assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	1	420137-420238	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP011147.1_411696_411906_-,NA|128aa|up_6|NZ_CP011147.1_412730_413114_-,NA|33aa|up_0|NZ_CP011147.1_419361_419460_+,NA|221aa|down_1|NZ_CP011147.1_421328_421991_-,NA|179aa|down_7|NZ_CP011147.1_428082_428619_-	NA|84aa|up_9|NZ_CP011147.1_411406_411658_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP011147.1_411696_411906_-	NA	NA|194aa|up_7|NZ_CP011147.1_412083_412665_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP011147.1_412730_413114_-	NA	NA|209aa|up_5|NZ_CP011147.1_413383_414010_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP011147.1_414453_415977_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP011147.1_415992_416562_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP011147.1_417053_417809_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP011147.1_417888_419277_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP011147.1_419361_419460_+	NA	NA|319aa|down_0|NZ_CP011147.1_420254_421211_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP011147.1_421328_421991_-	NA	NA|136aa|down_2|NZ_CP011147.1_422133_422541_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP011147.1_423053_423632_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP011147.1_423631_424900_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP011147.1_424937_426404_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP011147.1_426428_427970_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP011147.1_428082_428619_-	NA	NA|235aa|down_8|NZ_CP011147.1_429010_429715_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP011147.1_430113_430386_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	2	770205-770287	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NZ_CP011147.1_756818_757025_+,NA|34aa|down_1|NZ_CP011147.1_771942_772044_+,NA|52aa|down_8|NZ_CP011147.1_779890_780046_+	NA|69aa|up_9|NZ_CP011147.1_756818_757025_+	NA	NA|237aa|up_8|NZ_CP011147.1_757112_757823_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP011147.1_757806_758811_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP011147.1_759284_761225_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP011147.1_761494_763378_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP011147.1_763389_765171_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP011147.1_765392_766370_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP011147.1_766362_767877_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP011147.1_768116_769175_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP011147.1_769513_770056_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP011147.1_770934_771852_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP011147.1_771942_772044_+	NA	NA|502aa|down_2|NZ_CP011147.1_772121_773627_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP011147.1_773967_774468_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP011147.1_774487_775354_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP011147.1_776154_776553_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP011147.1_776515_778621_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP011147.1_778738_779710_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP011147.1_779890_780046_+	NA	NA|324aa|down_9|NZ_CP011147.1_780084_781056_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	3	811152-811230	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP011147.1_802028_802133_+,NA|36aa|up_5|NZ_CP011147.1_803565_803673_+,NA	NA|191aa|up_9|NZ_CP011147.1_798469_799042_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP011147.1_799455_801987_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP011147.1_802028_802133_+	NA	NA|370aa|up_6|NZ_CP011147.1_802301_803412_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP011147.1_803565_803673_+	NA	NA|280aa|up_4|NZ_CP011147.1_803820_804660_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP011147.1_804833_805484_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP011147.1_805480_805717_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP011147.1_805985_807971_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP011147.1_807978_810825_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP011147.1_811488_812421_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP011147.1_812426_813266_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP011147.1_813273_813759_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP011147.1_813766_815206_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP011147.1_815272_816208_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP011147.1_817093_818005_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP011147.1_818001_818997_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP011147.1_819107_820052_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP011147.1_820615_821203_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP011147.1_821445_822348_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	4	816607-816876	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	36	816643-816664|816643-816664|816643-816664|816643-816664|816643-816664|816643-816664|816643-816664|816643-816664|816643-816664|816643-816664|816643-816664|816701-816723|816701-816723|816701-816723|816701-816723|816701-816723|816701-816723|816701-816723|816760-816781|816760-816781|816760-816781|816760-816781|816760-816781|816760-816781|816760-816781|816760-816781|816760-816781|816760-816781|816760-816781|816818-816840|816818-816840|816818-816840|816818-816840|816818-816840|816818-816840|816818-816840	NZ_CP011147.1_182046-182025|NZ_CP011147.1_305122-305101|NZ_CP011147.1_643158-643137|NZ_CP011147.1_769246-769267|NZ_CP011147.1_859963-859984|NZ_CP011147.1_1334525-1334504|NZ_CP011147.1_1600397-1600418|NZ_CP011147.1_1614952-1614931|NZ_CP011147.1_2021466-2021487|NZ_CP011147.1_930193-930214|NZ_CP011147.1_1634659-1634680|NZ_CP011147.1_770218-770196|NZ_CP011147.1_770496-770474|NZ_CP011147.1_1334642-1334620|NZ_CP011147.1_2021524-2021546|NZ_CP011147.1_2360697-2360719|NZ_CP011147.1_1422940-1422962|NZ_CP011147.1_2122427-2122449|NZ_CP011147.1_182046-182025|NZ_CP011147.1_305122-305101|NZ_CP011147.1_643158-643137|NZ_CP011147.1_769246-769267|NZ_CP011147.1_859963-859984|NZ_CP011147.1_1334525-1334504|NZ_CP011147.1_1600397-1600418|NZ_CP011147.1_1614952-1614931|NZ_CP011147.1_2021466-2021487|NZ_CP011147.1_930193-930214|NZ_CP011147.1_1634659-1634680|NZ_CP011147.1_770218-770196|NZ_CP011147.1_770496-770474|NZ_CP011147.1_1334642-1334620|NZ_CP011147.1_2021524-2021546|NZ_CP011147.1_2360697-2360719|NZ_CP011147.1_1422940-1422962|NZ_CP011147.1_2122427-2122449	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP011147.1_803820_804660_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP011147.1_804833_805484_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP011147.1_805480_805717_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP011147.1_805985_807971_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP011147.1_807978_810825_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP011147.1_811488_812421_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP011147.1_812426_813266_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP011147.1_813273_813759_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP011147.1_813766_815206_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP011147.1_815272_816208_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP011147.1_817093_818005_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP011147.1_818001_818997_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP011147.1_819107_820052_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP011147.1_820615_821203_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP011147.1_821445_822348_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP011147.1_823050_823680_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP011147.1_824492_825506_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP011147.1_825558_826569_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP011147.1_826707_827898_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP011147.1_828019_828781_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	5	859890-859971	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	859914-859947	NZ_CP011147.1_1334633-1334600	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NZ_CP011147.1_852992_853574_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP011147.1_853646_854264_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP011147.1_854418_854913_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP011147.1_855311_855734_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP011147.1_855881_856598_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP011147.1_856680_857220_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP011147.1_857370_857691_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP011147.1_857834_858191_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP011147.1_858348_858729_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP011147.1_858907_859786_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP011147.1_860582_860969_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP011147.1_860961_861258_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP011147.1_861507_862533_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP011147.1_862525_863221_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP011147.1_863238_864060_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP011147.1_864413_864608_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP011147.1_864841_865693_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP011147.1_866020_866782_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP011147.1_866879_868187_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP011147.1_868292_869543_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	6	1600321-1600405	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1600347-1600379	NZ_CP011147.1_1334633-1334601	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP011147.1_1589530_1590214_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP011147.1_1590457_1590634_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP011147.1_1590926_1592273_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP011147.1_1592279_1593032_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP011147.1_1593033_1593972_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP011147.1_1593975_1595115_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP011147.1_1595250_1597083_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP011147.1_1597151_1597778_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP011147.1_1597809_1598787_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP011147.1_1598887_1600012_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP011147.1_1600577_1602401_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP011147.1_1602746_1602998_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP011147.1_1603042_1604017_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_CP011147.1_1604073_1606275_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP011147.1_1606279_1606741_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP011147.1_1606832_1607519_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP011147.1_1607558_1608275_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP011147.1_1608277_1608631_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP011147.1_1608631_1609216_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP011147.1_1609205_1609775_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	7	1634800-1634878	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTCTGTGTTGGGGCCCCGCCAA	24	1	6	1634824-1634854|1634824-1634854|1634824-1634854|1634824-1634854|1634824-1634854|1634824-1634854	NZ_CP011147.1_182055-182025|NZ_CP011147.1_643167-643137|NZ_CP011147.1_769237-769267|NZ_CP011147.1_859954-859984|NZ_CP011147.1_1600388-1600418|NZ_CP011147.1_1614961-1614931	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|NZ_CP011147.1_1638830_1638977_-,NA|43aa|down_8|NZ_CP011147.1_1642013_1642142_-	NA|208aa|up_9|NZ_CP011147.1_1623421_1624045_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP011147.1_1624044_1625313_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP011147.1_1625324_1626248_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP011147.1_1626250_1626889_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP011147.1_1627173_1627482_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP011147.1_1627496_1627925_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP011147.1_1627928_1628189_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP011147.1_1628251_1630882_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP011147.1_1631224_1633702_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP011147.1_1633703_1634372_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP011147.1_1635007_1636126_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP011147.1_1636126_1637269_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP011147.1_1637580_1638594_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP011147.1_1638830_1638977_-	NA	NA|61aa|down_4|NZ_CP011147.1_1639016_1639199_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP011147.1_1639298_1639721_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP011147.1_1639805_1641080_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP011147.1_1641240_1642014_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP011147.1_1642013_1642142_-	NA	NA|589aa|down_9|NZ_CP011147.1_1642474_1644241_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	8	2122346-2122427	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2122370-2122403|2122370-2122403|2122370-2122403|2122370-2122403|2122370-2122403	NZ_CP011147.1_811151-811184|NZ_CP011147.1_1122891-1122858|NZ_CP011147.1_1726993-1726960|NZ_CP011147.1_1338974-1339007|NZ_CP011147.1_2808923-2808956	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|49aa|up_7|NZ_CP011147.1_2114652_2114799_+,NA|61aa|up_5|NZ_CP011147.1_2115051_2115234_+,NA	NA|239aa|up_9|NZ_CP011147.1_2112996_2113713_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|285aa|up_8|NZ_CP011147.1_2113724_2114579_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|49aa|up_7|NZ_CP011147.1_2114652_2114799_+	NA	NA|62aa|up_6|NZ_CP011147.1_2114795_2114981_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|61aa|up_5|NZ_CP011147.1_2115051_2115234_+	NA	NA|238aa|up_4|NZ_CP011147.1_2115312_2116026_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_3|NZ_CP011147.1_2116216_2117254_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP011147.1_2118372_2119389_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP011147.1_2119410_2120466_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP011147.1_2120901_2122125_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP011147.1_2122568_2123876_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP011147.1_2124415_2126032_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP011147.1_2126107_2126392_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP011147.1_2126566_2127310_+	pfam02517, Abi, CAAX protease self-immunity	NA|394aa|down_4|NZ_CP011147.1_2127334_2128516_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP011147.1_2128712_2129339_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP011147.1_2129699_2130485_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP011147.1_2131084_2131219_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP011147.1_2131454_2132018_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP011147.1_2132020_2132164_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	9	2251332-2251412	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP011147.1_2246206_2246437_-,NA|364aa|up_0|NZ_CP011147.1_2250223_2251315_+,NA|35aa|down_0|NZ_CP011147.1_2251747_2251852_-,NA|53aa|down_1|NZ_CP011147.1_2252531_2252690_+	NA|237aa|up_9|NZ_CP011147.1_2241817_2242528_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP011147.1_2242648_2243092_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP011147.1_2243291_2243705_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP011147.1_2244161_2245535_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP011147.1_2246206_2246437_-	NA	NA|313aa|up_4|NZ_CP011147.1_2246467_2247406_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP011147.1_2247841_2248507_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP011147.1_2248658_2248979_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP011147.1_2248980_2249958_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP011147.1_2250223_2251315_+	NA	NA|35aa|down_0|NZ_CP011147.1_2251747_2251852_-	NA	NA|53aa|down_1|NZ_CP011147.1_2252531_2252690_+	NA	NA|286aa|down_2|NZ_CP011147.1_2253347_2254205_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP011147.1_2254272_2255055_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP011147.1_2255286_2257092_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP011147.1_2257772_2259311_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP011147.1_2259345_2261478_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP011147.1_2261489_2261924_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP011147.1_2261923_2263030_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP011147.1_2263348_2270794_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	10	2263653-2263738	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP011147.1_2250223_2251315_+,NA|35aa|up_8|NZ_CP011147.1_2251747_2251852_-,NA|53aa|up_7|NZ_CP011147.1_2252531_2252690_+,NA	NA|364aa|up_9|NZ_CP011147.1_2250223_2251315_+	NA	NA|35aa|up_8|NZ_CP011147.1_2251747_2251852_-	NA	NA|53aa|up_7|NZ_CP011147.1_2252531_2252690_+	NA	NA|286aa|up_6|NZ_CP011147.1_2253347_2254205_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP011147.1_2254272_2255055_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP011147.1_2255286_2257092_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP011147.1_2257772_2259311_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP011147.1_2259345_2261478_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP011147.1_2261489_2261924_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP011147.1_2261923_2263030_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP011147.1_2271071_2272427_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP011147.1_2272453_2273386_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP011147.1_2273387_2274197_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP011147.1_2274385_2275294_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP011147.1_2281367_2282432_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP011147.1_2282579_2284022_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP011147.1_2284344_2284818_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP011147.1_2284916_2286260_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP011147.1_2286436_2287120_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP011147.1_2287138_2288326_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000969225.1_ASM96922v1	NZ_CP011147	Staphylococcus aureus strain FCFHV36 chromosome, complete genome	11	2371526-2371606	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	14	2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581|2371551-2371581	NZ_CP011147.1_823895-823925|NZ_CP011147.1_823951-823981|NZ_CP011147.1_83382-83412|NZ_CP011147.1_381429-381399|NZ_CP011147.1_643222-643192|NZ_CP011147.1_824007-824037|NZ_CP011147.1_860226-860256|NZ_CP011147.1_1026191-1026221|NZ_CP011147.1_1128489-1128459|NZ_CP011147.1_1334589-1334559|NZ_CP011147.1_1422993-1423023|NZ_CP011147.1_1615015-1614985|NZ_CP011147.1_2360750-2360780|NZ_CP011147.1_2536217-2536247	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP011147.1_2362059_2362224_+,NA|106aa|up_8|NZ_CP011147.1_2362468_2362786_+,NA|84aa|up_5|NZ_CP011147.1_2367907_2368159_+,NA|62aa|up_0|NZ_CP011147.1_2371298_2371484_+,NA	NA|55aa|up_9|NZ_CP011147.1_2362059_2362224_+	NA	NA|106aa|up_8|NZ_CP011147.1_2362468_2362786_+	NA	NA|1056aa|up_7|NZ_CP011147.1_2362969_2366137_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP011147.1_2366253_2367519_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP011147.1_2367907_2368159_+	NA	NA|255aa|up_4|NZ_CP011147.1_2368150_2368915_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP011147.1_2369076_2369517_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP011147.1_2369509_2370721_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP011147.1_2370822_2371173_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP011147.1_2371298_2371484_+	NA	NA|341aa|down_0|NZ_CP011147.1_2371749_2372772_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP011147.1_2372791_2373391_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP011147.1_2373397_2373631_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP011147.1_2373636_2374083_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP011147.1_2374096_2374582_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP011147.1_2374578_2375838_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP011147.1_2375900_2376395_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP011147.1_2376396_2376903_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP011147.1_2376933_2377938_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP011147.1_2378107_2378713_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
