The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	0	4222	1861792	transposase	Paenibacillus_phage(66.67%)	3	NA	NA
WP_002948584.1|241_1606_+	chromosomal replication initiator protein DnaA	NA	A0A0K2CYY7	Paenibacillus_phage	28.7	2.1e-06
WP_011680575.1|1760_2897_+	DNA polymerase III subunit beta	NA	D0R7I4	Paenibacillus_phage	33.1	1.5e-13
WP_046206376.1|2965_4222_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.1	1.2e-125
>prophage 2
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	13609	16135	1861792		Tupanvirus(50.0%)	2	NA	NA
WP_002948598.1|13609_14152_+	hypoxanthine phosphoribosyltransferase	NA	A0A2K9L634	Tupanvirus	27.1	3.6e-10
WP_011680579.1|14167_16135_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	C7U047	Ostreococcus_tauri_virus	43.8	7.4e-114
>prophage 3
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	28814	29780	1861792		Tupanvirus(100.0%)	1	NA	NA
WP_011680585.1|28814_29780_+	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	34.1	4.2e-38
>prophage 4
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	34573	43890	1861792		Cyanophage(33.33%)	6	NA	NA
WP_011680589.1|34573_35281_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	40.5	3.0e-41
WP_011680590.1|35336_39062_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.4	2.1e-37
WP_046206379.1|39230_40670_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.4	1.8e-56
WP_011680592.1|40700_41720_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.4	2.2e-61
WP_011225263.1|41719_42274_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.9	2.4e-25
WP_011680593.1|42342_43890_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.9	2.1e-47
>prophage 5
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	48042	129243	1861792	transposase,tRNA,protease	Streptococcus_phage(21.05%)	59	NA	NA
WP_002948169.1|48042_48531_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.2	9.3e-18
WP_011226736.1|48517_49609_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_011226737.1|49801_50557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002948159.1|51071_52370_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.5	5.0e-18
WP_011226739.1|53233_54925_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.7	8.1e-77
WP_002949046.1|55082_55508_+	arginine repressor	NA	NA	NA	NA	NA
WP_011225277.1|55507_55867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680597.1|55859_58418_+	DNA mismatch repair protein MutS	NA	A0A2P0VN50	Tetraselmis_virus	25.0	4.7e-36
WP_011680598.1|58451_58907_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_011680599.1|58920_59295_-	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014621013.1|59518_59824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680601.1|59875_61819_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	1.1e-61
WP_011680602.1|61948_62170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680603.1|62321_62912_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_011680604.1|62918_63473_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_011680605.1|63568_64840_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_011680606.1|64875_66015_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.2e-118
WP_002949058.1|66191_66590_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_011680607.1|72995_77390_+	DNA polymerase III subunit alpha	NA	A0A0A7RWA3	Clostridium_phage	36.5	4.0e-19
WP_011680608.1|77553_78795_+	aminopeptidase	NA	NA	NA	NA	NA
WP_002886331.1|78814_79045_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011225289.1|79694_80246_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011680612.1|83153_83921_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002949105.1|84038_85079_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_011680613.1|85188_85659_-	small multi-drug export protein	NA	NA	NA	NA	NA
WP_002949111.1|85902_86358_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011680614.1|86358_88809_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.1	2.5e-127
WP_095559203.1|90392_91962_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_011680616.1|92025_93279_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	24.8	7.2e-14
WP_011680617.1|93481_95707_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_011680618.1|95715_96486_+	SseB family protein	NA	NA	NA	NA	NA
WP_002948444.1|96558_97179_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_011680619.1|97560_98904_+|tRNA	cysteine--tRNA ligase	tRNA	F1C979	Terra1_virus	37.2	5.7e-49
WP_011680620.1|98896_99298_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_011680621.1|99810_99999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680622.1|100069_100312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011225307.1|100359_101103_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_014607853.1|101105_101621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680624.1|101629_102490_+	DegV family protein	NA	NA	NA	NA	NA
WP_011680625.1|102790_103291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011226761.1|103438_104395_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_002886374.1|104603_105050_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_002947796.1|105077_105470_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_023909322.1|105944_106208_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SAF1	Streptococcus_phage	65.6	7.0e-28
WP_011225312.1|106457_106562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680626.1|106604_108320_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_011680632.1|113697_114378_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.2	1.0e-107
WP_011680633.1|115094_115265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680634.1|115288_116944_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011680635.1|117046_118105_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004261408.1|118104_119058_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011680636.1|119054_120752_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.9	2.2e-18
WP_041827624.1|120846_121080_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011680637.1|121244_122195_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011680638.1|122191_122872_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.2	1.4e-109
WP_011680639.1|123028_124222_-	glycosyltransferase	NA	M1HTE2	Paramecium_bursaria_Chlorella_virus	30.5	2.9e-44
WP_041827626.1|124289_125453_-	nucleotide sugar dehydrogenase	NA	M1HV26	Paramecium_bursaria_Chlorella_virus	50.7	3.0e-99
WP_162465557.1|127187_127870_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	96.5	4.6e-124
WP_014607865.1|128025_129243_+	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	29.3	7.5e-32
>prophage 6
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	132786	138763	1861792		Clostridium_phage(33.33%)	5	NA	NA
WP_011680647.1|132786_133371_+	peptidoglycan hydrolase	NA	A0A0A7RUS8	Clostridium_phage	32.9	3.6e-08
WP_011225328.1|133561_134644_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_011680648.1|134636_135251_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_011226783.1|135379_137203_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.0	3.3e-132
WP_046206380.1|137629_138763_+	molecular chaperone DnaJ	NA	K7YGN1	Megavirus	27.2	2.3e-19
>prophage 7
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	153046	154237	1861792		Orpheovirus(100.0%)	1	NA	NA
WP_011680651.1|153046_154237_+	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	35.5	4.7e-39
>prophage 8
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	159560	161165	1861792		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_002949230.1|159560_161165_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	46.2	6.6e-137
>prophage 9
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	166636	169484	1861792		Lactococcus_phage(50.0%)	2	NA	NA
WP_011680658.1|166636_167095_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A1W6JK40	Lactococcus_phage	28.7	4.5e-06
WP_046206381.1|167264_169484_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1S6L1R3	Vibrio_phage	34.7	2.6e-06
>prophage 10
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	173628	174243	1861792		Synechococcus_phage(100.0%)	1	NA	NA
WP_046206383.1|173628_174243_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.1	1.2e-14
>prophage 11
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	178493	179234	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_002949253.1|178493_179234_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	5.7e-27
>prophage 12
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	184538	187894	1861792		Cedratvirus(50.0%)	3	NA	NA
WP_002947634.1|184538_185309_+	Fe-S cluster assembly ATPase SufC	NA	A0A285PWH2	Cedratvirus	26.9	1.9e-09
WP_011680669.1|185345_186608_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_046206385.1|186661_187894_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	45.3	3.2e-107
>prophage 13
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	193501	194440	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_046206388.1|193501_194440_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.3	2.8e-26
>prophage 14
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	198873	199581	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_014607906.1|198873_199581_+	metal ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.9	3.6e-10
>prophage 15
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	207691	218883	1861792	transposase,tRNA,protease	uncultured_virus(33.33%)	10	NA	NA
WP_002949314.1|207691_208441_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	44.2	5.4e-25
WP_023909358.1|208453_209248_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_023909360.1|209264_210527_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_041827639.1|210612_212460_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	22.3	8.2e-06
WP_046206394.1|213076_215017_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002949330.1|215016_215820_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	29.0	7.9e-14
WP_002949332.1|215989_216277_+	co-chaperone GroES	NA	A0A221S2Z4	uncultured_virus	42.4	2.3e-08
WP_011225399.1|216325_217945_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	55.7	4.3e-152
WP_014607918.1|218386_218554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014621112.1|218664_218883_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	56.3	2.6e-12
>prophage 16
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	224842	239811	1861792	tRNA	Bacillus_virus(33.33%)	12	NA	NA
WP_002883644.1|224842_225382_+	transcription termination/antitermination protein NusG	NA	F5B3X4	Synechococcus_phage	31.1	4.9e-12
WP_014607924.1|225503_225992_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002947934.1|227869_230371_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	66.5	0.0e+00
WP_002949384.1|230459_230651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080998410.1|230667_231024_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_046206395.1|231543_232308_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_011225415.1|232601_234056_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	43.8	3.9e-104
WP_002949400.1|234067_234889_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	55.9	3.8e-72
WP_011680699.1|234904_235345_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_011680700.1|235446_236784_+	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	35.4	1.6e-67
WP_011680701.1|236893_239215_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_002949408.1|239214_239811_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	34.9	2.5e-25
>prophage 17
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	244518	247614	1861792		Hyphantria_cunea_nuclear_polyhedrosis_virus(100.0%)	1	NA	NA
WP_023909381.1|244518_247614_+	DEAD/DEAH box helicase family protein	NA	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	27.0	7.0e-42
>prophage 18
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	264584	266938	1861792		uncultured_Mediterranean_phage(50.0%)	4	NA	NA
WP_011226851.1|264584_265298_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	32.1	7.5e-08
WP_011226852.1|265290_265872_+	segregation/condensation protein B	NA	NA	NA	NA	NA
WP_002949498.1|265964_266690_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011225443.1|266686_266938_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	54.4	5.8e-16
>prophage 19
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	275018	275438	1861792		Bacillus_phage(100.0%)	1	NA	NA
WP_041827643.1|275018_275438_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	47.1	6.1e-10
>prophage 20
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	285091	289898	1861792		Klosneuvirus(50.0%)	3	NA	NA
WP_011225459.1|285091_285805_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	28.2	3.0e-09
WP_011680725.1|285969_286818_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011680727.1|287006_289898_+	AMP-binding protein	NA	A0A2K9L3I8	Tupanvirus	27.4	5.7e-38
>prophage 21
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	296818	297886	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_002949604.1|296818_297886_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.1	5.2e-29
>prophage 22
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	301530	303207	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_014621157.1|301530_303207_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	1.6e-21
>prophage 23
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	310311	322587	1861792	transposase,tRNA	Bacillus_phage(57.14%)	12	NA	NA
WP_011680737.1|310311_311001_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.1	2.2e-28
WP_002949640.1|310997_312515_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	28.4	7.9e-23
WP_011680738.1|312636_313116_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_011680739.1|313112_314288_+	helicase DnaB	NA	NA	NA	NA	NA
WP_011680740.1|314291_315194_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	33.4	4.4e-29
WP_011680741.1|315299_316610_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_011680745.1|316982_317333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014607975.1|317947_318142_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	61.0	2.8e-10
WP_014607976.1|318196_318535_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.0	1.7e-18
WP_002947160.1|318510_318699_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011680747.1|319816_320992_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.5	8.2e-36
WP_011680748.1|321309_322587_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	2.6e-91
>prophage 24
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	328235	329657	1861792		Moraxella_phage(100.0%)	1	NA	NA
WP_011680753.1|328235_329657_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.9	3.9e-40
>prophage 25
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	334620	337452	1861792		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_011680757.1|334620_337452_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.7	5.2e-20
>prophage 26
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	344231	348546	1861792	protease	Klosneuvirus(50.0%)	6	NA	NA
WP_002946733.1|344231_345326_+	cystathionine gamma-synthase	NA	A0A1V0SL56	Klosneuvirus	24.8	5.3e-13
WP_011680761.1|345336_346500_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_011680762.1|346575_346743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680763.1|346783_347059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002946740.1|347188_347818_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_002949732.1|347955_348546_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	56.2	2.7e-56
>prophage 27
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	352572	358038	1861792		Streptococcus_phage(60.0%)	5	NA	NA
WP_002949740.1|352572_353337_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	6.8e-15
WP_011680767.1|353336_354047_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	6.3e-15
WP_011680768.1|355009_355936_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	79.2	2.8e-140
WP_011680769.1|356037_356664_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	60.4	1.1e-68
WP_011680770.1|356718_358038_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	52.8	1.7e-122
>prophage 28
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	368308	373045	1861792		Erysipelothrix_phage(33.33%)	4	NA	NA
WP_014607995.1|368308_369673_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.7	2.3e-74
WP_011226888.1|369771_370764_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	38.5	3.9e-55
WP_002949766.1|370916_372275_-	aspartate kinase	NA	NA	NA	NA	NA
WP_011680778.1|372406_373045_+	HAD family hydrolase	NA	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	30.4	1.3e-11
>prophage 29
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	377863	378598	1861792		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_002949780.1|377863_378598_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	33.1	7.0e-17
>prophage 30
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	392884	397386	1861792		Erysipelothrix_phage(50.0%)	4	NA	NA
WP_011680789.1|392884_394237_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.3	1.5e-36
WP_041827649.1|394338_395595_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_046206398.1|395640_396132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002949814.1|396240_397386_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	30.8	2.0e-18
>prophage 31
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	406008	419762	1861792	transposase,tRNA	Bacillus_phage(25.0%)	11	NA	NA
WP_011680798.1|406008_407217_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	47.5	7.4e-40
WP_011680799.1|407294_409175_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	32.3	1.6e-65
WP_002948672.1|409351_410608_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.4	1.4e-126
WP_011680800.1|410675_411179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011680801.1|411255_412008_-	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	30.5	7.4e-22
WP_103672673.1|412126_413179_-	AAA family ATPase	NA	A0A2K9VDE3	Lactobacillus_phage	43.6	1.5e-73
WP_011680803.1|413522_414875_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_011680804.1|415132_415543_+	peptide deformylase	NA	A0A2I7QMX1	Vibrio_phage	33.6	7.8e-10
WP_002945408.1|415732_416176_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011680805.1|416179_417994_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.0	3.3e-28
WP_011225561.1|417983_419762_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	2.0e-46
>prophage 32
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	426773	433920	1861792	tRNA	Erwinia_phage(33.33%)	5	NA	NA
WP_011680810.1|426773_427835_+	phosphate starvation-inducible protein PhoH	NA	W8D063	Erwinia_phage	48.2	4.5e-49
WP_014608035.1|429044_429458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002948125.1|430141_430549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011226921.1|430742_432746_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.4	2.1e-92
WP_014608039.1|433023_433920_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	39.4	2.0e-05
>prophage 33
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	438174	444503	1861792	tRNA,protease	Mycobacterium_phage(33.33%)	5	NA	NA
WP_023909440.1|438174_438882_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	25.2	4.5e-05
WP_014608045.1|438943_440086_+|protease	protease	protease	NA	NA	NA	NA
WP_023909441.1|440421_443040_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	35.7	3.5e-63
WP_014621221.1|443207_443423_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_024704216.1|443552_444503_+	lysozyme	NA	F8HGP2	Streptococcus_phage	37.1	6.1e-05
>prophage 34
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	451208	452339	1861792		Mycobacterium_phage(100.0%)	1	NA	NA
WP_011680827.1|451208_452339_+	acetylornithine transaminase	NA	B5LJF5	Mycobacterium_phage	28.0	4.7e-12
>prophage 35
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	459215	461867	1861792	tRNA	Catovirus(100.0%)	1	NA	NA
WP_011680835.1|459215_461867_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.2	5.4e-152
>prophage 36
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	470168	478581	1861792		Streptococcus_phage(66.67%)	10	NA	NA
WP_002949971.1|470168_471365_+	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	2.8e-31
WP_002946314.1|471613_472372_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_002946312.1|472610_473240_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	66.5	5.0e-72
WP_011225600.1|473248_474124_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	49.7	4.1e-72
WP_011680838.1|474120_474927_+	signal peptidase II	NA	NA	NA	NA	NA
WP_002946304.1|474913_475234_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	56.1	2.7e-26
WP_002949974.1|475236_476103_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.5	7.2e-122
WP_011680839.1|476239_477475_+	ammonium transporter	NA	NA	NA	NA	NA
WP_011680840.1|477485_477827_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_011680841.1|477924_478581_+	glycoside hydrolase family 73 protein	NA	Q332B8	Clostridium_botulinum_C_phage	32.5	5.6e-10
>prophage 37
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	491606	494039	1861792	transposase	Catovirus(50.0%)	2	NA	NA
WP_011680849.1|491606_492365_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	36.1	1.2e-19
WP_095559203.1|492468_494039_-|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
>prophage 38
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	497463	502920	1861792		Bodo_saltans_virus(25.0%)	5	NA	NA
WP_011680856.1|497463_498354_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.3	1.4e-08
WP_011680857.1|498581_499103_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_011680858.1|499450_500728_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	38.9	5.4e-65
WP_046206400.1|500752_501679_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	30.0	1.1e-24
WP_011680859.1|501831_502920_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	8.9e-61
>prophage 39
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	506515	507772	1861792	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_002948672.1|506515_507772_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.4	1.4e-126
>prophage 40
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	512290	515071	1861792	transposase	Streptococcus_phage(50.0%)	3	NA	NA
WP_082306376.1|512290_513595_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	73.2	5.5e-174
WP_155085483.1|513998_514223_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_046206402.1|514396_515071_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.7e-30
>prophage 41
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	524591	528128	1861792		Bacillus_phage(100.0%)	2	NA	NA
WP_011680871.1|524591_526328_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.5	7.1e-36
WP_011680872.1|526340_528128_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	1.1e-52
>prophage 42
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	532623	538293	1861792		Catovirus(33.33%)	7	NA	NA
WP_011680878.1|532623_533748_+	ThiF family adenylyltransferase	NA	A0A1V0SAV8	Catovirus	27.3	5.1e-11
WP_004197224.1|533752_534664_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.0	1.8e-22
WP_002952657.1|534665_535388_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011226972.1|535576_536560_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_046206406.1|536738_536936_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_046206407.1|536952_537444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046206408.1|537522_538293_+	nucleoside phosphorylase	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	38.8	7.8e-19
>prophage 43
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	542790	544107	1861792		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_023909503.1|542790_544107_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	44.4	2.8e-93
>prophage 44
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	549549	550932	1861792		Tupanvirus(100.0%)	1	NA	NA
WP_014608101.1|549549_550932_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L277	Tupanvirus	35.0	1.9e-31
>prophage 45
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	557554	559501	1861792	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_002950123.1|557554_559501_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	37.6	1.3e-118
>prophage 46
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	565935	568826	1861792	protease	Bacillus_phage(33.33%)	3	NA	NA
WP_002950145.1|565935_566796_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.7	7.7e-84
WP_002950147.1|566903_567407_+	dihydrofolate reductase	NA	A0A0K2QQK4	Ralstonia_phage	39.3	1.1e-16
WP_002950151.1|567599_568826_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.4	5.0e-137
>prophage 47
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	573593	578636	1861792		Bacillus_virus(100.0%)	2	NA	NA
WP_011680910.1|573593_575543_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.6	3.0e-123
WP_014608111.1|576179_578636_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	33.0	1.1e-95
>prophage 48
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	587206	592669	1861792	protease	Cronobacter_phage(50.0%)	5	NA	NA
WP_011680918.1|587206_589465_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	41.2	8.4e-130
WP_011680919.1|589705_590686_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_011225686.1|590754_590985_+	DUF1797 family protein	NA	NA	NA	NA	NA
WP_014608117.1|591254_591935_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011225688.1|591934_592669_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.5e-35
>prophage 49
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	598073	598928	1861792		Enterococcus_phage(100.0%)	1	NA	NA
WP_011680925.1|598073_598928_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	40.7	4.7e-41
>prophage 50
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	605718	631209	1861792	transposase	Streptococcus_phage(60.0%)	24	NA	NA
WP_011225698.1|605718_606540_+	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	27.2	8.3e-19
WP_014621355.1|606536_607130_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_002950233.1|608394_608541_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_011680932.1|608585_608822_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_024704031.1|608880_611334_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.5	4.4e-92
WP_002950240.1|611355_611820_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.4	8.8e-42
WP_011680934.1|611973_613380_+	Cof-type HAD-IIB family hydrolase	NA	A0A1V0S9I2	Catovirus	42.3	5.1e-24
WP_002950243.1|613381_613747_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011680935.1|613849_614935_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_004197422.1|615252_616254_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	3.7e-21
WP_014608125.1|616312_616510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680937.1|617392_618508_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	99.6	5.2e-157
WP_011680938.1|618554_619010_-	YueI family protein	NA	W6LLD2	Streptococcus_phage	98.0	2.2e-77
WP_011680939.1|619218_620523_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	1.4e-246
WP_014621725.1|620721_622026_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.0	1.3e-167
WP_011680940.1|622098_622284_-	hypothetical protein	NA	W6LMT3	Streptococcus_phage	96.7	3.0e-25
WP_002947233.1|622445_624632_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.2	0.0e+00
WP_024009810.1|624793_625957_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.2	1.7e-219
WP_002947238.1|625953_626631_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	100.0	1.9e-122
WP_011680943.1|626620_627478_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_011680944.1|627490_628558_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_011225712.1|628558_629725_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.9	1.6e-39
WP_011680945.1|629754_630861_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_002947244.1|630870_631209_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	47.2	1.8e-20
>prophage 51
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	639156	642404	1861792		Lactococcus_phage(66.67%)	3	NA	NA
WP_011680952.1|639156_640518_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	D0R096	Streptococcus_phage	77.3	1.1e-201
WP_011680955.1|641724_641946_+	helix-turn-helix domain-containing protein	NA	A0A1P8BML9	Lactococcus_phage	82.1	4.3e-23
WP_011227026.1|641945_642404_+	adenine methyltransferase	NA	A0A1P8BMM5	Lactococcus_phage	72.4	5.1e-58
>prophage 52
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	660253	669057	1861792	tRNA	Phage_TP(25.0%)	9	NA	NA
WP_011680967.1|660253_661540_+	U32 family peptidase	NA	Q6DW11	Phage_TP	32.2	7.9e-40
WP_011680968.1|661909_662449_-	biotin transporter BioY	NA	NA	NA	NA	NA
WP_011680969.1|662543_662828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002886106.1|662953_663166_+	hypothetical protein	NA	A0A223LEC3	Bacillus_phage	48.5	1.3e-11
WP_011680970.1|663200_664535_-	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_011680971.1|664729_665038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680972.1|665097_666318_-	DNA cytosine methyltransferase	NA	A7XXH6	Thermus_virus	35.3	9.1e-46
WP_011680973.1|666435_667203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680974.1|667566_669057_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	38.9	1.5e-90
>prophage 53
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	673935	681660	1861792		Bacillus_phage(33.33%)	7	NA	NA
WP_046206421.1|673935_674883_-	N-acetylmuramoyl-L-alanine amidase	NA	A9QTG1	Bacillus_phage	36.6	8.4e-23
WP_046206422.1|675074_675464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046206423.1|675719_676346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157738615.1|676909_677029_+	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_011680982.1|677155_677359_+	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_046206424.1|677643_678411_+	SDR family NAD(P)-dependent oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.3	4.9e-05
WP_046206425.1|678669_681660_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	23.4	5.0e-21
>prophage 54
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	688594	692484	1861792		Staphylococcus_phage(50.0%)	2	NA	NA
WP_046206431.1|688594_690196_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	47.3	1.4e-115
WP_011680991.1|691923_692484_+	LemA family protein	NA	A0A0C5K8T5	Enterococcus_phage	27.9	6.3e-10
>prophage 55
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	698562	699168	1861792		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_011680996.1|698562_699168_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.7	1.8e-58
>prophage 56
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	705323	708795	1861792	transposase	Streptococcus_phage(100.0%)	3	NA	NA
WP_011227074.1|705323_707171_+	translational GTPase TypA	NA	E4ZFJ7	Streptococcus_phage	31.4	5.3e-21
WP_002950398.1|707194_707467_+	DUF3165 family protein	NA	NA	NA	NA	NA
WP_002948672.1|707538_708795_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.4	1.4e-126
>prophage 57
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	719107	721897	1861792	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_011681009.1|719107_721897_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	25.5	3.8e-71
>prophage 58
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	728986	827642	1861792	transposase,bacteriocin,tRNA,integrase	Streptococcus_phage(32.61%)	84	718154:718172	800496:800514
718154:718172	attL	TGGCTTATTTTGATGAAAT	NA	NA	NA	NA
WP_011225787.1|728986_729583_+	thymidine kinase	NA	A0A2I6UFA9	Klebsiella_phage	49.5	1.6e-48
WP_002948472.1|729619_730699_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_011681016.1|730695_731529_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_002948474.1|731515_732121_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.7	8.0e-19
WP_011227085.1|732215_733466_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	2.0e-96
WP_014608183.1|733472_734450_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_014621429.1|734451_735063_+	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.0	4.6e-22
WP_011681019.1|735095_736835_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.6e-46
WP_011681020.1|736824_738573_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	7.1e-52
WP_002885174.1|738751_738883_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_011681022.1|738891_740442_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.3	2.0e-42
WP_014608186.1|740438_741686_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	NA	NA	NA	NA
WP_002950439.1|741703_741943_+	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA	NA
WP_046206432.1|741935_743204_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_014621432.1|743313_744570_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.1	9.1e-126
WP_046206433.1|746223_748860_-	calcium-translocating P-type ATPase, PMCA-type	NA	M1HK51	Paramecium_bursaria_Chlorella_virus	29.1	1.8e-83
WP_011681026.1|749036_750755_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	36.2	2.1e-27
WP_162484320.1|752475_752682_-	hypothetical protein	NA	A0A059NT56	Lactococcus_phage	83.8	9.0e-23
WP_011681029.1|752800_753331_-	hypothetical protein	NA	Q77S00	Lactococcus_phage	89.8	2.9e-57
WP_011681030.1|753394_753982_-	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	96.9	6.0e-104
WP_011681031.1|754364_754814_-	hypothetical protein	NA	F8HGP5	Streptococcus_phage	67.2	6.6e-18
WP_011681032.1|755032_755308_-	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	45.2	4.6e-14
WP_011681033.1|755324_755510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681035.1|755805_757311_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	36.8	3.2e-61
WP_011681036.1|757300_758161_-	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	61.1	1.3e-99
WP_011681037.1|758175_758448_-	MerR family transcriptional regulator	NA	A0A1X9I5U9	Streptococcus_phage	50.6	1.0e-18
WP_041827827.1|758435_758762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681039.1|758778_759015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681040.1|759028_759235_-	hypothetical protein	NA	A0A1X9I725	Streptococcus_phage	43.9	9.0e-07
WP_041827685.1|759753_759951_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	60.0	1.2e-13
WP_011681043.1|760079_760928_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011681044.1|761007_762174_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.3	1.1e-154
WP_011225805.1|762289_762625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002950451.1|762952_765202_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_014621437.1|765390_766266_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_011681046.1|766405_768124_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	83.2	2.2e-271
WP_011681047.1|768206_768779_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_014608202.1|768806_769352_-	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	35.6	4.4e-24
WP_002948206.1|769344_770028_-	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_011681048.1|770221_771892_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_011225813.1|772742_773042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011225814.1|773119_773443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095559203.1|774264_775834_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_011681050.1|777595_778666_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011681051.1|778783_780322_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_101415600.1|786127_787697_+|transposase	IS3 family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	51.3	4.0e-54
WP_014621725.1|787822_789127_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.0	1.3e-167
WP_002947597.1|789226_789463_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_002950487.1|789531_790452_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	36.6	3.8e-36
WP_002950490.1|790774_791365_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002950496.1|793316_793715_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_002950498.1|793777_794848_+	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	38.1	6.7e-53
WP_002950502.1|794961_796500_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.4	1.5e-16
WP_002950506.1|796492_797560_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681056.1|797561_798518_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681057.1|798621_799257_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	60.5	4.5e-73
WP_014608206.1|799351_801838_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	47.6	1.5e-212
800496:800514	attR	TGGCTTATTTTGATGAAAT	NA	NA	NA	NA
WP_011681058.1|801982_802465_+	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_004197254.1|802469_803651_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_011681059.1|803687_805034_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.8	1.9e-57
WP_041827421.1|805238_805469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002950526.1|806550_806931_+	RidA family protein	NA	NA	NA	NA	NA
WP_011681062.1|807105_807759_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	56.8	5.7e-63
WP_002950528.1|807758_808202_+	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	55.6	7.9e-40
WP_011225834.1|808194_808911_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	48.1	1.8e-62
WP_002946191.1|809030_809522_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
WP_011225836.1|810341_810530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011227118.1|810734_811505_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_011225838.1|811485_812376_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_011227120.1|812372_813347_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.5	8.9e-137
WP_002945081.1|813343_814255_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
WP_011227121.1|814272_814494_+	dipeptidase, truncated	NA	NA	NA	NA	NA
WP_101361296.1|814453_815023_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_011225841.1|815029_815266_+	peptide hydrolase	NA	NA	NA	NA	NA
WP_080998416.1|815216_815435_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002944716.1|815565_815766_+	cold shock domain-containing protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.1e-12
WP_011681063.1|816045_816246_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	89.4	2.9e-26
WP_002947843.1|816576_817752_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.8	1.8e-35
WP_082306377.1|817872_820071_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	2.4e-65
WP_011681065.1|820270_821446_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.8	1.8e-35
WP_011225850.1|823296_824208_+	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	41.4	2.8e-60
WP_011681066.1|824229_825414_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_082306378.1|825355_825937_+	serine acetyltransferase	NA	NA	NA	NA	NA
WP_011681068.1|826466_827642_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.2	6.5e-33
>prophage 59
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	831815	844824	1861792	transposase,integrase	Clostridium_botulinum_C_phage(14.29%)	12	829233:829248	846426:846441
829233:829248	attL	TATCATTATGATGGTT	NA	NA	NA	NA
WP_041827689.1|831815_832529_+	N-acetylmuramidase	NA	Q332B8	Clostridium_botulinum_C_phage	32.1	6.8e-09
WP_162484321.1|832931_833336_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.4	5.2e-22
WP_011681073.1|833508_834417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011681075.1|834624_836433_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A0A1J0F994	Only_Syngen_Nebraska_virus	38.1	4.7e-99
WP_002950574.1|836549_836879_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_011681076.1|837074_837716_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011225872.1|837724_838354_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	1.5e-28
WP_011681077.1|838366_839218_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_082306381.1|840578_840770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081247979.1|841278_841650_+	alcohol dehydrogenase catalytic domain-containing protein	NA	E3SJ82	Synechococcus_phage	46.8	9.6e-07
WP_081247978.1|841646_842312_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	26.5	3.8e-14
WP_011681079.1|843261_844824_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.4	6.4e-20
846426:846441	attR	TATCATTATGATGGTT	NA	NA	NA	NA
>prophage 60
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	848946	857158	1861792		Cafeteria_roenbergensis_virus(40.0%)	8	NA	NA
WP_046206437.1|848946_849636_+	helix-turn-helix transcriptional regulator	NA	E8ZDN4	Streptococcus_phage	53.5	1.7e-65
WP_002950602.1|849763_850618_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_002950603.1|850604_851372_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.6	4.5e-27
WP_011681085.1|851382_852303_+	ROK family protein	NA	NA	NA	NA	NA
WP_011225887.1|852370_853210_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	37.6	1.8e-32
WP_046206438.1|853377_855522_+	type I DNA topoisomerase	NA	E3T4K4	Cafeteria_roenbergensis_virus	36.8	3.0e-100
WP_011681087.1|855638_856463_+	membrane protein	NA	NA	NA	NA	NA
WP_011227158.1|856498_857158_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.8	8.1e-25
>prophage 61
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	861368	865271	1861792		Anguillid_herpesvirus(50.0%)	3	NA	NA
WP_002947909.1|861368_861782_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	41.5	4.5e-21
WP_011681089.1|861783_862077_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_011227164.1|863438_865271_+	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	41.0	2.2e-19
>prophage 62
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	869015	872868	1861792		Chrysochromulina_ericina_virus(50.0%)	3	NA	NA
WP_011225905.1|869015_869759_+	arginase family protein	NA	A0A0N9R043	Chrysochromulina_ericina_virus	28.0	8.9e-12
WP_011681092.1|869765_870938_+	MFS transporter	NA	NA	NA	NA	NA
WP_002950643.1|871191_872868_+	acetolactate synthase AlsS	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	25.9	1.6e-32
>prophage 63
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	880144	884327	1861792		Synechococcus_phage(50.0%)	6	NA	NA
WP_011681096.1|880144_881182_+	alcohol dehydrogenase catalytic domain-containing protein	NA	E3SJ82	Synechococcus_phage	25.3	6.6e-13
WP_011225920.1|881595_881775_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023909620.1|881853_882303_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002950660.1|882513_882768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011681097.1|882764_883136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011681098.1|883562_884327_+	nucleoside phosphorylase	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	69.4	3.4e-59
>prophage 64
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	887996	892575	1861792		Acanthocystis_turfacea_Chlorella_virus(50.0%)	5	NA	NA
WP_011681101.1|887996_889655_-	fibronectin/fibrinogen-binding protein	NA	M1I0S4	Acanthocystis_turfacea_Chlorella_virus	40.8	1.6e-08
WP_011681102.1|889953_890934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011681103.1|891239_891725_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_011681104.1|891728_891920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011681105.1|892356_892575_+	hypothetical protein	NA	A3F673	Streptococcus_phage	55.2	4.4e-12
>prophage 65
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	907346	908798	1861792		Acinetobacter_phage(100.0%)	1	NA	NA
WP_014621555.1|907346_908798_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.2	6.9e-77
>prophage 66
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	916083	918396	1861792		Bacillus_phage(100.0%)	1	NA	NA
WP_011681124.1|916083_918396_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	1.4e-127
>prophage 67
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	924471	925392	1861792		Indivirus(100.0%)	1	NA	NA
WP_011681127.1|924471_925392_+	bifunctional riboflavin kinase/FAD synthetase	NA	A0A1V0SD03	Indivirus	36.0	1.1e-06
>prophage 68
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	928414	941681	1861792		Bacillus_virus(33.33%)	10	NA	NA
WP_002950736.1|928414_929290_+	phosphate ABC transporter substrate-binding protein PstS family protein	NA	A0A222YW41	Synechococcus_phage	26.7	5.2e-11
WP_011225969.1|929292_930207_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_002952978.1|930196_931081_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_011681132.1|931091_931895_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.2	6.4e-16
WP_011681133.1|931907_932666_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.5	3.8e-18
WP_002950747.1|932693_933347_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_011225973.1|933480_936021_+	M1 family metallopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	27.4	1.1e-66
WP_014608300.1|936182_937253_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_011681136.1|937477_938467_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	29.2	3.3e-14
WP_011681138.1|939416_941681_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.9	5.1e-10
>prophage 69
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	950475	951231	1861792		Bacillus_virus(100.0%)	1	NA	NA
WP_011225987.1|950475_951231_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	26.5	4.1e-12
>prophage 70
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	969985	970639	1861792		Pandoravirus(100.0%)	1	NA	NA
WP_046206443.1|969985_970639_-	uracil-DNA glycosylase	NA	S4VZ65	Pandoravirus	44.3	3.4e-47
>prophage 71
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	973803	975381	1861792		Bathycoccus_sp._RCC1105_virus(100.0%)	1	NA	NA
WP_011681158.1|973803_975381_-	AarF/ABC1/UbiB kinase family protein	NA	E5EQY1	Bathycoccus_sp._RCC1105_virus	29.0	1.3e-41
>prophage 72
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	981171	982282	1861792	transposase	Streptococcus_phage(100.0%)	3	NA	NA
WP_144406660.1|981171_981675_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	52.7	6.8e-40
WP_144406662.1|981652_981739_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_046206446.1|981778_982282_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	59.0	2.4e-45
>prophage 73
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	985772	988288	1861792	transposase	Catovirus(50.0%)	2	NA	NA
WP_046206449.1|985772_986738_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	44.6	1.1e-09
WP_144406661.1|987607_988288_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	82.3	1.4e-107
>prophage 74
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1000693	1004337	1861792		Streptococcus_phage(100.0%)	4	NA	NA
WP_046206460.1|1000693_1001434_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	53.5	1.3e-58
WP_046206461.1|1001443_1002136_-	capsular biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	47.2	9.7e-45
WP_046206462.1|1002144_1002876_-	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_046206463.1|1002876_1004337_-	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	52.8	4.5e-116
>prophage 75
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1007693	1008503	1861792		Grouper_iridovirus(100.0%)	1	NA	NA
WP_011681179.1|1007693_1008503_-	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	43.2	4.2e-55
>prophage 76
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1017538	1018069	1861792		Agrobacterium_phage(100.0%)	1	NA	NA
WP_011681186.1|1017538_1018069_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	34.6	1.8e-11
>prophage 77
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1026442	1027135	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_002953094.1|1026442_1027135_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	37.1	8.0e-31
>prophage 78
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1031321	1034006	1861792		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_011681199.1|1031321_1034006_-	calcium-translocating P-type ATPase, PMCA-type	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	28.5	2.5e-72
>prophage 79
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1038333	1042483	1861792		Bacillus_phage(50.0%)	4	NA	NA
WP_011681204.1|1038333_1039146_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	37.2	1.2e-38
WP_011681205.1|1039151_1040492_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	35.7	5.0e-37
WP_011681206.1|1040484_1041192_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.6	1.9e-40
WP_011681207.1|1041715_1042483_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.5	1.8e-36
>prophage 80
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1047675	1048689	1861792		Tupanvirus(100.0%)	1	NA	NA
WP_011681212.1|1047675_1048689_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	50.5	2.0e-91
>prophage 81
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1058822	1063285	1861792		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011681222.1|1058822_1060016_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	64.6	9.3e-136
WP_046206471.1|1060295_1061234_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA	NA
WP_011681224.1|1061220_1061406_-	DUF3272 family protein	NA	NA	NA	NA	NA
WP_002950915.1|1061632_1063285_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.9	1.7e-50
>prophage 82
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1067110	1128197	1861792	transposase,integrase,protease	Streptococcus_phage(20.0%)	63	1067004:1067022	1076110:1076128
1067004:1067022	attL	TTTATTTTCAACCAAATAA	NA	NA	NA	NA
WP_046206472.1|1067110_1068190_+|integrase	tyrosine-type recombinase/integrase	integrase	Q77YW7	Streptococcus_phage	97.8	1.2e-203
WP_002950935.1|1068323_1068671_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014621688.1|1068798_1070025_-	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	54.1	3.4e-101
WP_011226101.1|1070034_1070307_-	chorismate mutase	NA	NA	NA	NA	NA
WP_046206473.1|1070381_1071917_-	ribonuclease HII	NA	NA	NA	NA	NA
WP_011681232.1|1071967_1072411_-	flavodoxin	NA	A7KUZ7	Bacillus_phage	32.6	5.0e-10
WP_011681233.1|1072495_1072867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011226105.1|1072878_1073598_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_046206474.1|1073717_1074500_-	esterase family protein	NA	NA	NA	NA	NA
WP_011681235.1|1074624_1076286_-	ribonuclease J	NA	NA	NA	NA	NA
1076110:1076128	attR	TTTATTTTCAACCAAATAA	NA	NA	NA	NA
WP_002946104.1|1076467_1077226_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.2	1.3e-13
WP_011681236.1|1077222_1078092_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011681237.1|1078101_1079103_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002950961.1|1079238_1079460_-	DUF4649 family protein	NA	NA	NA	NA	NA
WP_011681238.1|1079661_1079871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082306387.1|1082041_1083346_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.3	5.9e-168
WP_011681242.1|1083430_1084933_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_011681243.1|1085002_1086022_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_011681244.1|1086114_1089225_-	DNA polymerase III subunit alpha	NA	A0A1C9LWZ5	Streptomyces_phage	28.5	3.8e-112
WP_002950974.1|1089377_1090163_-	translation factor Sua5	NA	NA	NA	NA	NA
WP_011226115.1|1090259_1090850_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_011681245.1|1090859_1092242_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_011681246.1|1092272_1092554_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_011681247.1|1092558_1093596_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_011681248.1|1093608_1095171_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.2	1.1e-08
WP_011226119.1|1095518_1096211_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_002950994.1|1096465_1097404_+	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	44.0	4.1e-62
WP_011681249.1|1097468_1097669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002950996.1|1097727_1098003_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	69.7	4.9e-24
WP_011681250.1|1098139_1098709_-	YpmS family protein	NA	NA	NA	NA	NA
WP_046206475.1|1098701_1099577_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_011681251.1|1099569_1100406_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	38.0	2.6e-15
WP_002953185.1|1100476_1102147_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_011681252.1|1102155_1102602_-	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011226127.1|1102549_1103416_-	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
WP_011681253.1|1103408_1104281_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.2	2.0e-07
WP_002951008.1|1104280_1104496_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_011226129.1|1104473_1105814_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	34.1	5.7e-41
WP_011681254.1|1106002_1106248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681255.1|1106899_1107544_-	endonuclease III	NA	NA	NA	NA	NA
WP_002947201.1|1107543_1108242_-	DnaD domain-containing protein	NA	Q7Y4K5	Streptococcus_phage	40.0	2.8e-07
WP_011681256.1|1108313_1109258_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
WP_002947203.1|1109428_1109947_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.6	7.8e-31
WP_011681257.1|1110061_1112272_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.4	1.0e-71
WP_011681258.1|1112284_1113052_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011226135.1|1113051_1113981_-	ribonuclease Z	NA	NA	NA	NA	NA
WP_011681259.1|1114012_1114660_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_011681260.1|1114652_1115891_-	GTPase HflX	NA	NA	NA	NA	NA
WP_011681261.1|1116097_1117102_-|transposase	IS5-like element ISSth7 family transposase	transposase	NA	NA	NA	NA
WP_011681262.1|1117229_1118657_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_011681263.1|1119149_1119464_-	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA	NA
WP_011681264.1|1119472_1119811_-	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA	NA
WP_011681265.1|1119807_1120566_-	imidazole glycerol phosphate synthase subunit HisF	NA	A0A1V0SIZ6	Klosneuvirus	22.7	5.2e-07
WP_011681266.1|1120567_1121287_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	A0A2H4UVM0	Bodo_saltans_virus	25.8	3.6e-10
WP_011681267.1|1121335_1121944_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_011681268.1|1121940_1122525_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_011681269.1|1122544_1123828_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_011681270.1|1123824_1124475_-	ATP phosphoribosyltransferase	NA	A0A1V0SIZ6	Klosneuvirus	22.8	9.2e-05
WP_011681271.1|1124467_1125448_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_011681272.1|1125444_1126497_-	histidinol-phosphate transaminase	NA	A0A1X7QHI1	Faustovirus	24.9	3.9e-21
WP_024704253.1|1127190_1127409_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	57.4	5.4e-10
WP_024009948.1|1127694_1128033_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_082245800.1|1128008_1128197_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 83
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1135997	1138935	1861792		Escherichia_phage(66.67%)	3	NA	NA
WP_002947383.1|1135997_1137044_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	2.5e-68
WP_011226149.1|1137472_1138066_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	1.8e-10
WP_011681286.1|1138065_1138935_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	62.5	3.5e-100
>prophage 84
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1151393	1156410	1861792		Mycobacterium_phage(25.0%)	4	NA	NA
WP_011226161.1|1151393_1152113_-	alpha/beta hydrolase	NA	A0A249XTE1	Mycobacterium_phage	33.9	1.1e-06
WP_011681294.1|1152638_1154558_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	1.2e-52
WP_002946476.1|1154594_1155230_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.2	4.9e-35
WP_011681295.1|1155327_1156410_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.5	4.3e-31
>prophage 85
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1165924	1170595	1861792	transposase	Enterococcus_phage(75.0%)	4	NA	NA
WP_003096895.1|1165924_1166149_+	glutaredoxin-like protein NrdH	NA	V5USF1	Enterococcus_phage	42.5	2.5e-10
WP_011226168.1|1166235_1168395_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.2	2.5e-264
WP_002946459.1|1168553_1169516_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	69.0	3.7e-127
WP_080998433.1|1170130_1170595_+|transposase	transposase	transposase	Q9JMN8	Wolbachia_phage	33.0	6.4e-08
>prophage 86
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1173609	1185088	1861792		Bacillus_virus(20.0%)	9	NA	NA
WP_011681304.1|1173609_1176063_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.2	1.5e-108
WP_011226177.1|1176281_1177268_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_011681305.1|1177360_1178734_-	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.9	3.4e-09
WP_011681306.1|1179049_1180588_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.4	3.7e-52
WP_011681307.1|1180726_1181257_-	membrane protein	NA	NA	NA	NA	NA
WP_011681308.1|1182105_1182615_-	membrane protein	NA	NA	NA	NA	NA
WP_011681309.1|1182752_1183283_-	DUF5067 domain-containing protein	NA	NA	NA	NA	NA
WP_011681310.1|1183440_1184706_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	53.3	4.0e-113
WP_014608455.1|1184749_1185088_-	hypothetical protein	NA	A0A248SK58	Salicola_phage	37.9	4.3e-06
>prophage 87
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1189063	1190107	1861792	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_011681314.1|1189063_1190107_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.3	2.4e-31
>prophage 88
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1194264	1194954	1861792		Acanthamoeba_polyphaga_lentillevirus(100.0%)	1	NA	NA
WP_011681316.1|1194264_1194954_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	32.9	2.5e-24
>prophage 89
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1198588	1199101	1861792		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_011681320.1|1198588_1199101_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	48.1	8.0e-36
>prophage 90
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1213022	1213904	1861792		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011681333.1|1213022_1213904_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	1.2e-18
>prophage 91
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1220022	1220379	1861792		Citrobacter_phage(100.0%)	1	NA	NA
WP_011681340.1|1220022_1220379_-	NUDIX hydrolase	NA	A0A0A0YVI0	Citrobacter_phage	46.6	3.0e-05
>prophage 92
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1225884	1226643	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_011681347.1|1225884_1226643_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	1.0e-26
>prophage 93
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1245080	1247057	1861792		Staphylococcus_phage(50.0%)	2	NA	NA
WP_024704291.1|1245080_1245923_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.5	1.6e-57
WP_046206482.1|1246055_1247057_-	UDP-glucose 4-epimerase GalE	NA	A0A2D2W2J1	Stenotrophomonas_phage	30.3	5.2e-31
>prophage 94
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1251644	1253416	1861792		Streptococcus_phage(100.0%)	2	NA	NA
WP_011681370.1|1251644_1252004_-	hypothetical protein	NA	A0A1B0RXA8	Streptococcus_phage	49.6	7.5e-25
WP_014608504.1|1252000_1253416_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	73.0	1.5e-201
>prophage 95
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1261525	1262200	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_011681376.1|1261525_1262200_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	1.3e-30
>prophage 96
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1269445	1280563	1861792	transposase	Bacillus_phage(25.0%)	4	NA	NA
WP_095559508.1|1269445_1270785_-|transposase	IS3-like element ISSth6 family transposase	transposase	A0A1B1P773	Bacillus_phage	51.5	3.3e-65
WP_046206484.1|1272243_1275423_-	SMC family ATPase	NA	E3SMW4	Prochlorococcus_phage	27.2	8.2e-06
WP_014608518.1|1275419_1276628_-	exonuclease SbcCD subunit D	NA	D9J0R3	Brochothrix_phage	22.3	5.3e-06
WP_011226267.1|1277482_1280563_-	DUF4981 domain-containing protein	NA	L0N6M2	Herpes_simplex_virus	32.5	1.3e-144
>prophage 97
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1283689	1284691	1861792		Tupanvirus(100.0%)	1	NA	NA
WP_011681394.1|1283689_1284691_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.0	8.0e-48
>prophage 98
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1289107	1291933	1861792	transposase	Bacillus_phage(50.0%)	3	NA	NA
WP_014608522.1|1289107_1289299_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.0	1.3e-07
WP_004197624.1|1289320_1289509_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002951370.1|1291651_1291933_+	ATP-binding cassette domain-containing protein	NA	M1IC18	Acanthocystis_turfacea_Chlorella_virus	29.1	5.2e-05
>prophage 99
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1297105	1300671	1861792		Mycobacterium_phage(50.0%)	2	NA	NA
WP_011681401.1|1297105_1299520_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	50.9	4.7e-86
WP_011226284.1|1299672_1300671_-	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	48.4	5.4e-28
>prophage 100
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1305969	1307841	1861792		Feldmannia_species_virus(100.0%)	1	NA	NA
WP_046206487.1|1305969_1307841_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	B5LWE2	Feldmannia_species_virus	29.9	1.4e-21
>prophage 101
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1313760	1314390	1861792		Pandoravirus(100.0%)	1	NA	NA
WP_011681409.1|1313760_1314390_-	guanylate kinase	NA	S4VT50	Pandoravirus	44.2	3.2e-10
>prophage 102
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1318196	1321753	1861792		Organic_Lake_phycodnavirus(33.33%)	4	NA	NA
WP_011226301.1|1318196_1318895_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	26.2	8.1e-07
WP_011681414.1|1318906_1319692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011681415.1|1319745_1320675_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	2.2e-20
WP_011226304.1|1320667_1321753_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.4	5.1e-16
>prophage 103
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1330066	1331915	1861792	transposase	Shigella_phage(50.0%)	3	NA	NA
WP_095559415.1|1330066_1331213_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_014608546.1|1331426_1331597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608547.1|1331609_1331915_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	2.2e-09
>prophage 104
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1336217	1341714	1861792		Bodo_saltans_virus(25.0%)	6	NA	NA
WP_046206490.1|1336217_1337114_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.5	4.2e-08
WP_014608552.1|1337110_1337947_-	NAD kinase	NA	NA	NA	NA	NA
WP_011681427.1|1337918_1338593_-	GTP pyrophosphokinase family protein	NA	F8K9M7	Nitrososphaera_phage	27.7	9.9e-10
WP_002951444.1|1338688_1339264_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_002951446.1|1339626_1340598_+	ribose-phosphate diphosphokinase	NA	A0A2K9L8D8	Tupanvirus	34.8	3.8e-39
WP_014608554.1|1340601_1341714_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	30.8	2.7e-36
>prophage 105
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1349426	1350629	1861792		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
WP_011681436.1|1349426_1350629_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	23.0	3.4e-13
>prophage 106
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1358816	1365302	1861792		Escherichia_phage(25.0%)	6	NA	NA
WP_011681446.1|1358816_1359668_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.6	1.2e-25
WP_011681447.1|1359740_1361048_-	DUF2142 domain-containing protein	NA	NA	NA	NA	NA
WP_011227439.1|1361052_1361979_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	51.1	1.6e-82
WP_002891474.1|1361988_1362324_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_011227440.1|1362377_1363487_-	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	37.9	4.5e-36
WP_011681448.1|1363490_1365302_-	DNA primase	NA	A0A1S5RFD7	Helicobacter_phage	31.5	3.1e-50
>prophage 107
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1376737	1377478	1861792		Planktothrix_phage(100.0%)	1	NA	NA
WP_011681459.1|1376737_1377478_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.9	5.7e-35
>prophage 108
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1394126	1401867	1861792		Streptococcus_phage(80.0%)	8	NA	NA
WP_011226366.1|1394126_1396079_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	45.7	9.8e-143
WP_011226367.1|1396079_1396685_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_011681473.1|1396725_1397421_-	LrgB family protein	NA	NA	NA	NA	NA
WP_011681474.1|1397413_1397788_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_002951532.1|1398067_1398421_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	64.1	2.6e-38
WP_011227454.1|1399006_1400185_-	3-phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	79.3	1.6e-177
WP_011681475.1|1400203_1400761_-	GNAT family acetyltransferase	NA	M1PSC3	Streptococcus_phage	57.3	1.3e-52
WP_011227455.1|1400772_1401867_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	81.5	7.4e-172
>prophage 109
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1407115	1408270	1861792		Mycoplasma_phage(100.0%)	1	NA	NA
WP_002953381.1|1407115_1408270_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	41.7	2.0e-34
>prophage 110
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1411956	1413339	1861792		Pandoravirus(50.0%)	2	NA	NA
WP_023909858.1|1411956_1412757_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	33.1	2.1e-19
WP_011226385.1|1412775_1413339_-	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.9	1.6e-45
>prophage 111
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1419808	1425679	1861792		Streptococcus_phage(25.0%)	5	NA	NA
WP_011681485.1|1419808_1420636_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	81.3	8.4e-128
WP_002944734.1|1420709_1421189_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_004196827.1|1422137_1423151_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	26.3	6.2e-16
WP_024703971.1|1423160_1425119_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	37.3	4.9e-110
WP_014608608.1|1425169_1425679_-	queuosine transporter QueT	NA	E7DN70	Pneumococcus_phage	37.2	3.0e-11
>prophage 112
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1428913	1433113	1861792		Planktothrix_phage(50.0%)	3	NA	NA
WP_014608611.1|1428913_1429459_-	GNAT family N-acetyltransferase	NA	G9BWD5	Planktothrix_phage	30.4	6.1e-10
WP_014608612.1|1429524_1430787_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_046206493.1|1430872_1433113_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.8	8.0e-56
>prophage 113
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1436544	1440446	1861792		Invertebrate_iridovirus(33.33%)	4	NA	NA
WP_011226404.1|1436544_1436814_+	GIY-YIG nuclease family protein	NA	W8W2G4	Invertebrate_iridovirus	39.2	5.3e-07
WP_011681499.1|1437369_1438953_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	38.7	4.6e-58
WP_011226406.1|1439143_1440052_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_011681500.1|1440065_1440446_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	37.8	1.7e-14
>prophage 114
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1444176	1445721	1861792		Streptococcus_phage(100.0%)	1	NA	NA
WP_011681503.1|1444176_1445721_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	25.8	4.1e-35
>prophage 115
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1450676	1458327	1861792	transposase	Planktothrix_phage(33.33%)	7	NA	NA
WP_004197293.1|1450676_1451435_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	1.7e-34
WP_011681510.1|1451436_1452114_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011681511.1|1452073_1452754_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002948672.1|1453279_1454536_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.4	1.4e-126
WP_011681512.1|1454614_1455661_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_004197587.1|1455821_1456025_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_011681513.1|1456098_1458327_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	32.6	1.1e-92
>prophage 116
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1461465	1472124	1861792	transposase	Acinetobacter_phage(42.86%)	11	NA	NA
WP_011681518.1|1461465_1462233_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.2	6.3e-29
WP_011681519.1|1462229_1463234_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.3	2.1e-48
WP_011681520.1|1463324_1463891_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	45.1	3.8e-39
WP_011681521.1|1463887_1465243_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	29.9	8.0e-35
WP_011681522.1|1465319_1465601_-	chorismate mutase	NA	NA	NA	NA	NA
WP_014621725.1|1466146_1467451_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.0	1.3e-167
WP_023909885.1|1467619_1467970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681524.1|1468051_1470412_-	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.4	1.3e-35
WP_011681525.1|1470672_1471068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002884818.1|1471376_1471676_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_011226431.1|1471833_1472124_-	hypothetical protein	NA	A0A0N7GFG6	Staphylococcus_phage	53.0	8.2e-22
>prophage 117
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1477153	1486696	1861792	tRNA,protease	Staphylococcus_phage(25.0%)	9	NA	NA
WP_002951656.1|1477153_1478335_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	49.5	3.9e-17
WP_046206494.1|1478555_1479197_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_002951667.1|1479206_1479998_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_046206495.1|1480055_1481093_-	multidrug ABC transporter permease	NA	NA	NA	NA	NA
WP_002951673.1|1481089_1481821_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.8	8.5e-23
WP_011681530.1|1481885_1482305_+	HIT family protein	NA	D7NW73	Streptomyces_phage	33.7	1.8e-06
WP_011681531.1|1482301_1482601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011681533.1|1483399_1484035_-	DUF4230 domain-containing protein	NA	NA	NA	NA	NA
WP_046206496.1|1484596_1486696_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.5	7.1e-123
>prophage 118
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1490536	1491169	1861792		Bacillus_virus(100.0%)	1	NA	NA
WP_002951698.1|1490536_1491169_-	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	31.4	1.4e-18
>prophage 119
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1495082	1554559	1861792	bacteriocin,tRNA,protease	Bacillus_virus(20.0%)	60	NA	NA
WP_011681541.1|1495082_1496525_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_011681542.1|1496524_1497991_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002884769.1|1497990_1498293_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_041827766.1|1498432_1498687_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_041827768.1|1500818_1501328_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_011681545.1|1501339_1502188_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002946999.1|1502311_1502863_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.3	2.6e-24
WP_002951720.1|1502925_1503711_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_002951721.1|1503970_1505185_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002946987.1|1505539_1505992_+	universal stress protein	NA	NA	NA	NA	NA
WP_011681547.1|1507048_1507423_-	membrane protein	NA	NA	NA	NA	NA
WP_002946980.1|1507634_1508435_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	31.8	2.9e-24
WP_157821721.1|1508622_1508751_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002951727.1|1509430_1510762_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_011226459.1|1510875_1511658_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	5.9e-14
WP_011681548.1|1512279_1514346_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_011226461.1|1514354_1514597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011226462.1|1514593_1515142_-	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	44.1	3.5e-37
WP_011226463.1|1515138_1516083_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	48.3	8.6e-36
WP_014608650.1|1516167_1517205_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_011681550.1|1517221_1517719_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	28.8	1.1e-13
WP_011226466.1|1517752_1518301_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011226467.1|1518442_1519363_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.0	4.7e-87
WP_002951743.1|1519428_1519653_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_011681551.1|1519867_1520611_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.3e-30
WP_011681552.1|1520610_1521534_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011681553.1|1521744_1522575_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002947030.1|1523034_1523268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681554.1|1523565_1524669_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011226473.1|1524947_1527257_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.4	8.1e-112
WP_011681555.1|1527523_1528306_+	carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_014608655.1|1528356_1528809_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014621914.1|1529159_1529465_-	type I restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011681558.1|1530442_1531198_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_011681559.1|1531194_1531845_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.5	1.1e-21
WP_002951776.1|1532047_1533004_-	serine hydrolase	NA	NA	NA	NA	NA
WP_011681560.1|1533003_1533759_-	peptidase	NA	NA	NA	NA	NA
WP_014608659.1|1534040_1534403_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002951781.1|1534489_1535353_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	34.4	3.9e-27
WP_011681561.1|1535473_1537741_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_002951783.1|1537820_1538201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002945924.1|1538325_1538589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197070.1|1538910_1539207_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011681562.1|1539371_1539578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681563.1|1539608_1540298_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_011681564.1|1540484_1540664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003094909.1|1540692_1541085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681565.1|1541096_1541336_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011226490.1|1541586_1541988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681567.1|1542581_1542797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011226494.1|1543010_1543241_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011681569.1|1543596_1543797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681570.1|1543815_1543992_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011681571.1|1544242_1544980_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	21.3	5.4e-09
WP_011681572.1|1544973_1546314_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_011681573.1|1546331_1546493_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011681574.1|1546507_1547875_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_041827772.1|1547890_1550044_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.1e-41
WP_011681577.1|1551057_1552803_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.6	1.8e-55
WP_041827774.1|1552795_1554559_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	28.6	5.7e-49
>prophage 120
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1559835	1561179	1861792		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_011681583.1|1559835_1561179_-	DEAD/DEAH box helicase	NA	A0A1B1IS59	uncultured_Mediterranean_phage	30.8	1.1e-44
>prophage 121
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1568820	1578376	1861792		Streptococcus_phage(50.0%)	5	NA	NA
WP_011681590.1|1568820_1570071_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	53.5	5.2e-113
WP_011681591.1|1570072_1570876_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	36.3	4.9e-40
WP_011681592.1|1570996_1572586_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681593.1|1572588_1573320_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.9	5.1e-28
WP_011681595.1|1574722_1578376_-	helicase-exonuclease AddAB subunit AddA	NA	A0A068EQC7	Bacillus_phage	22.8	4.8e-18
>prophage 122
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1585764	1601996	1861792	transposase	Geobacillus_virus(14.29%)	14	NA	NA
WP_011681600.1|1585764_1587150_-	Cof-type HAD-IIB family hydrolase	NA	A0A0H3UZF4	Geobacillus_virus	39.5	3.2e-23
WP_024704001.1|1587223_1588189_+	asparaginase	NA	NA	NA	NA	NA
WP_011681602.1|1588192_1588390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082306387.1|1588410_1589715_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.3	5.9e-168
WP_011681604.1|1589903_1590773_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011681605.1|1590940_1592530_+	ABC transporter ATP-binding protein	NA	A0A2H4UU96	Bodo_saltans_virus	27.0	1.8e-14
WP_002884695.1|1592668_1592881_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011681606.1|1592890_1593499_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
WP_011681608.1|1594438_1595419_-	abortive infection protein	NA	A0A059NT88	Lactococcus_phage	42.1	9.2e-65
WP_011681610.1|1596201_1598220_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_011681611.1|1598348_1599452_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	28.1	4.1e-21
WP_011681612.1|1599472_1599832_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_002947699.1|1599835_1600867_-	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	35.0	7.7e-46
WP_011681613.1|1600964_1601996_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A067ZJG7	Escherichia_phage	35.0	1.7e-45
>prophage 123
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1610787	1620283	1861792		Enterobacteria_phage(25.0%)	12	NA	NA
WP_011681619.1|1610787_1611753_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.0	5.4e-25
WP_002951890.1|1611842_1612277_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_002951891.1|1612269_1612659_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_011227545.1|1612729_1613290_-	elongation factor P	NA	NA	NA	NA	NA
WP_002951893.1|1613402_1613858_-	hypothetical protein	NA	F8WPT6	Bacillus_phage	52.8	8.1e-32
WP_011681620.1|1613876_1614938_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_002951896.1|1615126_1615555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100284870.1|1615599_1616193_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_024704004.1|1616161_1616551_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	40.7	3.0e-19
WP_002946571.1|1616738_1616930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002946573.1|1617091_1617364_-	DUF3923 family protein	NA	NA	NA	NA	NA
WP_011681621.1|1617457_1620283_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.8	4.7e-311
>prophage 124
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1623682	1645168	1861792	tRNA	Bacillus_phage(28.57%)	21	NA	NA
WP_002951905.1|1623682_1624201_-	single-stranded DNA-binding protein	NA	A0A2H4J1H8	uncultured_Caudovirales_phage	72.7	2.7e-63
WP_011681624.1|1624212_1624503_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_011681625.1|1624721_1625675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011681626.1|1626214_1627366_+	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	30.7	2.4e-24
WP_024010075.1|1627692_1627944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681629.1|1628046_1628274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681631.1|1628437_1628722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681632.1|1629191_1631831_-	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	32.4	1.8e-67
WP_011681633.1|1632037_1634389_+	endonuclease MutS2	NA	A0A2P0VN50	Tetraselmis_virus	29.6	1.2e-09
WP_002947866.1|1634489_1635032_-	CvpA family protein	NA	NA	NA	NA	NA
WP_002947863.1|1635028_1635346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681634.1|1635659_1636550_+	ribonuclease HIII	NA	NA	NA	NA	NA
WP_002947854.1|1636568_1637192_+	signal peptidase I	NA	NA	NA	NA	NA
WP_011681635.1|1637253_1639758_+	ATP-dependent RecD-like DNA helicase	NA	A0A218KCE8	Bacillus_phage	27.2	9.2e-53
WP_011681636.1|1639812_1640139_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_011681637.1|1640125_1640821_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_011681638.1|1640872_1641886_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.1	1.7e-58
WP_011226561.1|1641885_1642341_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_011681639.1|1642300_1642987_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002947111.1|1643250_1643481_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_011681640.1|1643485_1645168_+	ribonuclease J	NA	S0A5H7	Cellulophaga_phage	30.6	3.0e-07
>prophage 125
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1655304	1659550	1861792		Streptococcus_phage(100.0%)	4	NA	NA
WP_011226574.1|1655304_1657386_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	29.0	2.7e-66
WP_011226575.1|1657606_1658077_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_002884809.1|1658095_1658509_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_011681650.1|1658725_1659550_-	pur operon repressor	NA	A0A1X9I6E2	Streptococcus_phage	29.3	4.0e-05
>prophage 126
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1667163	1668456	1861792		Streptomyces_phage(50.0%)	2	NA	NA
WP_011226584.1|1667163_1667478_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	46.2	5.1e-17
WP_011226585.1|1667673_1668456_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	36.9	5.1e-26
>prophage 127
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1675075	1676218	1861792	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_011681659.1|1675075_1676218_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.4	2.7e-84
>prophage 128
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1684361	1685816	1861792	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_002953532.1|1684361_1685816_-|tRNA	glutamate--tRNA ligase	tRNA	A0A2K9L481	Tupanvirus	30.3	6.9e-08
>prophage 129
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1692964	1693411	1861792		Clostridium_botulinum_C_phage(100.0%)	1	NA	NA
WP_002947069.1|1692964_1693411_-	dUTP diphosphatase	NA	Q332E8	Clostridium_botulinum_C_phage	50.7	8.5e-34
>prophage 130
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1698142	1699057	1861792		Bacillus_phage(100.0%)	1	NA	NA
WP_002953557.1|1698142_1699057_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.2	4.1e-75
>prophage 131
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1706296	1706689	1861792		Streptococcus_phage(100.0%)	1	NA	NA
WP_011226610.1|1706296_1706689_-	single-stranded DNA-binding protein	NA	A1EAD1	Streptococcus_phage	49.2	8.8e-27
>prophage 132
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1710716	1713659	1861792	protease	Streptococcus_phage(50.0%)	6	NA	NA
WP_011226616.1|1710716_1711487_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	36.1	2.8e-32
WP_011681679.1|1711516_1712179_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_011681680.1|1712275_1712719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608739.1|1712792_1713218_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_011681681.1|1713174_1713450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681682.1|1713461_1713659_-	helix-turn-helix transcriptional regulator	NA	A0A1L2BY74	Clostridium_phage	36.9	8.1e-05
>prophage 133
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1720374	1735243	1861792	tRNA	Phaeocystis_globosa_virus(25.0%)	7	NA	NA
WP_011226631.1|1720374_1724013_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	25.6	1.6e-66
WP_046206504.1|1724113_1727707_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	23.8	2.0e-48
WP_011681692.1|1728069_1730493_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_011681693.1|1730593_1731850_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	41.4	9.6e-75
WP_002952054.1|1731975_1732998_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_011226635.1|1733073_1733550_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_011681694.1|1733542_1735243_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	33.3	3.4e-67
>prophage 134
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1745557	1747453	1861792		Klosneuvirus(100.0%)	1	NA	NA
WP_011681701.1|1745557_1747453_-	endopeptidase	NA	A0A1V0SHG2	Klosneuvirus	28.6	2.6e-71
>prophage 135
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1752241	1752922	1861792	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_011681704.1|1752241_1752922_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.0e-126
>prophage 136
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1759838	1760588	1861792	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_080998441.1|1759838_1760588_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.2	2.5e-38
>prophage 137
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1775416	1784015	1861792		uncultured_virus(25.0%)	7	NA	NA
WP_002948618.1|1775416_1776418_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	30.8	2.6e-06
WP_011227608.1|1776500_1778324_-	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	27.7	2.8e-22
WP_002948620.1|1778320_1778731_-	membrane protein	NA	NA	NA	NA	NA
WP_011681719.1|1778727_1779162_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_011681720.1|1779444_1780737_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	37.4	2.5e-70
WP_011227609.1|1781797_1782967_-	MFS transporter	NA	NA	NA	NA	NA
WP_011227610.1|1782959_1784015_-	ThiF family adenylyltransferase	NA	A0A1V0SIK8	Klosneuvirus	28.5	4.5e-09
>prophage 138
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1789214	1790783	1861792		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_002948640.1|1789214_1790783_+	ABC transporter ATP-binding protein	NA	F2Y352	Organic_Lake_phycodnavirus	26.8	8.2e-15
>prophage 139
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1793828	1816019	1861792	transposase,tRNA,integrase	Streptococcus_phage(27.27%)	20	1783584:1783598	1801005:1801019
1783584:1783598	attL	ACCGTCGATAAGAAC	NA	NA	NA	NA
WP_002948651.1|1793828_1795370_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	32.8	1.5e-13
WP_011681725.1|1795773_1796286_-	helix-turn-helix transcriptional regulator	NA	A0A139ZPJ2	Marinitoga_camini_virus	40.2	1.5e-05
WP_000369785.1|1797683_1797872_+	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_011681729.1|1797873_1799013_+|integrase	site-specific integrase	integrase	Q77YW7	Streptococcus_phage	28.6	1.8e-35
WP_002952183.1|1799455_1800724_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	45.5	8.4e-95
WP_002952184.1|1800893_1801082_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
1801005:1801019	attR	GTTCTTATCGACGGT	NA	NA	NA	NA
WP_011681731.1|1801208_1801475_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_011681732.1|1801474_1801894_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_011681733.1|1802002_1802308_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_002948672.1|1802402_1803659_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.4	1.4e-126
WP_011681734.1|1803939_1805586_+	membrane protein	NA	NA	NA	NA	NA
WP_011681735.1|1805695_1807900_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.0	2.4e-278
WP_011681736.1|1808132_1808633_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011681737.1|1808637_1809243_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.7	1.4e-52
WP_081004985.1|1809264_1810032_-	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	40.0	9.4e-41
WP_011681739.1|1810091_1811033_-	YitT family protein	NA	NA	NA	NA	NA
WP_046206506.1|1811025_1812777_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	28.2	8.0e-11
WP_002946366.1|1812886_1813309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681741.1|1813316_1814597_-|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	25.1	1.2e-24
WP_024010109.1|1815791_1816019_-	methionine synthase	NA	A0A218MNE0	uncultured_virus	45.7	9.6e-10
>prophage 140
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1830416	1831778	1861792		Streptococcus_phage(100.0%)	1	NA	NA
WP_002952261.1|1830416_1831778_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.3	1.9e-153
>prophage 141
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1839572	1855144	1861792	tRNA	Streptococcus_phage(30.0%)	15	NA	NA
WP_011681757.1|1839572_1840202_-	hypothetical protein	NA	Q4Z8Z7	Staphylococcus_phage	45.2	3.6e-22
WP_011226701.1|1840441_1840996_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	42.2	3.1e-25
WP_011226702.1|1841299_1842094_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_002947774.1|1842086_1842929_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.2	2.1e-17
WP_011681758.1|1842904_1843735_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	5.8e-20
WP_011681759.1|1843747_1844290_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_011681760.1|1844302_1845160_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011681761.1|1845218_1846496_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	28.3	9.6e-22
WP_011681762.1|1846497_1847748_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	39.9	3.9e-92
WP_002947785.1|1847825_1848203_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	1.7e-22
WP_002947786.1|1848205_1849306_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_011227627.1|1849474_1850956_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	6.8e-96
WP_011681763.1|1851132_1852155_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011681764.1|1852582_1853455_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.6	4.8e-33
WP_011226709.1|1853521_1855144_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.3	5.4e-46
>prophage 142
NZ_CP011217	Streptococcus thermophilus strain SMQ-301 chromosome, complete genome	1861792	1859726	1860962	1861792		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_011681767.1|1859726_1860962_+	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	26.7	2.2e-15
