assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000973665.2_ASM97366v2	NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	1	127797-127891	1	CRISPRCasFinder	no	cas3	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Unclear	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|31aa|up_5|NZ_CP007540.2_122933_123026_+,NA|160aa|up_4|NZ_CP007540.2_123226_123706_+,NA|38aa|up_2|NZ_CP007540.2_125173_125287_+,NA|155aa|up_0|NZ_CP007540.2_126207_126672_+,NA	NA|314aa|up_9|NZ_CP007540.2_116879_117821_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP007540.2_117863_118766_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP007540.2_119271_119967_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP007540.2_120185_122912_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP007540.2_122933_123026_+	NA	NA|160aa|up_4|NZ_CP007540.2_123226_123706_+	NA	NA|227aa|up_3|NZ_CP007540.2_123873_124554_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP007540.2_125173_125287_+	NA	NA|286aa|up_1|NZ_CP007540.2_125339_126197_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP007540.2_126207_126672_+	NA	NA|206aa|down_0|NZ_CP007540.2_129693_130311_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|461aa|down_1|NZ_CP007540.2_132321_133704_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_2|NZ_CP007540.2_133715_136034_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_3|NZ_CP007540.2_136136_137846_-	pfam05170, AsmA, AsmA family	NA|464aa|down_4|NZ_CP007540.2_137966_139358_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_5|NZ_CP007540.2_139585_140791_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	cas3|694aa|down_6|NZ_CP007540.2_140826_142908_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|228aa|down_7|NZ_CP007540.2_142913_143597_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|704aa|down_8|NZ_CP007540.2_143601_145713_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|92aa|down_9|NZ_CP007540.2_145731_146007_-	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit
GCF_000973665.2_ASM97366v2	NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	2	644324-644575	1	PILER-CR	no		RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	TTTTACAGGGCGGCAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	53	1	1	644378-644436	NZ_CP007540.2_644796-644854	NA	2	2	Orphan	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|55aa|down_8|NZ_CP007540.2_657043_657208_-	NA|424aa|up_9|NZ_CP007540.2_631075_632347_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|269aa|up_8|NZ_CP007540.2_632544_633351_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|305aa|up_7|NZ_CP007540.2_634790_635705_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|285aa|up_6|NZ_CP007540.2_635715_636570_-	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY	NA|278aa|up_5|NZ_CP007540.2_636903_637737_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|316aa|up_4|NZ_CP007540.2_637747_638695_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|524aa|up_3|NZ_CP007540.2_638934_640506_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|NZ_CP007540.2_641035_641806_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP007540.2_641831_642722_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP007540.2_642819_643965_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|NZ_CP007540.2_645534_646473_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|NZ_CP007540.2_646570_647560_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|NZ_CP007540.2_647580_648912_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|NZ_CP007540.2_648978_650187_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|NZ_CP007540.2_650220_652515_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|NZ_CP007540.2_652584_653949_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|NZ_CP007540.2_654263_655595_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|NZ_CP007540.2_655620_656931_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|NZ_CP007540.2_657043_657208_-	NA	NA|234aa|down_9|NZ_CP007540.2_657231_657933_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCF_000973665.2_ASM97366v2	NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	3	965960-967391	2,2,1,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	AAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAAA,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	36,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	16,23,23,16,16	23	TypeI-E	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|381aa|up_9|NZ_CP007540.2_951860_953003_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP007540.2_953046_955803_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP007540.2_955860_957156_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP007540.2_957207_959442_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP007540.2_959526_959883_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP007540.2_959848_960145_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP007540.2_960912_961713_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP007540.2_961940_963578_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP007540.2_963660_964959_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP007540.2_965094_965766_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP007540.2_967488_968286_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP007540.2_968375_968738_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP007540.2_969173_970973_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP007540.2_970972_972685_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP007540.2_972760_973495_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP007540.2_973582_974536_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP007540.2_974919_977619_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP007540.2_978180_979716_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP007540.2_979732_980335_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP007540.2_980357_981416_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_000973665.2_ASM97366v2	NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	4	984153-986316	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	35,35	35	TypeI-E	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP007540.2_972760_973495_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP007540.2_973582_974536_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP007540.2_974919_977619_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP007540.2_978180_979716_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP007540.2_979732_980335_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP007540.2_980357_981416_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP007540.2_981425_982151_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|236aa|up_2|NZ_CP007540.2_982150_982858_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP007540.2_982854_983772_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP007540.2_983774_984068_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP007540.2_986330_987377_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP007540.2_987627_988536_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP007540.2_988545_989985_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP007540.2_989971_990577_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP007540.2_990594_990951_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP007540.2_991141_991453_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP007540.2_991471_992182_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP007540.2_992181_992661_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP007540.2_992657_993707_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP007540.2_993687_994449_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
