assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000968515.1_ASM96851v1	NZ_CP011134	Escherichia coli VR50 chromosome, complete genome	1	568784-568880	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|454aa|up_9|NZ_CP011134.1_556564_557926_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP011134.1_557982_559284_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP011134.1_559305_560451_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP011134.1_560678_561464_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP011134.1_561474_562710_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP011134.1_562731_563781_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP011134.1_564097_565765_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP011134.1_565774_567034_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP011134.1_567044_567860_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP011134.1_567856_568750_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP011134.1_568944_570012_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP011134.1_570008_570518_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP011134.1_570635_571358_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP011134.1_571360_571855_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP011134.1_572028_573414_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP011134.1_573449_573971_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP011134.1_574078_574291_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP011134.1_574292_575159_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP011134.1_575629_576172_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP011134.1_576391_577084_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_000968515.1_ASM96851v1	NZ_CP011134	Escherichia coli VR50 chromosome, complete genome	2	2502627-2502753	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|395aa|up_9|NZ_CP011134.1_2481534_2482719_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP011134.1_2482792_2483569_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP011134.1_2483573_2485223_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|NZ_CP011134.1_2485223_2489738_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP011134.1_2489761_2490385_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP011134.1_2490381_2492070_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP011134.1_2492218_2494846_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP011134.1_2494992_2495715_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP011134.1_2495842_2499595_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP011134.1_2500290_2502576_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP011134.1_2502809_2503940_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP011134.1_2503939_2504194_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|359aa|down_2|NZ_CP011134.1_2505359_2506436_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_3|NZ_CP011134.1_2506440_2507799_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_4|NZ_CP011134.1_2508071_2509700_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_5|NZ_CP011134.1_2509689_2510949_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_6|NZ_CP011134.1_2510945_2512136_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|62aa|down_7|NZ_CP011134.1_2513240_2513426_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_8|NZ_CP011134.1_2513466_2514270_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|430aa|down_9|NZ_CP011134.1_2514287_2515577_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily
GCF_000968515.1_ASM96851v1	NZ_CP011134	Escherichia coli VR50 chromosome, complete genome	3	3037592-3038476	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,11	14	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|254aa|up_9|NZ_CP011134.1_3029403_3030165_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP011134.1_3030145_3031195_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP011134.1_3031191_3031671_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP011134.1_3031670_3032381_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP011134.1_3032399_3032711_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP011134.1_3032904_3033228_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP011134.1_3033277_3033883_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP011134.1_3033882_3035310_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP011134.1_3035311_3036220_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP011134.1_3036471_3037509_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP011134.1_3038581_3038866_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP011134.1_3038867_3039785_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP011134.1_3039800_3040400_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP011134.1_3040386_3041061_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP011134.1_3041063_3042155_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP011134.1_3042167_3042650_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP011134.1_3042642_3044151_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP011134.1_3044565_3047232_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP011134.1_3047590_3048325_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP011134.1_3048399_3050112_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000968515.1_ASM96851v1	NZ_CP011134	Escherichia coli VR50 chromosome, complete genome	4	3064028-3064360	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	28,28,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|47aa|down_1|NZ_CP011134.1_3065509_3065650_+	NA|424aa|up_9|NZ_CP011134.1_3052669_3053941_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP011134.1_3053931_3054192_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP011134.1_3054208_3054784_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP011134.1_3054931_3055792_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP011134.1_3055788_3056568_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP011134.1_3056545_3057955_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP011134.1_3057976_3059431_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP011134.1_3059500_3060286_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP011134.1_3060604_3061882_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP011134.1_3061908_3063387_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP011134.1_3064699_3065371_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP011134.1_3065509_3065650_+	NA	NA|291aa|down_2|NZ_CP011134.1_3065663_3066536_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP011134.1_3066595_3067894_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP011134.1_3067981_3069619_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP011134.1_3069846_3070638_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP011134.1_3070708_3071044_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP011134.1_3071043_3071292_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP011134.1_3071369_3073604_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP011134.1_3073651_3074953_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_000968515.1_ASM96851v1	NZ_CP011134	Escherichia coli VR50 chromosome, complete genome	5	4847103-4847252	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|551aa|up_6|NZ_CP011134.1_4838335_4839988_+,NA	NA|238aa|up_9|NZ_CP011134.1_4836238_4836952_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP011134.1_4837022_4837616_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP011134.1_4837760_4838213_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|551aa|up_6|NZ_CP011134.1_4838335_4839988_+	NA	NA|335aa|up_5|NZ_CP011134.1_4840060_4841065_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP011134.1_4841226_4841643_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP011134.1_4841688_4842192_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP011134.1_4842384_4843581_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP011134.1_4843636_4846492_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP011134.1_4846491_4846935_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP011134.1_4847288_4848800_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP011134.1_4849066_4850167_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP011134.1_4850166_4851249_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP011134.1_4851409_4852912_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP011134.1_4852989_4853988_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP011134.1_4854054_4855374_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP011134.1_4855436_4856201_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP011134.1_4856224_4857256_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP011134.1_4857472_4858036_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP011134.1_4858039_4859059_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
