assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	1	164273-164357	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	164299-164331|164299-164331|164299-164331	NC_020536.1_801212-801180|NC_020536.1_801271-801239|NC_020536.1_1415653-1415621	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_020536.1_153418_154624_+,NA|68aa|down_0|NC_020536.1_164418_164622_-	NA|402aa|up_9|NC_020536.1_153418_154624_+	NA	NA|402aa|up_8|NC_020536.1_154624_155830_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_020536.1_155840_156398_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_020536.1_156397_157285_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_020536.1_157338_158601_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_020536.1_158677_159823_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_020536.1_159887_160214_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_020536.1_160220_160604_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_020536.1_161030_162518_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_020536.1_163164_164124_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_020536.1_164418_164622_-	NA	NA|171aa|down_1|NC_020536.1_164800_165313_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_020536.1_165654_166395_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_020536.1_166408_167380_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_020536.1_167376_168138_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_020536.1_168150_169182_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_020536.1_169398_169758_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_020536.1_169931_170957_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_020536.1_171342_172593_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_020536.1_173039_180215_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	2	403517-403618	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NC_020536.1_393556_393766_-,NA|128aa|up_7|NC_020536.1_394590_394974_-,NA|33aa|up_1|NC_020536.1_401221_401320_+,NA|221aa|down_1|NC_020536.1_404708_405371_-,NA|179aa|down_7|NC_020536.1_411462_411999_-	NA|70aa|up_9|NC_020536.1_393556_393766_-	NA	NA|194aa|up_8|NC_020536.1_393943_394525_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_020536.1_394590_394974_-	NA	NA|209aa|up_6|NC_020536.1_395243_395870_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NC_020536.1_396313_397837_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NC_020536.1_397852_398422_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NC_020536.1_398913_399669_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NC_020536.1_399748_401137_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NC_020536.1_401221_401320_+	NA	NA|440aa|up_0|NC_020536.1_401983_403303_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NC_020536.1_403634_404591_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_020536.1_404708_405371_-	NA	NA|136aa|down_2|NC_020536.1_405513_405921_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_020536.1_406433_407012_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_020536.1_407011_408280_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_020536.1_408317_409784_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_020536.1_409808_411350_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_020536.1_411462_411999_-	NA	NA|235aa|down_8|NC_020536.1_412390_413095_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_020536.1_413493_413766_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	3	754675-754757	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_020536.1_741288_741495_+,NA|34aa|down_1|NC_020536.1_756412_756514_+,NA|52aa|down_8|NC_020536.1_764360_764516_+	NA|69aa|up_9|NC_020536.1_741288_741495_+	NA	NA|237aa|up_8|NC_020536.1_741582_742293_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_020536.1_742276_743281_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_020536.1_743754_745695_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_020536.1_745964_747848_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_020536.1_747859_749641_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_020536.1_749862_750840_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_020536.1_750832_752347_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_020536.1_752586_753645_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_020536.1_753983_754526_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_020536.1_755404_756322_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_020536.1_756412_756514_+	NA	NA|502aa|down_2|NC_020536.1_756591_758097_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_020536.1_758437_758938_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_020536.1_758957_759824_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_020536.1_760624_761023_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_020536.1_760985_763091_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_020536.1_763208_764180_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_020536.1_764360_764516_+	NA	NA|324aa|down_9|NC_020536.1_764554_765526_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	4	795622-795700	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	795646-795676|795646-795676|795646-795676	NC_020536.1_287501-287471|NC_020536.1_287446-287416|NC_020536.1_1631585-1631615	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_020536.1_786498_786603_+,NA|36aa|up_5|NC_020536.1_788035_788143_+,NA	NA|191aa|up_9|NC_020536.1_782939_783512_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_020536.1_783925_786457_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_020536.1_786498_786603_+	NA	NA|370aa|up_6|NC_020536.1_786771_787882_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_020536.1_788035_788143_+	NA	NA|280aa|up_4|NC_020536.1_788290_789130_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_020536.1_789303_789954_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_020536.1_789950_790187_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_020536.1_790455_792441_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_020536.1_792448_795295_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_020536.1_795958_796891_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_020536.1_796896_797736_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_020536.1_797743_798229_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_020536.1_798236_799676_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_020536.1_799742_800678_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_020536.1_801622_802534_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_020536.1_802530_803526_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_020536.1_803636_804581_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_020536.1_805144_805732_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_020536.1_805974_806877_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	5	852613-852694	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_3|NC_020536.1_848778_849156_+,NA	NA|180aa|up_9|NC_020536.1_842848_843388_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NC_020536.1_843538_843859_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NC_020536.1_844002_844359_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NC_020536.1_844516_844897_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_5|NC_020536.1_845797_846883_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_4|NC_020536.1_846879_848772_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_3|NC_020536.1_848778_849156_+	NA	NA|261aa|up_2|NC_020536.1_849306_850089_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_1|NC_020536.1_850214_850946_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_0|NC_020536.1_851333_851996_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|129aa|down_0|NC_020536.1_853304_853691_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_020536.1_853683_853980_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_020536.1_854229_855255_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_020536.1_855247_855943_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_020536.1_855960_856782_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_020536.1_857135_857330_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_020536.1_857563_858415_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_020536.1_858742_859504_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_020536.1_859601_860909_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_020536.1_861014_862265_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	6	1327324-1327413	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGGGG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|78aa|up_9|NC_020536.1_1316428_1316662_+,NA|33aa|up_5|NC_020536.1_1319653_1319752_+,NA|56aa|down_8|NC_020536.1_1340238_1340406_+	NA|78aa|up_9|NC_020536.1_1316428_1316662_+	NA	NA|80aa|up_8|NC_020536.1_1316798_1317038_+	pfam05979, DUF896, Bacterial protein of unknown function (DUF896)	NA|663aa|up_7|NC_020536.1_1317158_1319147_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|81aa|up_6|NC_020536.1_1319424_1319667_+	COG3763, COG3763, Uncharacterized protein conserved in bacteria [Function unknown]	NA|33aa|up_5|NC_020536.1_1319653_1319752_+	NA	NA|156aa|up_4|NC_020536.1_1319845_1320313_+	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]	NA|374aa|up_3|NC_020536.1_1320436_1321558_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1010aa|up_2|NC_020536.1_1321561_1324591_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|121aa|up_1|NC_020536.1_1324661_1325024_-	PRK13954, mscL, large conductance mechanosensitive channel protein MscL	NA|549aa|up_0|NC_020536.1_1325227_1326874_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|902aa|down_0|NC_020536.1_1327764_1330470_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|156aa|down_1|NC_020536.1_1330649_1331117_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|99aa|down_2|NC_020536.1_1331323_1331620_-	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|down_3|NC_020536.1_1331995_1332604_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|664aa|down_4|NC_020536.1_1332809_1334801_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|801aa|down_5|NC_020536.1_1334800_1337203_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|487aa|down_6|NC_020536.1_1337452_1338913_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|284aa|down_7|NC_020536.1_1339412_1340264_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|56aa|down_8|NC_020536.1_1340238_1340406_+	NA	NA|403aa|down_9|NC_020536.1_1340398_1341607_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	7	1597103-1597187	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1597129-1597161|1597129-1597161	NC_020536.1_801180-801212|NC_020536.1_801239-801271	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_020536.1_1586312_1586996_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_020536.1_1587239_1587416_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_020536.1_1587708_1589055_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_020536.1_1589061_1589814_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_020536.1_1589815_1590754_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_020536.1_1590757_1591897_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_020536.1_1592032_1593865_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_020536.1_1593933_1594560_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_020536.1_1594591_1595569_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_020536.1_1595669_1596794_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_020536.1_1597359_1599183_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_020536.1_1599528_1599780_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_020536.1_1599824_1600799_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_020536.1_1600855_1603057_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_020536.1_1603061_1603523_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_020536.1_1603614_1604301_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_020536.1_1604340_1605057_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_020536.1_1605059_1605413_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_020536.1_1605413_1605998_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_020536.1_1605987_1606557_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	8	2156051-2156131	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_2|NC_020536.1_2151913_2152291_-,NA|35aa|down_0|NC_020536.1_2156466_2156571_-,NA|53aa|down_1|NC_020536.1_2157250_2157409_+	NA|313aa|up_9|NC_020536.1_2144628_2145567_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_8|NC_020536.1_2146002_2146668_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_7|NC_020536.1_2146819_2147140_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_6|NC_020536.1_2147141_2148119_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|221aa|up_5|NC_020536.1_2149073_2149736_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|244aa|up_4|NC_020536.1_2150123_2150855_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_3|NC_020536.1_2150980_2151763_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_2|NC_020536.1_2151913_2152291_-	NA	NA|631aa|up_1|NC_020536.1_2152297_2154190_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_0|NC_020536.1_2154186_2155272_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|down_0|NC_020536.1_2156466_2156571_-	NA	NA|53aa|down_1|NC_020536.1_2157250_2157409_+	NA	NA|286aa|down_2|NC_020536.1_2158066_2158924_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_020536.1_2158991_2159774_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_020536.1_2160005_2161811_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_020536.1_2162491_2164030_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_020536.1_2164064_2166197_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_020536.1_2166208_2166643_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_020536.1_2166642_2167749_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_020536.1_2168067_2175513_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	9	2168372-2168457	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_8|NC_020536.1_2156466_2156571_-,NA|53aa|up_7|NC_020536.1_2157250_2157409_+,NA	NA|362aa|up_9|NC_020536.1_2154186_2155272_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|up_8|NC_020536.1_2156466_2156571_-	NA	NA|53aa|up_7|NC_020536.1_2157250_2157409_+	NA	NA|286aa|up_6|NC_020536.1_2158066_2158924_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_020536.1_2158991_2159774_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_020536.1_2160005_2161811_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_020536.1_2162491_2164030_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_020536.1_2164064_2166197_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_020536.1_2166208_2166643_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_020536.1_2166642_2167749_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_020536.1_2175790_2177146_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_020536.1_2177172_2178105_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_020536.1_2178106_2178916_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_020536.1_2179104_2180013_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_020536.1_2186253_2187318_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NC_020536.1_2189231_2189705_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NC_020536.1_2189803_2191147_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NC_020536.1_2191323_2192007_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NC_020536.1_2192025_2193213_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NC_020536.1_2193256_2193772_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_000967385.1_ASM96738v1	NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	10	2276415-2276495	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470|2276440-2276470	NC_020536.1_808424-808454|NC_020536.1_808480-808510|NC_020536.1_808536-808566|NC_020536.1_65765-65795|NC_020536.1_363284-363254|NC_020536.1_629361-629331|NC_020536.1_808591-808621|NC_020536.1_852948-852978|NC_020536.1_1121303-1121273|NC_020536.1_1327345-1327315|NC_020536.1_1415665-1415695|NC_020536.1_1611797-1611767|NC_020536.1_1929121-1929151|NC_020536.1_2265639-2265669|NC_020536.1_2440956-2440986	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_020536.1_2266948_2267113_+,NA|106aa|up_8|NC_020536.1_2267357_2267675_+,NA|84aa|up_5|NC_020536.1_2272796_2273048_+,NA|62aa|up_0|NC_020536.1_2276187_2276373_+,NA	NA|55aa|up_9|NC_020536.1_2266948_2267113_+	NA	NA|106aa|up_8|NC_020536.1_2267357_2267675_+	NA	NA|1056aa|up_7|NC_020536.1_2267858_2271026_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_020536.1_2271142_2272408_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_020536.1_2272796_2273048_+	NA	NA|255aa|up_4|NC_020536.1_2273039_2273804_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_020536.1_2273965_2274406_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_020536.1_2274398_2275610_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_020536.1_2275711_2276062_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_020536.1_2276187_2276373_+	NA	NA|341aa|down_0|NC_020536.1_2276638_2277661_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_020536.1_2277680_2278280_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_020536.1_2278286_2278520_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_020536.1_2278525_2278972_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_020536.1_2278985_2279471_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_020536.1_2279467_2280727_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_020536.1_2280789_2281284_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_020536.1_2281285_2281792_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_020536.1_2281822_2282827_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_020536.1_2282996_2283602_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
