assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000988465.1_ASM98846v1	NZ_CP011324	Escherichia coli strain SQ2203 chromosome, complete genome	1	404762-404906	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|28aa|up_2|NZ_CP011324.1_402632_402716_+,NA	NA|372aa|up_9|NZ_CP011324.1_397388_398504_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP011324.1_398520_399330_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP011324.1_399449_399908_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP011324.1_400090_400615_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP011324.1_400664_400856_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP011324.1_401113_401791_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP011324.1_401862_402147_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP011324.1_402632_402716_+	NA	NA|304aa|up_1|NZ_CP011324.1_402793_403705_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP011324.1_403829_404738_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP011324.1_404982_406167_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP011324.1_406292_409439_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP011324.1_409435_410638_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP011324.1_410827_411517_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP011324.1_411574_412870_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP011324.1_413276_414596_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP011324.1_414671_416045_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP011324.1_416200_418018_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP011324.1_418022_418604_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP011324.1_418696_419767_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_000988465.1_ASM98846v1	NZ_CP011324	Escherichia coli strain SQ2203 chromosome, complete genome	2	545052-545148	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP011324.1_532832_534194_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP011324.1_534250_535552_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP011324.1_535573_536719_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP011324.1_536946_537732_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP011324.1_537742_538978_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP011324.1_538999_540049_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP011324.1_540365_542033_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP011324.1_542042_543302_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP011324.1_543312_544128_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP011324.1_544124_545018_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP011324.1_545212_546280_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP011324.1_546276_546786_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP011324.1_546903_547626_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP011324.1_547628_548123_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP011324.1_548296_549682_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP011324.1_549717_550239_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP011324.1_550346_550559_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP011324.1_550560_551427_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP011324.1_551897_552440_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP011324.1_552659_553352_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_000988465.1_ASM98846v1	NZ_CP011324	Escherichia coli strain SQ2203 chromosome, complete genome	3	2338903-2339029	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|441aa|up_9|NZ_CP011324.1_2316457_2317780_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|395aa|up_8|NZ_CP011324.1_2317810_2318995_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_7|NZ_CP011324.1_2319068_2319845_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_6|NZ_CP011324.1_2319849_2321499_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|208aa|up_5|NZ_CP011324.1_2326037_2326661_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP011324.1_2326657_2328346_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP011324.1_2328494_2331122_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP011324.1_2331268_2331991_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP011324.1_2332118_2335871_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP011324.1_2336566_2338852_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP011324.1_2339085_2340216_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP011324.1_2340215_2340470_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP011324.1_2340523_2341174_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP011324.1_2341636_2342713_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP011324.1_2342717_2344076_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP011324.1_2344348_2345977_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP011324.1_2345966_2347226_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP011324.1_2347222_2348413_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP011324.1_2348605_2349505_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP011324.1_2349517_2349703_+	PRK09956, PRK09956, ISNCY family transposase
GCF_000988465.1_ASM98846v1	NZ_CP011324	Escherichia coli strain SQ2203 chromosome, complete genome	4	2863795-2864557	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,9	12	TypeI-E	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP011324.1_2855606_2856368_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP011324.1_2856348_2857398_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP011324.1_2857394_2857874_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP011324.1_2857873_2858584_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP011324.1_2858602_2858914_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP011324.1_2859107_2859431_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP011324.1_2859480_2860086_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP011324.1_2860085_2861513_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP011324.1_2861514_2862423_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP011324.1_2862674_2863712_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP011324.1_2864662_2864947_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP011324.1_2864948_2865866_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP011324.1_2865881_2866481_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP011324.1_2866467_2867142_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP011324.1_2867144_2868236_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP011324.1_2868248_2868731_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP011324.1_2868723_2870232_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP011324.1_2870646_2873313_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP011324.1_2873671_2874406_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP011324.1_2874480_2876193_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000988465.1_ASM98846v1	NZ_CP011324	Escherichia coli strain SQ2203 chromosome, complete genome	5	2890108-2890501	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCGCTGGCGCGGGGAAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	26,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP011324.1_2891650_2891791_+	NA|424aa|up_9|NZ_CP011324.1_2878750_2880022_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP011324.1_2880012_2880273_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP011324.1_2880289_2880865_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NZ_CP011324.1_2881012_2881906_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP011324.1_2881869_2882649_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP011324.1_2882626_2884036_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP011324.1_2884057_2885512_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP011324.1_2885581_2886367_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP011324.1_2886685_2887963_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP011324.1_2887989_2889468_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP011324.1_2890840_2891512_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP011324.1_2891650_2891791_+	NA	NA|291aa|down_2|NZ_CP011324.1_2891804_2892677_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP011324.1_2892736_2894035_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP011324.1_2894122_2895760_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP011324.1_2895987_2896779_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP011324.1_2896849_2897185_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP011324.1_2897184_2897433_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP011324.1_2897510_2899745_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP011324.1_2899792_2901094_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
