The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	4488371	1680532	1689703	4488371	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1680532_1681480_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
WP_000824854.1|1681463_1682195_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1682175_1682283_-	protein YohO	NA	NA	NA	NA	NA
WP_001240416.1|1682342_1683074_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|1683296_1684982_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1684978_1685698_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1685744_1686212_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001221799.1|1686268_1686799_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703136.1|1686970_1687429_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
WP_000195336.1|1687669_1689703_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	4488371	1846877	1854144	4488371		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1846877_1847297_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457654.1|1847299_1848568_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	1.9e-227
WP_000208509.1|1849022_1849235_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131109.1|1849245_1849434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080686.1|1849692_1850904_-	porin	NA	Q1MVN1	Enterobacteria_phage	56.2	2.6e-109
WP_000107430.1|1851553_1851853_+	membrane protein	NA	NA	NA	NA	NA
WP_000377052.1|1851944_1852640_+	phosphohydrolase	NA	S4W232	Pandoravirus	28.0	1.6e-07
WP_001157316.1|1852713_1854144_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	7.8e-105
>prophage 3
NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	4488371	2140355	2147256	4488371		Salmonella_phage(28.57%)	11	NA	NA
WP_000230462.1|2140355_2141162_-	peptide ABC transporter ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	27.4	4.6e-14
WP_001128869.1|2141163_2142156_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA	NA
WP_001146139.1|2142155_2143046_-	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
WP_001543117.1|2143169_2143571_+	DUF4102 domain-containing protein	NA	K7PGY1	Enterobacteria_phage	58.4	8.4e-33
WP_001135892.1|2143536_2143710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001551817.1|2143950_2144838_-	hypothetical protein	NA	A0A0P0ZCT1	Stx2-converting_phage	37.7	2.1e-36
WP_001557003.1|2145143_2145317_+	hypothetical protein	NA	S4TSR3	Salmonella_phage	80.6	4.9e-22
WP_001605117.1|2145732_2145873_+	hypothetical protein	NA	A0A0U2KD26	Escherichia_phage	77.1	6.5e-09
WP_001640522.1|2145911_2146211_+	pertussis toxin subunit	NA	A0A0U2KD26	Escherichia_phage	55.7	8.5e-14
WP_000727929.1|2146137_2146563_+	peptidase	NA	NA	NA	NA	NA
WP_077905325.1|2146941_2147256_+	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	86.1	4.3e-40
>prophage 4
NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	4488371	2570400	2584682	4488371	tail	Escherichia_phage(50.0%)	18	NA	NA
WP_000497452.1|2570400_2570640_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	2.5e-32
WP_001036547.1|2570857_2571022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001529135.1|2571519_2572329_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|2572401_2572779_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158844.1|2572926_2573469_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	66.5	8.1e-71
WP_000733298.1|2573661_2574390_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.5	1.2e-61
WP_000275698.1|2574406_2574820_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	5.5e-19
WP_000917275.1|2575869_2576994_-	type III secretion system effector SopF	NA	NA	NA	NA	NA
WP_072102280.1|2577440_2577605_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	9.6e-20
WP_000557907.1|2577838_2578672_-	5-methylcytosine-specific endonuclease McrA	NA	NA	NA	NA	NA
WP_000905000.1|2578778_2579333_-	site-specific DNA recombinase	NA	A0A1S6L009	Salmonella_phage	88.9	4.4e-88
WP_001115580.1|2579362_2579881_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	60.9	2.9e-54
WP_001008237.1|2580454_2580898_-|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	99.3	1.8e-81
WP_071585783.1|2580918_2581323_-|tail	phage tail protein	tail	A0A0F7LBW5	Escherichia_phage	96.0	2.4e-64
WP_001130332.1|2581271_2581733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001180571.1|2581707_2582172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000340437.1|2582693_2583308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000444505.1|2583431_2584682_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
>prophage 5
NZ_CP007540	Salmonella enterica subsp. enterica serovar Montevideo str. CDC 86-0391 isolate B94-007410 chromosome, complete genome	4488371	3433909	3494781	4488371	tRNA,transposase,plate,protease	Saccharomonospora_phage(22.22%)	54	NA	NA
WP_000118730.1|3433909_3435253_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001045934.1|3435256_3435793_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000119439.1|3435859_3436345_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_000338341.1|3436487_3436871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081549.1|3436855_3437341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000312803.1|3437634_3438120_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_077905981.1|3438373_3438706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000013884.1|3439006_3440515_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000996815.1|3440538_3441081_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175471.1|3441142_3441433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000449780.1|3441518_3444182_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.5	1.2e-77
WP_000806697.1|3444549_3445452_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750536.1|3445438_3446263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108008.1|3446259_3446754_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371485.1|3446769_3448653_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145238.1|3448649_3449645_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000367618.1|3449655_3450705_+	ImpA family type VI secretion system protein	NA	NA	NA	NA	NA
WP_001562201.1|3451235_3451967_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.0	9.9e-40
WP_000917872.1|3452030_3452498_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801238.1|3452494_3453217_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052773.1|3453251_3454007_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|3454078_3455446_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207221.1|3455501_3456272_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230970.1|3456349_3457150_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127559.1|3457281_3458457_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648538.1|3458561_3459476_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154880.1|3459496_3460300_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.0	3.0e-37
WP_000502119.1|3460537_3460996_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_001140160.1|3466953_3467520_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_000594021.1|3467709_3468741_+	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.2	5.5e-36
WP_001287486.1|3468733_3469387_+	methionine ABC transporter permease MetI	NA	NA	NA	NA	NA
WP_000874215.1|3469425_3470241_+	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA	NA
WP_001202315.1|3470359_3470764_+	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
WP_000093989.1|3470760_3471468_+|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_001260672.1|3471578_3473297_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000252581.1|3473370_3474072_-	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA	NA
WP_000560524.1|3474103_3474526_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_001185319.1|3474522_3475068_-	YaeQ family protein	NA	NA	NA	NA	NA
WP_000955207.1|3475247_3475466_+	YaeP family protein	NA	NA	NA	NA	NA
WP_000062330.1|3475452_3475713_+	Rho-binding antiterminator	NA	NA	NA	NA	NA
WP_000210068.1|3475796_3477089_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_000901088.1|3477151_3477541_-	VOC family protein	NA	NA	NA	NA	NA
WP_001021042.1|3477596_3479738_-	lysine decarboxylase LdcC	NA	NA	NA	NA	NA
WP_000524168.1|3479813_3481577_-	chitinase	NA	NA	NA	NA	NA
WP_000055753.1|3481755_3482715_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_001294832.1|3482727_3486210_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.8	3.7e-209
WP_000569411.1|3486233_3486830_-	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	39.3	4.3e-25
WP_000741216.1|3486826_3487975_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_000565950.1|3487974_3488763_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_000210741.1|3488766_3489222_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_001139265.1|3489327_3490353_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_000758966.1|3490356_3490842_-	molecular chaperone Skp	NA	NA	NA	NA	NA
WP_001240931.1|3490964_3493397_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_000949017.1|3493428_3494781_-|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
