up_9|NZ_CP011386.1_1512164_1513910_-	cd08510, PBP2_Lactococcal_OppA_like, The substrate binding component of an ABC-type lactococcal OppA-like transport system contains	NA|178aa|up_8|NZ_CP011386.1_1514233_1514767_-	NA	NA|116aa|up_7|NZ_CP011386.1_1514806_1515154_-	pfam03217, SLAP, SLAP domain	NA|90aa|up_6|NZ_CP011386.1_1515172_1515442_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|390aa|up_5|NZ_CP011386.1_1515690_1516860_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|389aa|up_4|NZ_CP011386.1_1519112_1520279_-	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|367aa|up_3|NZ_CP011386.1_1520266_1521367_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|210aa|up_2|NZ_CP011386.1_1521768_1522398_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|350aa|up_1|NZ_CP011386.1_1522506_1523556_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|98aa|up_0|NZ_CP011386.1_1524106_1524400_-	NA	NA|109aa|down_0|NZ_CP011386.1_1526052_1526379_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|180aa|down_1|NZ_CP011386.1_1526666_1527206_-	NA	NA|121aa|down_2|NZ_CP011386.1_1527217_1527580_-	NA	NA|46aa|down_3|NZ_CP011386.1_1527908_1528046_+	NA	NA|207aa|down_4|NZ_CP011386.1_1529397_1530018_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|78aa|down_5|NZ_CP011386.1_1530130_1530364_+	NA	NA|484aa|down_6|NZ_CP011386.1_1530998_1532450_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|169aa|down_7|NZ_CP011386.1_1532631_1533138_+	NA	NA|422aa|down_8|NZ_CP011386.1_1533300_1534566_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|245aa|down_9|NZ_CP011386.1_1534737_1535472_-	NA
GCF_001006025.1_ASM100602v1	NZ_CP011386	Lactobacillus helveticus strain MB2-1, complete genome	5	1644308-1647001	4,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	Unclear	CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC	30,30,30,30	3	3	1645223-1645258|1646279-1646314|1646935-1646971	NZ_CP011386.1_930525-930490|NZ_CP011386.1_2079103-2079068|NZ_CP011386.1_826561-826597	NA:NA:NA:NA	40,39,35,35	40	Unclear	cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	NA|177aa|up_7|NZ_CP011386.1_1633722_1634253_-,NA	NA|98aa|up_9|NZ_CP011386.1_1630070_1630364_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|203aa|up_8|NZ_CP011386.1_1632923_1633532_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|177aa|up_7|NZ_CP011386.1_1633722_1634253_-	NA	NA|645aa|up_6|NZ_CP011386.1_1635082_1637017_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|303aa|up_5|NZ_CP011386.1_1637307_1638216_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|444aa|up_4|NZ_CP011386.1_1638247_1639579_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|156aa|up_3|NZ_CP011386.1_1639581_1640049_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|201aa|up_2|NZ_CP011386.1_1640051_1640654_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|277aa|up_1|NZ_CP011386.1_1640650_1641481_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|888aa|up_0|NZ_CP011386.1_1641489_1644153_-	PRK05755, PRK05755, DNA polymerase I; Provisional	cas2|94aa|down_0|NZ_CP011386.1_1647185_1647467_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_1|NZ_CP011386.1_1647472_1648462_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|down_2|NZ_CP011386.1_1648471_1648963_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|810aa|down_3|NZ_CP011386.1_1648978_1651408_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|238aa|down_4|NZ_CP011386.1_1651550_1652264_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|301aa|down_5|NZ_CP011386.1_1652250_1653153_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|586aa|down_6|NZ_CP011386.1_1653171_1654929_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|252aa|down_7|NZ_CP011386.1_1654946_1655702_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|218aa|down_8|NZ_CP011386.1_1658180_1658834_-	PRK07116, PRK07116, flavodoxin; Provisional	NA|294aa|down_9|NZ_CP011386.1_1658978_1659860_-	pfam01145, Band_7, SPFH domain / Band 7 family
