bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164180|33|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	801084	801052	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	801052-801084	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164180|33|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	801143	801111	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	801111-801143	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164180|33|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	1415427	1415395	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1415395-1415427	ATTGGGAATACAATTTCTCTTTGTTGGGGTCCA	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	4.1|795518|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	100.00	31	0	0	1	31	287380	287350	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	9e-09	50.7	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	287350-287380	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	0
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	4.1|795518|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	287325	287295	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	8e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	287295-287325	GGTAATGCAAGTTGGCGGGGCCCCAACACAG	1
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	4.1|795518|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	1631356	1631386	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	8e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	1631356-1631386	CTGTGTTGGGGCCCCGCCAACTTCCATTGCC	1
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	7.1|1596900|33|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.97	33	1	0	1	33	801052	801084	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	801052-801084	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	7.1|1596900|33|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.97	33	1	0	1	33	801111	801143	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	801111-801143	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808198	808228	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808198-808228	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808254	808284	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808254-808284	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808310	808340	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808310-808340	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	65643	65673	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	65643-65673	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	363165	363135	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	363135-363165	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	629338	629308	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	629308-629338	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	808365	808395	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808365-808395	CACATTATCGTAAGCTGACTTTCCGTCAGCT	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	852722	852752	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	852722-852752	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1121077	1121047	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1121047-1121077	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1327119	1327089	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1327089-1327119	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1415439	1415469	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1415439-1415469	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1611568	1611538	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1611538-1611568	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1928887	1928917	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1928887-1928917	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	2265402	2265432	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2265402-2265432	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020537	Staphylococcus aureus subsp. aureus ST228, complete genome	10.1|2276203|31|NC_020537|CRISPRCasFinder	NC_020537.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	2440719	2440749	164154-164238|403398-403499|754547-754629|795494-795572|852387-852468|1327098-1327187|1596874-1596958|2155814-2155894|2168135-2168220|2276178-2276258	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2440719-2440749	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
