The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	2759473	732794	740615	2759473		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|732794_733850_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|733849_734536_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|734510_734984_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|735326_735767_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|736046_736631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|736729_737443_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|737446_737866_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|737867_738536_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|738886_739480_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|739463_740615_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 2
NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	2759473	752586	767227	2759473		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|752586_753645_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|753983_754526_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|755404_756322_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|756412_756514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|756591_758097_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|758437_758938_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|758957_759824_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|760624_761023_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|760985_763091_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|763208_764180_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|764360_764516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|764554_765526_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|765512_766469_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|766465_767227_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	2759473	1020202	1028675	2759473		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1020202_1020685_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1020671_1021796_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1021799_1022504_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1022503_1022767_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1022768_1023440_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1023432_1025622_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483721.1|1025600_1027085_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	2.5e-45
WP_000030811.1|1027077_1028106_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1028108_1028675_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 4
NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	2759473	1646773	1655816	2759473	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1646773_1647292_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1647313_1649587_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1649789_1652069_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1652343_1652604_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1652622_1653762_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1653784_1654810_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1654811_1655816_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 5
NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	2759473	1777930	1845041	2759473	protease,tRNA	Staphylococcus_phage(95.24%)	60	NA	NA
WP_001266162.1|1777930_1778575_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_000434765.1|1778589_1779381_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000411084.1|1779930_1780779_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_000265424.1|1780782_1782192_-	Mn(2+)-dependent dipeptidase Sapep	NA	NA	NA	NA	NA
WP_001051856.1|1782635_1783058_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_001217125.1|1783074_1783770_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000004335.1|1783766_1785428_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_000285020.1|1785834_1787103_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
WP_001050573.1|1787219_1793780_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	4.0e-305
WP_000836461.1|1794105_1794417_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001557386.1|1794438_1796856_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1797143_1798325_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1798434_1799388_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1799384_1799948_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1800070_1800472_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1801043_1801871_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1801873_1801993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1802104_1803106_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1803227_1803692_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159036.1|1803704_1804886_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.1e-225
WP_000493887.1|1804896_1805529_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1805535_1806579_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1807059_1808562_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1809084_1809399_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1809398_1810691_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1810777_1811632_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1811907_1812132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1812330_1812801_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1812913_1813357_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1813343_1813787_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1814082_1814718_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1815157_1815871_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1816130_1816433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1816688_1817054_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_031870300.1|1817050_1817404_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
WP_000453306.1|1819525_1820359_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1820570_1821479_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1821600_1822797_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1823168_1824761_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1825138_1825885_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1825889_1826363_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1826428_1826686_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_015445868.1|1826682_1827684_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	1.3e-183
WP_000348364.1|1827688_1829167_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1829325_1829781_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1830083_1830734_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1830814_1831810_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1831884_1832511_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1832551_1832893_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1832993_1833566_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1834920_1835016_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1835138_1835240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791797.1|1839255_1839390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1839452_1840172_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1840273_1840381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1840329_1841049_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038873.1|1841169_1841889_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	8.6e-129
WP_001039454.1|1841946_1842669_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039426.1|1842793_1843501_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.6	5.1e-126
WP_001092780.1|1844459_1845041_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
>prophage 6
NC_020536	Staphylococcus aureus subsp. aureus ST228, complete genome	2759473	1943366	2025354	2759473	capsid,head,holin,tail,protease,portal,tRNA,terminase	Staphylococcus_phage(80.56%)	106	NA	NA
WP_000170162.1|1943366_1943669_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1944035_1945574_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|1945662_1946862_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|1946874_1948878_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|1948881_1951074_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|1951070_1951763_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1951934_1952237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1952345_1953641_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|1954500_1955667_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1955697_1956024_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1956315_1956489_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1956469_1957072_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1957342_1958164_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|1958156_1959626_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|1959809_1960886_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1960905_1961700_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1961771_1961879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1961889_1963452_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|1963656_1964754_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|1965122_1965683_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1965735_1966665_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|1966857_1967031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|1967082_1968462_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|1968581_1969610_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1969879_1970281_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1970854_1971028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|1971478_1972519_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1972575_1973418_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1973414_1973972_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1974031_1974556_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1974676_1975240_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1975305_1976046_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|1976045_1976918_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|1976914_1977595_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_015445884.1|1977595_1978492_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|1978488_1978869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1979126_1979303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1979545_1979644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1979843_1981130_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|1981408_1981699_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001557458.1|1981713_1983144_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669791.1|1984101_1984281_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|1984591_1984852_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1984904_1985255_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|1986751_1987243_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|1987433_1988189_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1988200_1988455_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|1988506_1988614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1988666_1988843_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750412.1|1988951_1989725_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|1990097_1990472_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|1990527_1990815_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|1990860_1991013_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_015445885.1|1991005_1994788_-	phage protein	NA	A0A1V0E5H3	Staphylococcus_phage	99.5	0.0e+00
WP_000567390.1|1994803_1996288_-|tail	phage tail family protein	tail	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
WP_015445887.1|1996284_2000814_-|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	91.5	0.0e+00
WP_001549167.1|2000870_2001008_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2001058_2001409_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|2001458_2001683_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|2001724_2002369_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2002369_2002777_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|2002773_2003178_-	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2003174_2003537_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|2003520_2003805_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2003794_2004079_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|2004098_2005244_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000861914.1|2005267_2006005_-|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
WP_000025274.1|2005988_2007176_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_015445889.1|2007191_2008853_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000402904.1|2008849_2009194_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2009323_2009623_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590126.1|2009854_2010271_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000265041.1|2010298_2010499_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000595265.1|2010498_2010648_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195820.1|2010644_2010851_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_000185680.1|2010887_2011424_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_041174218.1|2011416_2011665_-	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	98.8	1.2e-37
WP_001614813.1|2011657_2011966_-	hypothetical protein	NA	C8CH03	Staphylococcus_phage	99.0	2.8e-52
WP_000979209.1|2011962_2012310_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695762.1|2012306_2012708_-	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
WP_012068339.1|2012720_2012969_-	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_000022735.1|2012968_2013223_-	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_111023892.1|2013222_2013273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001187230.1|2013308_2013494_-	DUF3113 family protein	NA	A0A0N9BBI1	Staphylococcus_phage	100.0	1.9e-27
WP_031895320.1|2013498_2013903_-	DUF1064 domain-containing protein	NA	A0A0H4ISQ5	Staphylococcus_phage	99.3	2.6e-66
WP_000451861.1|2013899_2014325_-	phage N-6-adenine-methyltransferase	NA	C8CGZ6	Staphylococcus_phage	100.0	4.7e-82
WP_001123688.1|2014334_2014556_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_001024405.1|2014559_2014775_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
WP_015445891.1|2014771_2016013_-	AAA family ATPase	NA	M9NSS7	Staphylococcus_phage	99.8	5.7e-229
WP_001132243.1|2016009_2016366_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_001037657.1|2016365_2017121_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_015445893.1|2017113_2017788_-	hypothetical protein	NA	Q4ZCW9	Staphylococcus_virus	97.8	2.0e-127
WP_001004506.1|2017788_2018340_-	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
WP_000934384.1|2018350_2018776_-	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
WP_000139720.1|2018775_2019399_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815403.1|2019391_2019613_-	DUF2483 family protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000291076.1|2019622_2019883_-	DUF1108 family protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
WP_000066021.1|2019974_2020136_-	DUF1270 family protein	NA	Q4ZBM9	Staphylococcus_phage	100.0	3.8e-21
WP_001124198.1|2020147_2020411_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001038398.1|2020440_2020659_-	hypothetical protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
WP_001025595.1|2020655_2020982_-	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_001814660.1|2021037_2021670_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	92.4	7.6e-105
WP_000939500.1|2021684_2021825_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.4e-16
WP_000240642.1|2022459_2024076_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2024151_2024436_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2024610_2025354_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
NC_020567	Staphylococcus aureus subsp. aureus ST228 plasmid pI6T6, complete sequence	32700	0	22507	32700	transposase	Streptococcus_phage(27.27%)	20	NA	NA
WP_000003264.1|891_3075_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	64.0	8.1e-255
WP_000726007.1|3067_3436_-	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	85.2	4.2e-55
WP_000733283.1|3998_4844_-	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
WP_001096374.1|4950_6708_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284656.1|6697_7078_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690625.1|7341_7920_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	4.2e-41
WP_000583528.1|8045_8654_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_001049146.1|8899_9238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000797248.1|9242_9428_+	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_015445979.1|9560_10127_-	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA	NA
WP_000622776.1|10304_11849_+	quaternary ammonium compound efflux MFS transporter QacA	NA	A0A0M3UL24	Mycobacterium_phage	26.8	4.2e-32
WP_001077893.1|12053_12614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001807343.1|12689_12812_+	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_000848988.1|12929_13700_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001132442.1|14143_15088_+	replication initiator protein A	NA	Q9MCM7	Streptococcus_virus	47.1	1.5e-19
WP_000284571.1|15620_17225_+|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_001030803.1|17981_18170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000119692.1|19188_19536_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	35.8	1.9e-12
WP_078065292.1|20884_21796_-	protein rep	NA	NA	NA	NA	NA
WP_012816671.1|21832_22507_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	86.6	7.6e-111
>prophage 2
NC_020567	Staphylococcus aureus subsp. aureus ST228 plasmid pI6T6, complete sequence	32700	25587	29466	32700	transposase	Staphylococcus_phage(50.0%)	4	NA	NA
WP_001105988.1|25587_26262_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000377078.1|26380_26896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000790333.1|27090_27741_-	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000193219.1|27822_29466_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
