The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011295	Rhodococcus erythropolis strain BG43 chromosome, complete genome	6334075	2429870	2436173	6334075		Lactobacillus_phage(16.67%)	7	NA	NA
WP_019747884.1|2429870_2430437_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.9	7.3e-06
WP_046378370.1|2430509_2431337_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_019747886.1|2431628_2431859_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	64.0	1.5e-21
WP_019747887.1|2431941_2432421_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A217ER62	Bacillus_phage	30.9	1.2e-09
WP_092763870.1|2432402_2434562_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.2	4.0e-206
WP_003944744.1|2434638_2435604_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N7CCA3	Skermania_phage	86.8	7.7e-157
WP_046378371.1|2435699_2436173_-	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	31.2	3.9e-13
>prophage 2
NZ_CP011295	Rhodococcus erythropolis strain BG43 chromosome, complete genome	6334075	5009813	5033896	6334075	portal,integrase	Mycobacterium_phage(26.32%)	29	5016336:5016350	5035111:5035125
WP_155404286.1|5009813_5011247_+|portal	phage portal protein	portal	A0A1C9EHZ9	Gordonia_phage	37.8	4.4e-76
WP_052740970.1|5011230_5012226_+	hypothetical protein	NA	D7NW51	Streptomyces_phage	33.3	4.4e-06
WP_155404287.1|5012300_5013002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046379158.1|5013048_5013954_+	hypothetical protein	NA	A0A1C9EHV7	Gordonia_phage	49.8	1.8e-75
WP_052740972.1|5013994_5014315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052740973.1|5014380_5014776_+	hypothetical protein	NA	A0A1D8EVV1	Mycobacterium_phage	41.0	1.3e-17
WP_046379159.1|5014777_5015131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046379160.1|5015127_5015517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046379161.1|5015509_5015764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046379162.1|5015753_5016164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046379163.1|5016218_5016821_+	hypothetical protein	NA	A0A2H4JC28	uncultured_Caudovirales_phage	81.8	3.3e-89
5016336:5016350	attL	CTCTTCCTCGATCAC	NA	NA	NA	NA
WP_046379164.1|5016883_5017207_+	hypothetical protein	NA	A0A2P1CII4	Microbacterium_phage	61.4	7.5e-08
WP_046379165.1|5017331_5017703_+	hypothetical protein	NA	A0A2H4JC67	uncultured_Caudovirales_phage	50.9	4.0e-21
WP_046379166.1|5017654_5018110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046379167.1|5018135_5022878_+	tape measure protein	NA	A0A2H4JDP5	uncultured_Caudovirales_phage	43.6	2.6e-221
WP_155404288.1|5022903_5023713_+	hypothetical protein	NA	A0A220NQR1	Corynebacterium_phage	22.0	2.1e-06
WP_046379169.1|5023717_5025298_+	hypothetical protein	NA	G9FH45	Rhodococcus_phage	45.6	6.1e-119
WP_046379170.1|5025310_5025949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046379171.1|5025945_5027013_+	N-acetylmuramoyl-L-alanine amidase	NA	Q856D3	Mycobacterium_phage	48.3	6.4e-88
WP_046379172.1|5027012_5027252_+	hypothetical protein	NA	A0A076G7Z4	Mycobacterium_phage	68.4	2.3e-22
WP_046379173.1|5027251_5027815_+	hypothetical protein	NA	A0A142KA10	Gordonia_phage	43.9	5.0e-15
WP_046379174.1|5027842_5028253_+	hypothetical protein	NA	G9FHA1	Rhodococcus_phage	62.0	7.5e-37
WP_046379175.1|5028234_5028579_+	hypothetical protein	NA	G9FHA2	Rhodococcus_phage	50.4	5.4e-20
WP_052740974.1|5028582_5029170_+	hypothetical protein	NA	G9FHA3	Rhodococcus_phage	59.3	6.1e-56
WP_052740975.1|5029174_5030608_+	hypothetical protein	NA	A0A142K8S0	Gordonia_phage	41.5	1.9e-10
WP_046379176.1|5030611_5031136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155404289.1|5031274_5031715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155404311.1|5031777_5032410_-|integrase	tyrosine-type recombinase/integrase	integrase	W8EHC2	Mycobacterium_phage	66.7	6.5e-72
WP_046379178.1|5033044_5033896_-	alpha/beta fold hydrolase	NA	A0A291AV30	Mycobacterium_phage	30.6	1.3e-06
5035111:5035125	attR	CTCTTCCTCGATCAC	NA	NA	NA	NA
>prophage 1
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	0	5142	240129		Mycobacterium_phage(100.0%)	5	NA	NA
WP_046380125.1|816_1335_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_046380126.1|1560_2337_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_155404314.1|2501_3464_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_046380127.1|3562_4093_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_046380128.1|4341_5142_-	alpha/beta fold hydrolase	NA	D3JZC6	Mycobacterium_phage	28.3	6.9e-10
>prophage 2
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	9674	11405	240129		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_046380132.1|9674_11405_+	thiamine pyrophosphate-binding protein	NA	E5EQ70	Micromonas_sp._RCC1109_virus	23.6	2.7e-35
>prophage 3
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	16269	23125	240129	transposase	Acinetobacter_phage(33.33%)	6	NA	NA
WP_155404315.1|16269_17043_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	34.9	1.1e-23
WP_080945779.1|17356_17464_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_155404316.1|17759_18974_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_046380280.1|19941_21318_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.5	2.0e-33
WP_046380138.1|21541_22156_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080945783.1|22201_23125_-	alpha/beta hydrolase	NA	A0A088FQA2	Mycobacterium_phage	33.1	3.6e-10
>prophage 4
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	42963	43737	240129		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_046380154.1|42963_43737_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.5	6.0e-19
>prophage 5
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	47586	48519	240129	transposase	Spiroplasma_virus(100.0%)	1	NA	NA
WP_046380157.1|47586_48519_-|transposase	IS481 family transposase	transposase	A8RHK4	Spiroplasma_virus	27.9	3.0e-09
>prophage 6
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	66115	69322	240129	transposase	Pandoravirus(50.0%)	2	NA	NA
WP_080945797.1|66115_67522_-	aminodeoxychorismate synthase component I	NA	A0A0B5J984	Pandoravirus	34.4	5.0e-40
WP_167343354.1|68443_69322_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	34.9	2.7e-31
>prophage 7
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	73600	74509	240129		Mycobacterium_phage(100.0%)	1	NA	NA
WP_052741019.1|73600_74509_+	alpha/beta hydrolase	NA	S5YK47	Mycobacterium_phage	31.2	1.1e-08
>prophage 8
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	81794	83411	240129		Catovirus(100.0%)	1	NA	NA
WP_046380175.1|81794_83411_-	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	23.1	3.3e-11
>prophage 9
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	94018	95383	240129		Pandoravirus(100.0%)	1	NA	NA
WP_046380183.1|94018_95383_+	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	36.1	1.3e-16
>prophage 10
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	105286	111263	240129		Synechococcus_phage(50.0%)	3	NA	NA
WP_080945805.1|105286_106366_+	RNA polymerase sigma factor	NA	F4YCU2	Synechococcus_phage	38.1	1.7e-40
WP_155404326.1|106971_107520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046380300.1|108398_111263_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	50.1	3.4e-269
>prophage 11
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	132038	135651	240129		Acinetobacter_phage(66.67%)	3	NA	NA
WP_046380205.1|132038_134414_+	xanthine dehydrogenase family protein	NA	A0A0P0I429	Acinetobacter_phage	24.8	8.8e-45
WP_046380206.1|134410_134884_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	34.8	1.9e-12
WP_046380207.1|134874_135651_+	alpha/beta fold hydrolase	NA	G1DB77	Mycobacterium_phage	37.3	7.4e-09
>prophage 12
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	139286	140801	240129	transposase	Puniceispirillum_phage(50.0%)	2	NA	NA
WP_167343358.1|139286_139592_+	Rieske 2Fe-2S domain-containing protein	NA	S4S2K9	Puniceispirillum_phage	31.2	4.3e-05
WP_155404333.1|139669_140801_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	39.3	2.4e-40
>prophage 13
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	144342	147081	240129		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_046380213.1|144342_147081_-	AAA family ATPase	NA	A0A2K5B264	Erysipelothrix_phage	40.5	1.0e-193
>prophage 14
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	150495	154727	240129		Gordonia_phage(33.33%)	6	NA	NA
WP_046380216.1|150495_150855_-	Lsr2 family protein	NA	A0A160DEV0	Gordonia_phage	46.2	1.2e-19
WP_155404336.1|151783_151933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155404337.1|152167_152671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046380311.1|152804_153287_-	hypothetical protein	NA	A0A291LH81	Streptomyces_phage	34.3	8.1e-06
WP_167343360.1|153424_153583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046380312.1|153929_154727_-	N-formylglutamate amidohydrolase	NA	A0A0U4JBQ5	Vibrio_phage	25.3	3.0e-05
>prophage 15
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	159316	161395	240129		Mycobacterium_phage(100.0%)	1	NA	NA
WP_046380222.1|159316_161395_-	ATPase AAA	NA	A0A218M9A2	Mycobacterium_phage	30.5	1.4e-09
>prophage 16
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	168802	170416	240129		Corynebacterium_phage(100.0%)	1	NA	NA
WP_046380226.1|168802_170416_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1W6JQH9	Corynebacterium_phage	46.9	1.4e-25
>prophage 17
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	174003	178457	240129		Gordonia_phage(50.0%)	6	NA	NA
WP_167343361.1|174003_174594_-	helix-turn-helix domain-containing protein	NA	A0A160DCX5	Gordonia_phage	54.7	5.1e-10
WP_046380229.1|174887_175478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052741037.1|175474_175870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046380230.1|175866_176421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046380231.1|176414_176741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046380233.1|177170_178457_+	hypothetical protein	NA	W8EI75	Mycobacterium_phage	27.7	7.4e-06
>prophage 18
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	183094	185095	240129		Gordonia_phage(100.0%)	1	NA	NA
WP_080945816.1|183094_185095_+	cutinase family protein	NA	A0A166Y6Q9	Gordonia_phage	33.2	3.2e-08
>prophage 19
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	193596	196784	240129		Ochrobactrum_phage(50.0%)	3	NA	NA
WP_046380245.1|193596_194385_+	ParA family protein	NA	A0A240F4U1	Ochrobactrum_phage	34.8	7.7e-14
WP_046380246.1|194377_194749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155404343.1|194960_196784_-	hypothetical protein	NA	V5UNW4	Mycobacterium_phage	35.5	4.8e-75
>prophage 20
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	208039	208792	240129		Mycobacterium_phage(100.0%)	1	NA	NA
WP_046380260.1|208039_208792_-	alpha/beta hydrolase	NA	R4JP33	Mycobacterium_phage	32.3	8.2e-05
>prophage 21
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	221318	222881	240129		Staphylococcus_phage(100.0%)	1	NA	NA
WP_046380268.1|221318_222881_-	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	27.4	3.5e-18
>prophage 22
NZ_CP011296	Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence	240129	234290	235445	240129		Pandoravirus(100.0%)	1	NA	NA
WP_052741048.1|234290_235445_+	MBL fold metallo-hydrolase	NA	S4VRL9	Pandoravirus	24.1	9.3e-08
>prophage 1
NZ_CP011297	Rhodococcus erythropolis strain BG43 plasmid pRLLBG43, complete sequence	261537	115987	140358	261537	integrase,transposase,protease	Mycobacterium_phage(66.67%)	33	114347:114361	145487:145501
114347:114361	attL	CGATCGGATCGCGGA	NA	NA	NA	NA
WP_019750026.1|115987_116842_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_155716998.1|116903_117077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052416979.1|117213_118521_-	DUF4192 domain-containing protein	NA	NA	NA	NA	NA
WP_019750023.1|118624_118798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080572353.1|118819_119140_-	hypothetical protein	NA	A0A2P1JRJ6	Mycobacterium_phage	40.4	3.8e-12
WP_019750021.1|119133_119472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019750020.1|119559_120456_-	DUF1738 domain-containing protein	NA	NA	NA	NA	NA
WP_024488170.1|121359_121620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037134948.1|121845_122205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042449143.1|122258_123101_-	Fic family protein	NA	NA	NA	NA	NA
WP_007734780.1|123097_123313_-	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_167343370.1|123431_123599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042449146.1|123595_123820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024488173.1|123816_124392_-	DNA helicase	NA	NA	NA	NA	NA
WP_019750104.1|124398_124719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019750103.1|124751_124982_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	64.9	1.2e-20
WP_019750102.1|125553_127116_-	ParB N-terminal domain-containing protein	NA	A0A2P1N496	Mycobacterium_phage	37.9	2.3e-62
WP_019750101.1|127202_127457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007734790.1|127530_127740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127160090.1|128274_128643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019750098.1|128639_129929_+	caspase family protein	NA	NA	NA	NA	NA
WP_046380352.1|129919_130327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046380438.1|130840_131809_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	65.7	1.5e-123
WP_080945847.1|132066_132462_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_080945848.1|132553_133090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046380441.1|133086_133824_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_167343368.1|135381_135579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046380351.1|135584_136715_-|integrase	site-specific integrase	integrase	A0A2P1CCU8	Gordonia_phage	30.3	3.8e-06
WP_046380353.1|137555_137765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029256938.1|137829_138135_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_167343371.1|138185_139025_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.9	5.7e-31
WP_155404354.1|139814_139988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029256938.1|140052_140358_+|transposase	transposase	transposase	NA	NA	NA	NA
145487:145501	attR	TCCGCGATCCGATCG	NA	NA	NA	NA
