The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	30839	43152	1908294		Synechococcus_phage(28.57%)	8	NA	NA
WP_015055883.1|30839_34565_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.3	1.5e-38
WP_010921773.1|34725_36180_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
WP_010921774.1|36207_37230_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	1.1e-63
WP_010921775.1|37397_37952_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	5.2e-25
WP_011285343.1|38135_39683_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	51.3	8.3e-44
WP_010921776.1|39740_40865_-	SH3 domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
WP_010921777.1|41117_42383_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_002987716.1|42660_43152_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	491473	557008	1908294	integrase,tRNA,holin,portal,terminase,tail,capsid	Temperate_phage(49.15%)	73	499629:499646	526810:526827
WP_029714068.1|491473_492409_+|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	38.5	6.0e-05
WP_002983657.1|492398_493721_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_002983660.1|493758_494499_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_010922538.1|494495_496394_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	B5LWE2	Feldmannia_species_virus	30.7	1.4e-21
WP_011054833.1|496516_497209_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_002991890.1|497205_498210_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010922536.1|498202_498844_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011285657.1|498880_500281_+	Cof-type HAD-IIB family hydrolase	NA	A0A1V0S9I2	Catovirus	42.9	2.7e-25
499629:499646	attL	AAAAAGTTGAAGAAGATG	NA	NA	NA	NA
WP_002991882.1|500280_500658_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010922535.1|500675_501617_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	77.6	3.5e-130
WP_029714065.1|501744_502377_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	54.3	3.2e-63
WP_010922534.1|502432_503758_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	50.6	1.0e-114
WP_002983685.1|503729_504395_+	ComF family protein	NA	NA	NA	NA	NA
WP_002988974.1|504474_505023_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_002983693.1|512713_513247_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_009880741.1|513326_514103_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_011018152.1|514250_515417_-|integrase	tyrosine-type recombinase/integrase	integrase	C5J953	Streptococcus_phage	42.4	2.4e-80
WP_014635616.1|515598_517020_-	DUF4041 domain-containing protein	NA	M1PLF9	Streptococcus_phage	74.1	1.0e-136
WP_023605207.1|517034_517421_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1P8VVK5	Streptococcus_phage	77.6	1.9e-53
WP_011888679.1|517404_517746_-	helix-turn-helix transcriptional regulator	NA	J7KJZ4	Streptococcus_phage	85.8	1.2e-48
WP_014635614.1|517943_518156_+	DNA-binding protein	NA	J7KBP9	Streptococcus_phage	95.7	9.2e-31
WP_011888681.1|518183_518903_+	phage antirepressor KilAC domain-containing protein	NA	M1Q1T4	Streptococcus_phage	70.3	7.4e-88
WP_011284879.1|519000_519240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054585.1|519406_519592_+	helix-turn-helix transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
WP_011888682.1|519662_519914_+	hypothetical protein	NA	A0A1P8VVV6	Streptococcus_phage	97.6	2.6e-40
WP_011017881.1|519944_520082_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
WP_014635613.1|520175_520937_+	replication initiator protein A	NA	A0A097PBE7	Streptococcus_pyogenes_phage	100.0	7.5e-131
WP_011888684.1|520923_521706_+	ATP-binding protein	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	97.3	1.0e-143
WP_011285579.1|521846_522200_+	hypothetical protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	54.0	2.8e-16
WP_011018143.1|522180_522435_+	hypothetical protein	NA	Q938N0	Temperate_phage	98.8	3.7e-42
WP_011018142.1|522456_522939_+	siphovirus Gp157 family protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
WP_046735269.1|522939_523614_+	ERF family protein	NA	Q938M8	Temperate_phage	97.3	1.5e-103
WP_011285575.1|523606_524032_+	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	82.3	2.8e-55
WP_011106686.1|524037_524241_+	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
WP_011285574.1|524240_524681_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
WP_011284873.1|524677_525034_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
WP_002995955.1|525275_525512_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
WP_002995952.1|525508_525679_+	hypothetical protein	NA	Q938M0	Temperate_phage	87.1	7.9e-09
WP_011018134.1|525675_525960_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	87.2	8.9e-37
WP_011888685.1|525961_526594_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
WP_011888686.1|526598_527078_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
526810:526827	attR	AAAAAGTTGAAGAAGATG	NA	NA	NA	NA
WP_002987493.1|527074_527245_+	hypothetical protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
WP_011888687.1|527528_527963_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	94.4	1.7e-71
WP_010922073.1|530105_530582_+	hypothetical protein	NA	Q938L4	Temperate_phage	68.4	4.9e-48
WP_010922074.1|530664_531876_+|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
WP_010922075.1|531889_533392_+|portal	phage portal protein	portal	Q938L2	Temperate_phage	99.6	5.9e-281
WP_029714379.1|533396_534890_+|capsid	phage minor capsid protein	capsid	Q938L1	Temperate_phage	79.6	3.4e-212
WP_010922077.1|534889_535117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011888689.1|535203_535470_+	hypothetical protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
WP_011888690.1|535595_536210_+	hypothetical protein	NA	Q938K8	Temperate_phage	93.1	3.8e-93
WP_010922080.1|536213_537032_+|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
WP_011888692.1|537085_537502_+	hypothetical protein	NA	Q938K7	Temperate_phage	98.2	9.6e-56
WP_011888693.1|537491_537824_+	hypothetical protein	NA	Q79S86	Temperate_phage	99.1	6.2e-58
WP_010922083.1|537823_538180_+	hypothetical protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
WP_011888694.1|538176_538575_+|capsid	phage capsid protein	capsid	Q79S87	Temperate_phage	98.5	6.5e-70
WP_011018120.1|538574_539036_+	hypothetical protein	NA	Q938K6	Temperate_phage	78.8	1.9e-60
WP_011888695.1|539079_539514_+	hypothetical protein	NA	Q938K5	Temperate_phage	97.9	4.2e-70
WP_011888696.1|539517_540099_+	hypothetical protein	NA	Q938K4	Temperate_phage	94.3	1.0e-100
WP_029714384.1|540088_543349_+	tape measure protein	NA	Q938K3	Temperate_phage	99.1	0.0e+00
WP_011888697.1|543345_544062_+|tail	phage tail family protein	tail	Q938K2	Temperate_phage	99.2	1.2e-135
WP_014635605.1|544058_546203_+|tail	phage tail protein	tail	Q938K1	Temperate_phage	95.1	0.0e+00
WP_011017589.1|546199_547210_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	75.8	7.8e-136
WP_014635603.1|547222_549109_+	gp58-like family protein	NA	Q938J9	Temperate_phage	84.6	2.0e-217
WP_002983467.1|549120_549552_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
WP_011888699.1|549554_550187_+	hypothetical protein	NA	Q938J7	Temperate_phage	48.6	3.2e-42
WP_011184730.1|550196_550652_+|holin	phage holin family protein	holin	A0A0M4R3G6	Streptococcus_phage	81.5	2.3e-63
WP_011888700.1|550763_551969_+	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	83.5	1.8e-203
WP_011017840.1|552108_552633_+	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
WP_011888701.1|552620_553487_+	DUF334 domain-containing protein	NA	Q938J2	Temperate_phage	99.7	1.1e-133
WP_011017966.1|553536_553971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011285611.1|554241_555042_-	streptodornase Sda3	NA	NA	NA	NA	NA
WP_011184907.1|555279_555462_+	hypothetical protein	NA	A3F673	Streptococcus_phage	83.3	4.4e-21
WP_010922532.1|555652_557008_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	32.7	1.7e-72
>prophage 3
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	637287	695149	1908294	integrase,tRNA,holin,portal,terminase,tail,protease,capsid	Streptococcus_phage(64.15%)	72	659594:659613	692926:692945
WP_010922491.1|637287_640089_+|tRNA	isoleucine--tRNA ligase	tRNA	H2EEZ0	Moumouvirus	27.0	2.5e-70
WP_010922490.1|640353_640656_-	DUF1827 family protein	NA	NA	NA	NA	NA
WP_002989103.1|640706_641162_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_010922489.1|641289_643572_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A2C9CYX3	Yersinia_phage	39.7	6.3e-125
WP_002983885.1|643869_644100_+	YkuJ family protein	NA	NA	NA	NA	NA
WP_002983887.1|644226_644913_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010922488.1|644912_645647_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.4	8.2e-34
WP_010922487.1|645795_647205_+	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	32.8	1.5e-60
WP_002989112.1|647382_649077_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	42.4	1.6e-128
WP_010922486.1|649284_650139_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.0e-39
WP_002992349.1|650291_651632_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	30.9	8.2e-40
WP_002983901.1|651609_651825_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_003056941.1|651824_652697_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003056952.1|652689_653517_+	TlyA family rRNA (cytidine-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_002983907.1|653503_653974_+	arginine repressor	NA	NA	NA	NA	NA
WP_010922485.1|653995_655657_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_011285633.1|655828_656770_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002983913.1|656985_657837_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	5.4e-13
WP_002992620.1|657829_658672_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_010922482.1|658649_659237_+	YpmS family protein	NA	NA	NA	NA	NA
WP_002983920.1|659335_659611_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
659594:659613	attL	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
WP_003051793.1|659699_660842_-|integrase	site-specific integrase	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
WP_010922481.1|660965_661484_-	restriction endonuclease	NA	E8ZDN5	Streptococcus_phage	45.9	9.2e-32
WP_010922480.1|661495_662251_-	helix-turn-helix transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
WP_010922479.1|662451_662664_+	helix-turn-helix transcriptional regulator	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
WP_010922478.1|662933_663245_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
WP_010922477.1|663246_663432_+	hypothetical protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
WP_011017564.1|663935_664322_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
WP_002985387.1|664302_664536_+	hypothetical protein	NA	Q938N1	Temperate_phage	94.8	6.1e-36
WP_011017992.1|664532_664673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011017565.1|664681_664888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002988359.1|664943_665273_+	hypothetical protein	NA	J7KGX3	Streptococcus_phage	83.5	2.1e-45
WP_011285626.1|665275_666205_+	recombinase RecT	NA	M1NRN6	Streptococcus_phage	72.2	1.1e-91
WP_011285625.1|666201_666999_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	J7KGZ1	Streptococcus_phage	84.5	6.0e-131
WP_011285624.1|667008_667176_+	hypothetical protein	NA	A0A1S5SEF3	Streptococcus_phage	51.9	3.3e-07
WP_020837403.1|667353_667695_+	hypothetical protein	NA	M1NS23	Streptococcus_phage	38.7	1.1e-12
WP_002988366.1|667691_668204_+	hypothetical protein	NA	Q708P9	Streptococcus_phage	78.0	2.3e-67
WP_002988369.1|668287_668557_+	hypothetical protein	NA	A7J287	Streptococcus_phage	71.9	9.6e-25
WP_010922070.1|668558_669194_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
WP_010922470.1|669461_669881_+	DUF1492 domain-containing protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	8.7e-57
WP_010922469.1|669989_670334_+	HNH endonuclease	NA	M1Q0W7	Streptococcus_phage	68.5	5.5e-41
WP_002994106.1|670482_670839_+	hypothetical protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
WP_010922468.1|670835_672104_+|portal	phage portal protein	portal	M1PFL4	Streptococcus_phage	75.6	2.2e-188
WP_010922467.1|672096_673590_+	hypothetical protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
WP_010922466.1|673595_673820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015055972.1|673869_674049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922464.1|674041_674308_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	86.4	7.3e-33
WP_011285619.1|674417_675833_+|terminase	terminase	terminase	A0A0B5A091	Streptococcus_phage	74.2	2.9e-213
WP_010922462.1|675913_676375_+	DUF4355 domain-containing protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
WP_010922461.1|676399_677311_+|capsid	phage major capsid protein	capsid	M1PFL0	Streptococcus_phage	67.3	9.9e-114
WP_010922460.1|677310_677511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922459.1|677520_677943_+	hypothetical protein	NA	A0A0B5A2F6	Streptococcus_phage	70.8	3.7e-47
WP_011285617.1|677902_678241_+	hypothetical protein	NA	M1PFF8	Streptococcus_phage	70.3	2.2e-42
WP_010922457.1|678233_678470_+	hypothetical protein	NA	A0A0B5A7G2	Streptococcus_phage	71.4	2.5e-21
WP_000573598.1|678470_678806_+	hypothetical protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
WP_010922456.1|678817_679411_+|tail	tail protein	tail	M1PKG8	Streptococcus_phage	62.5	3.5e-59
WP_010922455.1|679421_679685_+	hypothetical protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
WP_010922454.1|679699_680071_+	DUF5361 domain-containing protein	NA	M1PL84	Streptococcus_phage	62.4	2.9e-35
WP_010922453.1|680070_682428_+	hypothetical protein	NA	M1NRG5	Streptococcus_phage	50.6	6.5e-141
WP_010922452.1|682424_683120_+	hypothetical protein	NA	A0A1B1P761	Bacillus_phage	29.6	7.6e-05
WP_010922451.1|683116_685075_+|tail	phage tail protein	tail	M1PKG3	Streptococcus_phage	49.2	5.3e-96
WP_023079488.1|685074_686076_+	hyaluronidase HylP	NA	Q938K0	Temperate_phage	71.6	2.3e-127
WP_010922449.1|686090_687875_+	hypothetical protein	NA	Q938J9	Temperate_phage	47.5	6.3e-96
WP_010922448.1|687886_688318_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	97.9	3.8e-71
WP_010922447.1|688320_688938_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	88.8	1.0e-77
WP_002987582.1|688947_689223_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
WP_003058873.1|689219_689447_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
WP_010922446.1|689562_690768_+	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	84.3	5.9e-207
WP_011017966.1|690837_691272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011285611.1|691544_692345_-	streptodornase Sda3	NA	NA	NA	NA	NA
WP_029714291.1|692573_692756_+	hypothetical protein	NA	A3F673	Streptococcus_phage	80.0	1.7e-20
WP_029714293.1|693286_695149_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.7	4.6e-89
692926:692945	attR	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
>prophage 4
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	813249	861364	1908294	integrase,holin,portal,terminase,tail,capsid	Streptococcus_pyogenes_phage(70.18%)	63	816616:816675	854948:855043
WP_010922381.1|813249_815514_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
WP_002989605.1|815770_816391_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
816616:816675	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
WP_011054595.1|816753_817842_-|integrase	site-specific integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.2	4.7e-203
WP_011285585.1|817962_818856_-	hypothetical protein	NA	A0A1I9LJQ0	Stx_converting_phage	47.5	1.2e-68
WP_011285584.1|818891_819716_-	helix-turn-helix transcriptional regulator	NA	A0A097PBE5	Streptococcus_pyogenes_phage	91.6	1.2e-131
WP_011285583.1|820072_820231_+	hypothetical protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
WP_011284882.1|820260_820860_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
WP_011284881.1|820913_821123_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
WP_011054589.1|821111_821498_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
WP_002992770.1|821571_821772_+	helix-turn-helix transcriptional regulator	NA	A0A141E205	Streptococcus_phage	59.6	2.7e-08
WP_011017885.1|821881_822091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017884.1|822221_822731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029714276.1|822785_823049_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	98.9	3.6e-40
WP_011054584.1|823085_823382_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	100.0	2.1e-49
WP_023610888.1|823528_823843_+	helix-turn-helix transcriptional regulator	NA	A0A1P8VVN6	Streptococcus_phage	95.2	2.7e-50
WP_009881060.1|823856_824687_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A1S5S918	Streptococcus_phage	54.7	6.4e-67
WP_011285581.1|824673_825456_+	ATP-binding protein	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	96.9	3.9e-143
WP_011285579.1|825596_825950_+	hypothetical protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	54.0	2.8e-16
WP_011018143.1|825930_826185_+	hypothetical protein	NA	Q938N0	Temperate_phage	98.8	3.7e-42
WP_011018142.1|826206_826689_+	siphovirus Gp157 family protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
WP_029714396.1|826689_827364_+	ERF family protein	NA	Q938M8	Temperate_phage	97.8	3.1e-104
WP_011285575.1|827356_827782_+	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	82.3	2.8e-55
WP_011106686.1|827787_827991_+	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
WP_011285574.1|827990_828431_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
WP_011284873.1|828427_828784_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
WP_011018133.1|829132_829765_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
WP_011285572.1|829767_830292_+	DUF1642 domain-containing protein	NA	J7KK91	Streptococcus_phage	51.1	2.3e-38
WP_011018131.1|830288_830555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054810.1|830840_831275_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	94.4	2.2e-71
WP_011285571.1|831884_832265_+	hypothetical protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
WP_009880266.1|832254_833529_+|terminase	PBSX family phage terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
WP_029714009.1|833528_834854_+|portal	phage portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	97.2	2.1e-237
WP_011285569.1|834822_835731_+|capsid	minor capsid protein	capsid	A0A097PBF2	Streptococcus_pyogenes_phage	98.2	6.7e-86
WP_011285568.1|835737_836007_+	hypothetical protein	NA	Q938K9	Temperate_phage	85.2	5.6e-33
WP_009880262.1|836251_836821_+	DUF4355 domain-containing protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	98.4	8.5e-71
WP_009880261.1|836839_837730_+	hypothetical protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
WP_009880260.1|837742_838036_+	Rho termination factor N-terminal domain-containing protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
WP_029714010.1|838049_838388_+	hypothetical protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	98.2	5.2e-52
WP_011285567.1|838384_838696_+	hypothetical protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	98.1	1.0e-49
WP_009880257.1|838692_839088_+	hypothetical protein	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.8e-59
WP_009880256.1|839089_839500_+	DUF5072 family protein	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
WP_009880255.1|839511_840018_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
WP_009880254.1|840030_840348_+	hypothetical protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
WP_009880253.1|840320_840779_+	hypothetical protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	100.0	2.3e-82
WP_011054802.1|840771_842577_+|tail	tail protein	tail	A0A097PAU2	Streptococcus_pyogenes_phage	99.7	8.8e-263
WP_009880250.1|842577_844062_+|tail	phage tail family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
WP_011285566.1|844062_847503_+|tail	phage tail protein	tail	A0A097PBF5	Streptococcus_pyogenes_phage	98.7	0.0e+00
WP_015055954.1|847507_849370_+	hypothetical protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.4	0.0e+00
WP_011285564.1|849380_849728_+	DUF1366 domain-containing protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	99.1	6.5e-58
WP_015055952.1|849877_850201_+	hypothetical protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
WP_011285562.1|850200_850533_+|holin	phage holin	holin	A0A097PBF6	Streptococcus_pyogenes_phage	99.1	7.4e-51
WP_011285561.1|850534_851299_+	CHAP domain-containing protein	NA	A0A097PAT3	Streptococcus_pyogenes_phage	98.4	8.0e-149
WP_011054796.1|851310_851913_+	hypothetical protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
WP_011054795.1|851923_852697_+	hypothetical protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
WP_009880241.1|852706_852928_+	hypothetical protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
WP_009880240.1|852927_853587_+	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
WP_009880239.1|853708_854464_-	streptococcal pyrogenic exotoxin SpeA	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
WP_011285559.1|854684_854873_+	hypothetical protein	NA	J7KIW4	Streptococcus_phage	82.3	3.4e-21
WP_011285558.1|855463_856078_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	1.1e-50
854948:855043	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
WP_010922378.1|856204_856990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002984437.1|856999_857698_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
WP_010922377.1|857697_858069_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010922376.1|858253_861364_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.9	3.7e-120
>prophage 5
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	1038039	1117614	1908294	transposase,integrase,tRNA,holin,portal,terminase,tail,protease,capsid	Streptococcus_phage(87.76%)	91	1058971:1058990	1103735:1103754
WP_010922268.1|1038039_1039416_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_010922267.1|1039483_1040893_-	dipeptidase PepV	NA	NA	NA	NA	NA
WP_002989923.1|1041017_1041620_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_010922266.1|1041804_1043601_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010922265.1|1043702_1045100_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011285513.1|1045194_1045884_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_010922263.1|1045899_1046466_-	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_015055942.1|1047244_1048291_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010922260.1|1048284_1049073_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011285511.1|1049076_1050726_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	33.3	8.0e-13
WP_002989931.1|1050861_1051689_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_002984844.1|1051685_1052495_-	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_002984845.1|1052511_1053003_-	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_002989935.1|1053021_1053447_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010922256.1|1053653_1054673_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_010922255.1|1054787_1055225_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_029714016.1|1055410_1056229_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_010922253.1|1056486_1058319_-	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	41.0	2.2e-19
1058971:1058990	attL	ACCATTCAAAACAGCATAGC	NA	NA	NA	NA
WP_029714017.1|1059072_1059255_-	hypothetical protein	NA	A3F673	Streptococcus_phage	71.7	1.0e-17
WP_011054450.1|1059453_1059663_-	helix-turn-helix transcriptional regulator	NA	A3F668	Streptococcus_phage	100.0	1.2e-30
WP_011054448.1|1060103_1060355_+	hypothetical protein	NA	A3F666	Streptococcus_phage	96.4	2.8e-42
WP_011054447.1|1060618_1060858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054446.1|1060915_1061272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029714018.1|1061387_1062593_-	glucosaminidase domain-containing protein	NA	A7J2B5	Streptococcus_phage	82.0	5.0e-198
WP_029714020.1|1062715_1062943_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	97.3	2.2e-30
WP_011017397.1|1062939_1063212_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
WP_046735270.1|1063223_1063862_-	hypothetical protein	NA	A3F662	Streptococcus_phage	52.7	2.0e-44
WP_002988448.1|1063864_1064293_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
WP_011017395.1|1064304_1066209_-	gp58-like family protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
WP_011017394.1|1066218_1067226_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
WP_029713950.1|1067222_1069274_-|tail	phage tail protein	tail	A3F656	Streptococcus_phage	85.2	0.0e+00
WP_029713951.1|1069270_1070041_-|tail	phage tail family protein	tail	A3F655	Streptococcus_phage	87.9	1.4e-129
WP_029713952.1|1070053_1074154_-|tail	phage tail tape measure protein	tail	A3F654	Streptococcus_phage	76.5	0.0e+00
WP_029713954.1|1074378_1074681_-	hypothetical protein	NA	A3F652	Streptococcus_phage	96.0	2.4e-48
WP_029713955.1|1074776_1075361_-|tail	tail protein	tail	A3F651	Streptococcus_phage	90.2	6.2e-93
WP_029713956.1|1075372_1075753_-	hypothetical protein	NA	A3F650	Streptococcus_phage	97.6	8.2e-62
WP_011017387.1|1075745_1076144_-	HK97 gp10 family phage protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
WP_029713957.1|1076145_1076508_-	hypothetical protein	NA	A3F648	Streptococcus_phage	95.8	1.6e-59
WP_029713958.1|1076500_1076809_-	hypothetical protein	NA	A3F647	Streptococcus_phage	92.2	1.4e-43
WP_164875336.1|1076808_1076982_-	hypothetical protein	NA	A3F646	Streptococcus_phage	91.2	1.9e-21
WP_029713959.1|1076992_1078126_-|capsid	phage major capsid protein	capsid	A3F645	Streptococcus_phage	96.0	1.3e-200
WP_029713960.1|1078142_1078949_-|protease	Clp protease ClpP	protease	A3F644	Streptococcus_phage	97.8	3.9e-146
WP_027970293.1|1078929_1080117_-|portal	phage portal protein	portal	A3F643	Streptococcus_phage	97.5	2.1e-220
WP_029713961.1|1080297_1082028_-|terminase	terminase large subunit	terminase	A3F641	Streptococcus_phage	97.4	0.0e+00
WP_029713962.1|1082040_1082358_-|terminase	P27 family phage terminase small subunit	terminase	A3F640	Streptococcus_phage	99.0	1.3e-49
WP_029713963.1|1082500_1082806_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	97.0	5.0e-54
WP_029713964.1|1082798_1083185_-	hypothetical protein	NA	A3F638	Streptococcus_phage	93.0	3.6e-65
WP_029713966.1|1083426_1083672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029713967.1|1083695_1083992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029713968.1|1084146_1084722_-|integrase	site-specific integrase	integrase	A3F636	Streptococcus_phage	94.8	2.7e-101
WP_027970299.1|1084879_1085281_-	hypothetical protein	NA	A3F635	Streptococcus_phage	93.2	3.4e-66
WP_029713969.1|1085283_1085628_-	helix-turn-helix transcriptional regulator	NA	A3F633	Streptococcus_phage	95.0	1.4e-49
WP_029713970.1|1085624_1085903_-	hypothetical protein	NA	A3F632	Streptococcus_phage	96.7	9.6e-44
WP_029713971.1|1085916_1086309_-	single-stranded DNA-binding protein	NA	A0A1P8VVS8	Streptococcus_phage	71.7	5.3e-48
WP_003057301.1|1086305_1086527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029713972.1|1086519_1086852_-	hypothetical protein	NA	A0A1S5SCX1	Streptococcus_phage	54.6	5.9e-32
WP_029713973.1|1086844_1087084_-	DUF3310 domain-containing protein	NA	A3F631	Streptococcus_phage	94.8	2.6e-37
WP_080033899.1|1087206_1087500_-	DUF1372 family protein	NA	A0A1X9I624	Streptococcus_phage	50.5	1.1e-21
WP_093974717.1|1087508_1088000_-	hypothetical protein	NA	A0A1P8VVP1	Streptococcus_phage	79.8	1.2e-70
WP_153276856.1|1087986_1088151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029713977.1|1088161_1088392_-	hypothetical protein	NA	C5J991	Streptococcus_phage	52.8	1.0e-14
WP_029713978.1|1088391_1089213_-	ATP-binding protein	NA	A0A1P8VVV9	Streptococcus_phage	94.9	1.2e-147
WP_029713979.1|1089213_1089960_-	conserved phage C-terminal domain-containing protein	NA	A0A1P8VVR3	Streptococcus_phage	97.2	3.7e-135
WP_029713980.1|1089946_1091293_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	84.0	2.3e-207
WP_029713981.1|1091279_1091468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022554795.1|1091622_1091880_-	hypothetical protein	NA	A3F618	Streptococcus_phage	95.3	7.0e-41
WP_029713982.1|1092136_1092343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029713983.1|1092339_1092552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029713984.1|1092626_1093346_-	ORF6C domain-containing protein	NA	A3F617	Streptococcus_phage	79.5	1.6e-106
WP_029713985.1|1093388_1093616_-	hypothetical protein	NA	A0A141E1R7	Streptococcus_phage	57.3	1.2e-12
WP_029713986.1|1093854_1094436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022554802.1|1094610_1094757_-	hypothetical protein	NA	A0A1S5S7K5	Streptococcus_phage	60.4	2.1e-05
WP_029713987.1|1094915_1095671_+	helix-turn-helix transcriptional regulator	NA	M1NS52	Streptococcus_phage	64.4	4.3e-78
WP_029713988.1|1096066_1097263_+|integrase	tyrosine-type recombinase/integrase	integrase	A3F610	Streptococcus_phage	96.7	1.5e-223
WP_010922252.1|1097470_1098133_-	type II-A CRISPR-associated protein Csn2	NA	NA	NA	NA	NA
WP_002989951.1|1098122_1098464_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_002989953.1|1098460_1099330_-	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_011285506.1|1099329_1103436_-	type II CRISPR RNA-guided endonuclease Cas9	NA	NA	NA	NA	NA
WP_010922250.1|1103915_1104548_-	TIGR01906 family membrane protein	NA	NA	NA	NA	NA
1103735:1103754	attR	ACCATTCAAAACAGCATAGC	NA	NA	NA	NA
WP_010922249.1|1104547_1105312_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
WP_011285504.1|1105311_1106064_-	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA	NA
WP_010922247.1|1106073_1107204_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_010922246.1|1107266_1107908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010922245.1|1108041_1109397_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_002984857.1|1109450_1110407_-	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
WP_010922244.1|1110403_1111255_-	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_011285501.1|1111361_1112705_+	Mur ligase family protein	NA	NA	NA	NA	NA
WP_010922242.1|1112704_1113496_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_002992006.1|1113604_1114594_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	25.2	8.2e-13
WP_010922241.1|1114826_1117244_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_111705325.1|1117470_1117614_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	1242134	1252737	1908294		Streptococcus_phage(57.14%)	9	NA	NA
WP_011285480.1|1242134_1243277_-	cysteine desulfurase	NA	H7BUW1	unidentified_phage	31.7	7.8e-15
WP_010922142.1|1243511_1243952_+	membrane protein	NA	NA	NA	NA	NA
WP_002990257.1|1243981_1245250_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_010922141.1|1245337_1246690_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
WP_010922140.1|1246910_1247252_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
WP_010922139.1|1247312_1248479_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.4	1.8e-38
WP_002985140.1|1248572_1249259_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
WP_002985142.1|1249255_1250419_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
WP_029713995.1|1250526_1252737_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.9	6.5e-268
>prophage 7
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	1312659	1400961	1908294	head,tRNA,portal,terminase,tail,protease,capsid	Streptococcus_phage(59.68%)	93	NA	NA
WP_002985272.1|1312659_1313331_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_029713999.1|1313305_1314664_-	YcaO-like family protein	NA	NA	NA	NA	NA
WP_010922109.1|1314683_1315742_-	streptolysin associated protein SagC	NA	NA	NA	NA	NA
WP_010922108.1|1315738_1316689_-	streptolysin S biosynthesis dehydrogenase SagB	NA	NA	NA	NA	NA
WP_002985285.1|1316910_1317072_-	TOMM family cytolysin streptolysin S	NA	NA	NA	NA	NA
WP_029714000.1|1317936_1324116_-	DUF1542 domain-containing protein	NA	NA	NA	NA	NA
WP_002985288.1|1327905_1329213_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
WP_002990451.1|1329439_1329898_+	YueI family protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
WP_029714002.1|1330029_1331754_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_010922104.1|1332121_1334074_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	46.3	1.5e-143
WP_011285465.1|1334074_1334644_-	hydrolase	NA	NA	NA	NA	NA
WP_002985298.1|1335646_1335994_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_011285464.1|1336108_1337371_-	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.5	8.4e-95
WP_010922101.1|1337363_1337648_-	chorismate mutase	NA	NA	NA	NA	NA
WP_002985303.1|1337823_1338273_-	flavodoxin	NA	NA	NA	NA	NA
WP_010922100.1|1338666_1339608_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_002985307.1|1339722_1339983_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_011285463.1|1340079_1341279_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_010922098.1|1341297_1342020_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029714003.1|1342167_1343715_-	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
WP_029714004.1|1343866_1345285_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_029714005.1|1345562_1345802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002986905.1|1345841_1346315_+	hypothetical protein	NA	A3F671	Streptococcus_phage	92.3	1.6e-78
WP_002986907.1|1346316_1346673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011017840.1|1347595_1348120_-	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
WP_046735271.1|1348259_1349462_-	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	94.8	2.7e-228
WP_011184796.1|1349574_1349760_-	hypothetical protein	NA	Q938J5	Temperate_phage	98.4	6.6e-25
WP_011018110.1|1349756_1350056_-	hypothetical protein	NA	Q938J6	Temperate_phage	93.8	1.9e-42
WP_029714007.1|1350066_1350684_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	87.8	1.0e-77
WP_011018112.1|1350686_1351115_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	78.6	1.9e-54
WP_046735272.1|1351126_1353013_-	gp58-like family protein	NA	Q938J9	Temperate_phage	82.6	2.6e-209
WP_029714406.1|1353025_1354045_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	95.8	8.3e-178
WP_046735273.1|1354041_1356186_-|tail	phage tail protein	tail	Q938K1	Temperate_phage	98.3	0.0e+00
WP_014411854.1|1356182_1356890_-|tail	phage tail family protein	tail	Q938K2	Temperate_phage	71.1	1.7e-92
WP_029714351.1|1356889_1360813_-|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	48.8	1.0e-239
WP_014411856.1|1360825_1360993_-	hypothetical protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
WP_014411857.1|1361022_1361349_-	hypothetical protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
WP_014411858.1|1361401_1362010_-|tail	phage major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
WP_002985347.1|1362026_1362452_-	hypothetical protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
WP_021340627.1|1362448_1362826_-	HK97 gp10 family phage protein	NA	J7KDM3	Streptococcus_phage	73.6	1.8e-45
WP_029714354.1|1362822_1363170_-|head	phage head closure protein	head	J7KJ42	Streptococcus_phage	84.5	2.1e-48
WP_021341088.1|1363166_1363469_-|head,tail	phage head-tail connector protein	head,tail	J7KC36	Streptococcus_phage	87.8	2.6e-42
WP_029714355.1|1363613_1364798_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	76.3	2.3e-163
WP_029714356.1|1364821_1365487_-|protease	Clp protease ClpP	protease	M1Q115	Streptococcus_phage	77.7	6.0e-92
WP_011017578.1|1365464_1366685_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
WP_002985363.1|1366718_1366943_-	hypothetical protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
WP_002985365.1|1366935_1367106_-	hypothetical protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
WP_029714357.1|1367102_1368857_-|terminase	terminase large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
WP_002985368.1|1368860_1369091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002985371.1|1369093_1369561_-|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
WP_029714359.1|1369728_1370070_-	HNH endonuclease	NA	J7KH36	Streptococcus_phage	89.8	9.6e-54
WP_001132273.1|1370305_1370491_+	type II toxin-antitoxin system HicA family toxin	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
WP_002987543.1|1370542_1370920_+	type II toxin-antitoxin system HicB family antitoxin	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
WP_029714361.1|1371045_1371957_-	DNA adenine methylase	NA	A0A126HDT5	Lactococcus_phage	64.5	4.3e-101
WP_011017866.1|1372511_1372952_-	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	100.0	5.0e-79
WP_046735274.1|1373224_1373860_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	66.5	2.0e-84
WP_029714363.1|1374257_1374461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164875335.1|1374479_1374638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029714365.1|1374640_1374868_-	hypothetical protein	NA	A0A1S5S8R7	Streptococcus_phage	47.8	6.2e-09
WP_029714366.1|1374871_1375156_-	hypothetical protein	NA	A3F628	Streptococcus_phage	90.4	3.6e-38
WP_020837669.1|1375152_1375566_-	hypothetical protein	NA	Q938M1	Temperate_phage	65.2	4.9e-36
WP_002990061.1|1375562_1375757_-	hypothetical protein	NA	A3F626	Streptococcus_phage	86.5	9.7e-11
WP_029714370.1|1375743_1376256_-	hypothetical protein	NA	Q708P9	Streptococcus_phage	74.4	3.4e-63
WP_020837403.1|1376252_1376594_-	hypothetical protein	NA	M1NS23	Streptococcus_phage	38.7	1.1e-12
WP_020837672.1|1376770_1377568_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	J7KGZ1	Streptococcus_phage	82.3	3.4e-126
WP_010922473.1|1377560_1377761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010922474.1|1377757_1378747_-	recombinase RecT	NA	A0A286QMX3	Streptococcus_phage	44.2	5.8e-59
WP_010922475.1|1378746_1379079_-	hypothetical protein	NA	J7KGX3	Streptococcus_phage	78.7	2.2e-42
WP_002988357.1|1379134_1379341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988354.1|1379349_1379490_-	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
WP_010922205.1|1379486_1379720_-	hypothetical protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
WP_002990076.1|1379700_1380087_-	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	47.3	1.1e-24
WP_002985392.1|1380569_1380755_-	hypothetical protein	NA	Q938N3	Temperate_phage	83.6	2.0e-21
WP_002985395.1|1380756_1380894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011889039.1|1380980_1381163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029714046.1|1381303_1382065_-	phage antirepressor KilAC domain-containing protein	NA	A0A0C5AEJ9	Bacteriophage	61.5	3.6e-85
WP_002985407.1|1382113_1382302_-	helix-turn-helix transcriptional regulator	NA	A0A0B5A7F0	Streptococcus_phage	63.3	2.6e-13
WP_001008979.1|1382353_1382995_+	hypothetical protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
WP_002985414.1|1383093_1383252_-	hypothetical protein	NA	J7KH24	Streptococcus_phage	88.5	7.1e-20
WP_002985417.1|1383611_1384376_+	helix-turn-helix transcriptional regulator	NA	E8ZDN4	Streptococcus_phage	64.5	2.0e-83
WP_002985420.1|1384385_1384691_+	membrane protein	NA	NA	NA	NA	NA
WP_029714044.1|1384814_1386230_+	recombinase family protein	NA	A5GZ62	Lactococcus_phage	47.2	7.9e-110
WP_002985428.1|1386406_1387318_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	1.3e-105
WP_002985431.1|1387314_1388292_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	74.2	2.1e-138
WP_002985434.1|1388288_1389179_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
WP_002985437.1|1389592_1390939_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
WP_002985439.1|1390959_1392153_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010922051.1|1392487_1394989_-	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	48.1	1.3e-203
WP_010922050.1|1396028_1396727_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	62.4	1.1e-77
WP_002990498.1|1397036_1397966_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002985455.1|1397958_1398651_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	35.6	1.0e-30
WP_101485534.1|1398669_1399768_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_015055933.1|1399836_1400961_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
>prophage 8
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	1464033	1470684	1908294	portal	Streptococcus_phage(66.67%)	12	NA	NA
WP_029714029.1|1464033_1464858_-	asparagine ligase	NA	M1PB22	Moumouvirus	33.1	8.1e-22
WP_011285437.1|1464881_1465220_-	Fic family protein	NA	NA	NA	NA	NA
WP_011285436.1|1465636_1465951_-	hypothetical protein	NA	Q6DMT0	Streptococcus_phage	64.5	4.9e-20
WP_010922006.1|1466016_1466469_-|portal	phage portal protein	portal	E4ZFM3	Streptococcus_phage	84.9	4.4e-62
WP_010922005.1|1466573_1466846_-	hypothetical protein	NA	E4ZFM1	Streptococcus_phage	48.1	1.2e-06
WP_011285435.1|1466864_1467170_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002991611.1|1467169_1467472_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_015055928.1|1467526_1467703_-	prophage LambdaSa04	NA	M1PSF2	Streptococcus_phage	86.2	3.2e-21
WP_160338849.1|1467718_1468612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922001.1|1468611_1468836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010921999.1|1469639_1470485_+	DUF2326 domain-containing protein	NA	NA	NA	NA	NA
WP_002985621.1|1470474_1470684_+	helix-turn-helix domain-containing protein	NA	A0A2K5B263	Erysipelothrix_phage	61.5	1.3e-16
>prophage 9
NZ_CP007537	Streptococcus pyogenes strain AP1 chromosome, complete genome	1908294	1572999	1579033	1908294		Streptococcus_phage(100.0%)	9	NA	NA
WP_010921936.1|1572999_1573827_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.1	1.4e-127
WP_011284536.1|1573900_1574257_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
WP_010921934.1|1574555_1575185_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_002985833.1|1575231_1575624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029714023.1|1575650_1576514_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	6.5e-115
WP_002985838.1|1576518_1576842_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
WP_010921932.1|1577246_1577486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010921931.1|1577504_1578380_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.8	7.7e-63
WP_010921930.1|1578397_1579033_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
